mRNA_H-elongata_contig189231.5195.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 240 bits (612), Expect = 1.900e-72 Identity = 118/275 (42.91%), Postives = 183/275 (66.55%), Query Frame = 2
Query: 83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+V +++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA A H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + +EALF+RA L F+ P+ +G + + DN
Sbjct: 192 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVEEALFLRAELSFVAPETSGSSIQVLEDN 462
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 232 bits (592), Expect = 9.760e-71 Identity = 129/276 (46.74%), Postives = 168/276 (60.87%), Query Frame = 2
Query: 86 IGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
+G QC A+ CVFRL+ E V +++ VHVDDI G+K+ CDKF L E PVKN GEL Y+ C + RD E G+L ++Q FAE L A+Y + ++P SV L E E D F R LV SLMWL+ TRPDIANA+RA A + +P +WKA L I YV T +G+ F +G +G+ + V+ DADYA+ + DRRSVSG VM G + W S TQKCVT +T EAEYVA+ D KE LF+R F+ PD + + +F DN
Sbjct: 34 LGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEASADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDN 306
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 241 bits (615), Expect = 1.850e-70 Identity = 118/272 (43.38%), Postives = 183/272 (67.28%), Query Frame = 2
Query: 92 LEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
+EQCKA+PCVFR +V++ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+VA+++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA A H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + KEALF+RA L+F+ P+ G + + DN
Sbjct: 419 VEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDN 686
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 233 bits (595), Expect = 2.340e-70 Identity = 116/266 (43.61%), Postives = 178/266 (66.92%), Query Frame = 2
Query: 83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTG 880
E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+V +++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA A H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + KE+LF+RA L F+ P+ G
Sbjct: 128 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKESLFVRAVLSFVAPETRG 389
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 230 bits (586), Expect = 4.180e-69 Identity = 129/276 (46.74%), Postives = 167/276 (60.51%), Query Frame = 2
Query: 86 IGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
+G QC A+ CVFRL+ E V +++ VHVDDI G+K+ CDKF L E PVKN GEL Y+ C + RD E G+L ++Q FAE L A+Y + ++P SV L E E D F R LV SLMWL+ TRPDIANA+RA A + +P +WKA L I YV T +G+ F +G +G+ + V+ DADYA+ + DRRSVSG VM G + W S TQKCVT +T EAEYVA+ D KE LF+R F+ PD + +F DN
Sbjct: 96 LGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDN 368
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 241 bits (615), Expect = 1.210e-68 Identity = 119/275 (43.27%), Postives = 183/275 (66.55%), Query Frame = 2
Query: 83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+V +++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA A H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + KEALF+RA L F+ P+ +G + + DN
Sbjct: 905 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1175
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 241 bits (615), Expect = 1.600e-68 Identity = 119/275 (43.27%), Postives = 183/275 (66.55%), Query Frame = 2
Query: 83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+V +++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA A H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + KEALF+RA L F+ P+ +G + + DN
Sbjct: 1284 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1554
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 241 bits (615), Expect = 1.630e-68 Identity = 119/275 (43.27%), Postives = 183/275 (66.55%), Query Frame = 2
Query: 83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+V +++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA A H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + KEALF+RA L F+ P+ +G + + DN
Sbjct: 1447 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1717
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.840e-68 Identity = 118/275 (42.91%), Postives = 182/275 (66.18%), Query Frame = 2
Query: 83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+V +++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + KEALF+RA L F+ P+ +G + + DN
Sbjct: 842 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPEASGSSIQVLEDN 1112
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 240 bits (613), Expect = 2.990e-68 Identity = 119/275 (43.27%), Postives = 182/275 (66.18%), Query Frame = 2
Query: 83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
E G EQCKA+PCVFR +V+ V +++ ++VDDI+V+G + C++ L + FP KN GE + GCA RD E+G L ++QTA+ +S+V +++V +TS IP +P DLGP++E E GG+ R + S+MW+S +RPD++ A+RA A H+ P+ R+W A+ +I Y+ T+ +G+ + +GSGL L+VY DA YA + DRRSVSG+A +G T + S TQ V+ ++ EAEY+A + KEALF+RA L F+ P+ +G + + DN
Sbjct: 1304 ENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1574 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig189231.5195.1 >prot_H-elongata_contig189231.5195.1 ID=prot_H-elongata_contig189231.5195.1|Name=mRNA_H-elongata_contig189231.5195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp MLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLback to top mRNA from alignment at H-elongata_contig189231:287..1193+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig189231.5195.1 ID=mRNA_H-elongata_contig189231.5195.1|Name=mRNA_H-elongata_contig189231.5195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig189231:287..1193+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig189231:287..1193+ >mRNA_H-elongata_contig189231.5195.1 ID=mRNA_H-elongata_contig189231.5195.1|Name=mRNA_H-elongata_contig189231.5195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig189231:287..1193+ (Himanthalia elongata Himel1 dioecious)back to top |