mRNA_H-elongata_contig188670.5175.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188670.5175.1
Unique NamemRNA_H-elongata_contig188670.5175.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188670.5175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188670contigH-elongata_contig188670:45..227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size168
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.47815-UTR-H-elongata_contig188670:44..591622930079.47815-UTR-H-elongata_contig188670:44..59Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188670 45..59 +
1691679272.7956114-UTR-H-elongata_contig188670:44..591691679272.7956114-UTR-H-elongata_contig188670:44..59Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188670 45..59 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.4914324-CDS-H-elongata_contig188670:59..2271622930079.4914324-CDS-H-elongata_contig188670:59..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188670 60..227 +
1691679272.8073058-CDS-H-elongata_contig188670:59..2271691679272.8073058-CDS-H-elongata_contig188670:59..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188670 60..227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188670.5175.1prot_H-elongata_contig188670.5175.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188670 60..227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188670.5175.1

>prot_H-elongata_contig188670.5175.1 ID=prot_H-elongata_contig188670.5175.1|Name=mRNA_H-elongata_contig188670.5175.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MINVVNLQKAMIRLGHSSISTADCEAMIREVDRQGEGYISKEDFSHLQEC
SFENL*
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mRNA from alignment at H-elongata_contig188670:45..227+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188670.5175.1 ID=mRNA_H-elongata_contig188670.5175.1|Name=mRNA_H-elongata_contig188670.5175.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig188670:45..227+ (Himanthalia elongata Himel1 dioecious)
TCCAGAGGACAAAACATGATTAATGTCGTCAACCTTCAAAAGGCGATGAT
CCGCTTGGGGCACTCATCGATCAGCACGGCCGACTGCGAGGCGATGATCC
GGGAGGTGGATCGTCAGGGCGAGGGATACATTTCTAAGGAAGACTTCAGT
CACCTCCAGGAGTGCTCCTTCGAAAACCTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig188670:45..227+

>mRNA_H-elongata_contig188670.5175.1 ID=mRNA_H-elongata_contig188670.5175.1|Name=mRNA_H-elongata_contig188670.5175.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig188670:45..227+ (Himanthalia elongata Himel1 dioecious)
ATGATTAATGTCGTCAACCTTCAAAAGGCGATGATCCGCTTGGGGCACTC
ATCGATCAGCACGGCCGACTGCGAGGCGATGATCCGGGAGGTGGATCGTC
AGGGCGAGGGATACATTTCTAAGGAAGACTTCAGTCACCTCCAGGAGTGC
TCCTTCGAAAACCTTTAAATGATTAATGTCGTCAACCTTCAAAAGGCGAT
GATCCGCTTGGGGCACTCATCGATCAGCACGGCCGACTGCGAGGCGATGA
TCCGGGAGGTGGATCGTCAGGGCGAGGGATACATTTCTAAGGAAGACTTC
AGTCACCTCCAGGAGTGCTCCTTCGAAAACCTTTAA
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