mRNA_H-elongata_contig188768.5179.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188768.5179.1
Unique NamemRNA_H-elongata_contig188768.5179.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: D7FTR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.800e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL 135
            C+R   P M+ G+KGI HDL YLSNDDI+TPTA+VGKKMVPILEL
Sbjct:   29 CVR---PRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILEL 70
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A6H5J619_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J619_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.520e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL 135
            C+R   P M+ G+KGI HDL YLSNDDI+TPTA+VGKKMVPILEL
Sbjct:  100 CVR---PRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILEL 141
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A0G4EFM6_VITBC (GST N-terminal domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFM6_VITBC)

HSP 1 Score: 63.9 bits (154), Expect = 9.270e-11
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL 135
            C+RAR   MI G+K I HDL+Y++NDDI+TPT L+GKKM PILE+
Sbjct:  119 CVRAR---MIFGLKNIKHDLVYMANDDIETPTHLIGKKMAPILEV 160
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: W7TQ45_9STRA (Glutaredoxin 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ45_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.570e-10
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL 135
            C+RAR   +I G+K I H L++L NDD DTPTALVGKKMVPILE+
Sbjct:   64 CVRAR---IIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEM 105
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A5J4YKV5_PORPP (Glutaredoxin 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKV5_PORPP)

HSP 1 Score: 59.3 bits (142), Expect = 2.840e-9
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL 135
            C+R +T    LG+K I H+L++L+NDD+ TPTALVGKK+VPILE+
Sbjct:   33 CVRVQTA---LGLKNIKHELVFLANDDVATPTALVGKKVVPILEI 74
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A813EIR4_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EIR4_POLGL)

HSP 1 Score: 59.7 bits (143), Expect = 2.980e-9
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL 135
            C+RAR   +I G+K I H+L++++NDD+DTPTALVGKK+ PIL+L
Sbjct:   97 CVRAR---IIFGMKNIKHNLVWMANDDVDTPTALVGKKISPILQL 138
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A7S2GAX3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GAX3_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.060e-8
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPI 126
            C+R R   M LG+ GI H LM++ NDD++TPTALVGKK+ PI
Sbjct:   15 CVRVR---MALGVLGIQHKLMFMGNDDVETPTALVGKKIAPI 53
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A4R1K9M1_9GAMM (Glutaredoxin 2 n=1 Tax=Celerinatantimonas diazotrophica TaxID=412034 RepID=A0A4R1K9M1_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 1.110e-8
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILE 132
            C++AR   MI G+KGI   L  L NDD+DTPTA++GKKMVPILE
Sbjct:   12 CVKAR---MIFGLKGIPVTLNILLNDDVDTPTAMIGKKMVPILE 52
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A7S0M661_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M661_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 1.270e-8
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL 135
            C+R R    I+G K I H++++L+NDDI+TPT LVGKK+VPILE+
Sbjct:   52 CVRVR---FIMGFKNIKHNVVFLANDDIETPTKLVGKKVVPILEI 93
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BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Match: A0A0G4H2N0_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H2N0_9ALVE)

HSP 1 Score: 56.2 bits (134), Expect = 4.710e-8
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 CLRARTPSMILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPIL 129
            C+RAR   +I G+K I H+L++L+ND++D PT LVGKKMVPIL
Sbjct:   68 CVRAR---IIFGLKKIKHELIWLANDEVDIPTRLVGKKMVPIL 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188768.5179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTR2_ECTSI1.800e-1373.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J619_9PHAE3.520e-1373.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4EFM6_VITBC9.270e-1164.44GST N-terminal domain-containing protein n=1 Tax=V... [more]
W7TQ45_9STRA2.570e-1066.67Glutaredoxin 2 n=2 Tax=Monodopsidaceae TaxID=42507... [more]
A0A5J4YKV5_PORPP2.840e-960.00Glutaredoxin 2 n=1 Tax=Porphyridium purpureum TaxI... [more]
A0A813EIR4_POLGL2.980e-960.00Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A7S2GAX3_9EUKA1.060e-859.52Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A4R1K9M1_9GAMM1.110e-863.64Glutaredoxin 2 n=1 Tax=Celerinatantimonas diazotro... [more]
A0A7S0M661_9CRYP1.270e-857.78Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A0G4H2N0_9ALVE4.710e-860.47Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188768contigH-elongata_contig188768:1012..1146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog2880.D7FTR2
EggNOG free text desc.Glutaredoxin 2, C terminal domain
EggNOG OGs2RYF1@2759,COG2999@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.8582788-CDS-H-elongata_contig188768:1011..11221622930079.8582788-CDS-H-elongata_contig188768:1011..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188768 1012..1122 -
1691679272.8831136-CDS-H-elongata_contig188768:1011..11221691679272.8831136-CDS-H-elongata_contig188768:1011..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188768 1012..1122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.87108-UTR-H-elongata_contig188768:1122..11461622930079.87108-UTR-H-elongata_contig188768:1122..1146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188768 1123..1146 -
1691679272.8969872-UTR-H-elongata_contig188768:1122..11461691679272.8969872-UTR-H-elongata_contig188768:1122..1146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188768 1123..1146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188768.5179.1prot_H-elongata_contig188768.5179.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188768 1012..1122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188768.5179.1

>prot_H-elongata_contig188768.5179.1 ID=prot_H-elongata_contig188768.5179.1|Name=mRNA_H-elongata_contig188768.5179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MILGIKGIDHDLMYLSNDDIDTPTALVGKKMVPILEL
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mRNA from alignment at H-elongata_contig188768:1012..1146-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188768.5179.1 ID=mRNA_H-elongata_contig188768.5179.1|Name=mRNA_H-elongata_contig188768.5179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig188768:1012..1146- (Himanthalia elongata Himel1 dioecious)
TGTCTTCGCGCGCGCACGCCCAGTATGATCCTCGGCATCAAGGGCATCGA
CCACGACCTGATGTACCTGTCTAACGACGACATCGACACCCCCACCGCGC
TGGTTGGCAAGAAGATGGTACCGATTCTCGAGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig188768:1012..1146-

>mRNA_H-elongata_contig188768.5179.1 ID=mRNA_H-elongata_contig188768.5179.1|Name=mRNA_H-elongata_contig188768.5179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig188768:1012..1146- (Himanthalia elongata Himel1 dioecious)
ATGATCCTCGGCATCAAGGGCATCGACCACGACCTGATGTACCTGTCTAA
CGACGACATCGACACCCCCACCGCGCTGGTTGGCAAGAAGATGGTACCGA
TTCTCGAGCTGATGATCCTCGGCATCAAGGGCATCGACCACGACCTGATG
TACCTGTCTAACGACGACATCGACACCCCCACCGCGCTGGTTGGCAAGAA
GATGGTACCGATTCTCGAGCTG
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