mRNA_H-elongata_contig18863.5172.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18863.5172.1
Unique NamemRNA_H-elongata_contig18863.5172.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18863.5172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18863contigH-elongata_contig18863:5227..5983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.0720031-CDS-H-elongata_contig18863:5228..53481622930079.0720031-CDS-H-elongata_contig18863:5228..5348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 5229..5348 -
1691679272.6827161-CDS-H-elongata_contig18863:5228..53481691679272.6827161-CDS-H-elongata_contig18863:5228..5348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 5229..5348 -
1622930079.0860958-CDS-H-elongata_contig18863:5854..59831622930079.0860958-CDS-H-elongata_contig18863:5854..5983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 5855..5983 -
1691679272.692452-CDS-H-elongata_contig18863:5854..59831691679272.692452-CDS-H-elongata_contig18863:5854..5983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 5855..5983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18863.5172.1prot_H-elongata_contig18863.5172.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18863 5229..5983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18863.5172.1

>prot_H-elongata_contig18863.5172.1 ID=prot_H-elongata_contig18863.5172.1|Name=mRNA_H-elongata_contig18863.5172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
KRSGGKGKRKRAAGASALFDDEAEESDDGGGRGGGGDEEEEEDDENNVYQ
LDGFVVGDDEASEEELERRSTKSGSGGRKRRRL
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mRNA from alignment at H-elongata_contig18863:5227..5983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18863.5172.1 ID=mRNA_H-elongata_contig18863.5172.1|Name=mRNA_H-elongata_contig18863.5172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=757bp|location=Sequence derived from alignment at H-elongata_contig18863:5227..5983- (Himanthalia elongata Himel1 dioecious)
AAGAGGTCGGGGGGAAAGGGGAAGAGAAAACGGGCCGCGGGTGCGTCGGC
TCTCTTCGACGACGAGGCGGAAGAAAGCGACGATGGAGGCGGCAGAGGCG
GTGGGGGAGACGAAGAAGAGGAAGAGGATGTGAGAAATACTATATTCAGA
GCTACTTGGGTATATACCGGTATTAGACGGGTCGTAGTGCTTGGCCTTGA
AATGTTATATCTTGTATGTGGAGGGCACTCATATCGGAGGCGTGTCTATC
GTGAGGTTGCCTTGTTGCTGTTGCTGTTGCTGCCGTGCCGACTGTGGAGT
TTGAGGCAAAGTTCGGAGGATGCCCGACAGGAAATTCTCCAAGGTTGTCC
CCCATCCCTTTTCAGCGTGACATTTCAAATTTCTTGGTATATACCATACT
GGTATACTGTTGCATTACTCAATCGAGTGCTGCCGCCGATTGCACCGAGG
GACGAGCTTTGGCCGAACACACGTAGTTTTTGTTATCGCTCCCTGTCATC
CCTCTTCTTTTCATTCGCTGATTTAGCTTCAACTTGTTTTTCAAAATTAT
GGACTCATTGCAATCCTTGGAACATTCACACCTTCTTTCTTTACACTGGC
TTTGTTTTTGGTTTTTGTTTCGTTTCGTTTCGCAGGACGAAAACAATGTC
TACCAGCTCGACGGTTTCGTGGTGGGGGACGACGAGGCCTCCGAGGAGGA
ACTAGAGCGCCGCAGCACCAAAAGTGGCAGCGGGGGGCGTAAACGGAGAC
GCCTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig18863:5227..5983-

>mRNA_H-elongata_contig18863.5172.1 ID=mRNA_H-elongata_contig18863.5172.1|Name=mRNA_H-elongata_contig18863.5172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig18863:5227..5983- (Himanthalia elongata Himel1 dioecious)
AAGAGGTCGGGGGGAAAGGGGAAGAGAAAACGGGCCGCGGGTGCGTCGGC
TCTCTTCGACGACGAGGCGGAAGAAAGCGACGATGGAGGCGGCAGAGGCG
GTGGGGGAGACGAAGAAGAGGAAGAGGATAAGAGGTCGGGGGGAAAGGGG
AAGAGAAAACGGGCCGCGGGTGCGTCGGCTCTCTTCGACGACGAGGCGGA
AGAAAGCGACGATGGAGGCGGCAGAGGCGGTGGGGGAGACGAAGAAGAGG
AAGAGGATGACGAAAACAATGTCTACCAGCTCGACGGTTTCGTGGTGGGG
GACGACGAGGCCTCCGAGGAGGAACTAGAGCGCCGCAGCACCAAAAGTGG
CAGCGGGGGGCGTAAACGGAGACGCCTCGACGAAAACAATGTCTACCAGC
TCGACGGTTTCGTGGTGGGGGACGACGAGGCCTCCGAGGAGGAACTAGAG
CGCCGCAGCACCAAAAGTGGCAGCGGGGGGCGTAAACGGAGACGCCTC
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