mRNA_H-elongata_contig18863.5170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18863.5170.1
Unique NamemRNA_H-elongata_contig18863.5170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18863.5170.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 7.700e-29
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 ELEDEAQWICHQLDLGYSAQEEKAKKAVEHVLRFLGVERQEVPFIWYFRRDYLRTGP--SSHLTRNHLWKIFQFDETWAKV 237
            E +DEAQWI HQLDLG+   E+ AK A+EHVLRFLGVE QEVPF+W++RRDYL T P  +++LT +HLWKI+  DETW KV
Sbjct:  359 ERQDEAQWIFHQLDLGFGVDEQMAKSAIEHVLRFLGVESQEVPFVWHYRRDYLWTSPQMNTYLTLDHLWKIYDLDETWDKV 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18863.5170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQN4_ECTSI7.700e-2965.43GTB1 RNA binding / hydrolase, acting on ester bond... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18863contigH-elongata_contig18863:277..1040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D8LQN4
KEGG koko:K11292
EggNOG free text desc.obsolete transcription factor activity, core RNA polymerase II binding
EggNOG OGsCOG2183@1,KOG1856@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.1223137-CDS-H-elongata_contig18863:276..3701622930079.1223137-CDS-H-elongata_contig18863:276..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 277..370 -
1691679272.7082222-CDS-H-elongata_contig18863:276..3701691679272.7082222-CDS-H-elongata_contig18863:276..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 277..370 -
1622930079.1324654-CDS-H-elongata_contig18863:891..10401622930079.1324654-CDS-H-elongata_contig18863:891..1040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 892..1040 -
1691679272.7199304-CDS-H-elongata_contig18863:891..10401691679272.7199304-CDS-H-elongata_contig18863:891..1040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18863 892..1040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18863.5170.1prot_H-elongata_contig18863.5170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18863 277..1040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18863.5170.1

>prot_H-elongata_contig18863.5170.1 ID=prot_H-elongata_contig18863.5170.1|Name=mRNA_H-elongata_contig18863.5170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
ELEDEAQWICHQLDLGYSAQEEKAKKAVEHVLRFLGVERQEVPFIWYFRR
DYLRTGPSSHLTRNHLWKIFQFDETWAKVRQ
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mRNA from alignment at H-elongata_contig18863:277..1040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18863.5170.1 ID=mRNA_H-elongata_contig18863.5170.1|Name=mRNA_H-elongata_contig18863.5170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=764bp|location=Sequence derived from alignment at H-elongata_contig18863:277..1040- (Himanthalia elongata Himel1 dioecious)
GAGCTGGAGGACGAGGCGCAGTGGATCTGCCACCAGCTGGACCTCGGGTA
CAGCGCTCAAGAGGAGAAGGCAAAAAAGGCCGTTGAACACGTCCTGCGGT
TCCTCGGCGTCGAACGGCAAGAAGTGCCTTTCATCTGGTACTTCAGGCGG
TGAGCCGATCGAGCGTGACCGCAAAGTGTATTCCACGTTTCGACTGTATC
TCTTTTTATTCTTTTCTTTTTTGTAAGACTATAATATATATATACGACGA
TGATGTTTCAAGTGTTTGGGTGGGTGGCGAGCGCCGCATTTCCCAGATAC
TATTTAGGAGAAGGAGTATAGCGCCATTCAGCATCCTTCTGGCGGAACCT
CGACGGTATCTTGCGTTTGTCGCATCGCTTGATTGGGCGCTTAGCCCCAA
CTCATGAACGCAGATAGGCCTCTCTCTGTCGTAGTCTCTCTGTCTCTCTC
ATGATCAGACTTGGACAAAGTAATTAAGGCATCTATAAGGCATCTAAGGT
AGTCAGTTGAGTAATGAAGGGAATCGAATCGAATCGAATCGATCGACCAA
TCGATCGACAGCTTGGCCACGTCTGTTGACTTCAAAGTTCATTGTGAAAG
TTATTGTTTCTGTTGTGGGGGATGGTTGCGTCACTACTGCCGGACGTGCA
TGTCACTACTGCCAATGCAGGGATTACCTTCGGACGGGGCCGTCCAGTCA
TCTTACCAGAAACCATCTCTGGAAGATATTCCAGTTTGATGAGACTTGGG
CCAAGGTAAGGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig18863:277..1040-

>mRNA_H-elongata_contig18863.5170.1 ID=mRNA_H-elongata_contig18863.5170.1|Name=mRNA_H-elongata_contig18863.5170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig18863:277..1040- (Himanthalia elongata Himel1 dioecious)
GAGCTGGAGGACGAGGCGCAGTGGATCTGCCACCAGCTGGACCTCGGGTA
CAGCGCTCAAGAGGAGAAGGCAAAAAAGGCCGTTGAACACGTCCTGCGGT
TCCTCGGCGTCGAACGGCAAGAAGTGCCTTTCATCTGGTACTTCAGGCGG
AGCTGGAGGACGAGGCGCAGTGGATCTGCCACCAGCTGGACCTCGGGTAC
AGCGCTCAAGAGGAGAAGGCAAAAAAGGCCGTTGAACACGTCCTGCGGTT
CCTCGGCGTCGAACGGCAAGAAGTGCCTTTCATCTGGTACTTCAGGCGGG
ATTACCTTCGGACGGGGCCGTCCAGTCATCTTACCAGAAACCATCTCTGG
AAGATATTCCAGTTTGATGAGACTTGGGCCAAGGTAAGGCAAGGATTACC
TTCGGACGGGGCCGTCCAGTCATCTTACCAGAAACCATCTCTGGAAGATA
TTCCAGTTTGATGAGACTTGGGCCAAGGTAAGGCAA
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