mRNA_H-elongata_contig188627.5169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188627.5169.1
Unique NamemRNA_H-elongata_contig188627.5169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A0A6H5L4N4_9PHAE (RNA cytidine acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.380e-27
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPPVEGEGVPT 183
            SRFRTESSGDVVGRFNERFMLTLGDCKS L+CDDELNVLPLSSHARDIVPLPPV+ +   T
Sbjct:   99 SRFRTESSGDVVGRFNERFMLTLGDCKSCLVCDDELNVLPLSSHARDIVPLPPVDEDAETT 159
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A9SM91_PHYPA (RNA cytidine acetyltransferase n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A9SM91_PHYPA)

HSP 1 Score: 87.0 bits (214), Expect = 2.020e-18
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPPVEGE 171
            +RFRTES GDVVGRFNERF+L+L  CKS L+ DDELN LPLSSH + I PLP +EGE
Sbjct:  168 ARFRTESHGDVVGRFNERFILSLAACKSCLVMDDELNPLPLSSHTKSITPLPNLEGE 224
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: UPI00193A6AE9 (LOW QUALITY PROTEIN: RNA cytidine acetyltransferase-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6AE9)

HSP 1 Score: 82.0 bits (201), Expect = 1.160e-16
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPPVEGEGVPT 183
            SRFRTES  DVVGRFNERF+L++  CK SL+ DD+LN+LP+S+HA +I+ +PP   +  PT
Sbjct:  169 SRFRTESHQDVVGRFNERFLLSISSCKHSLVMDDQLNILPISTHALNIIAIPPKSSDDPPT 229
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: UPI0011270E5D (RNA cytidine acetyltransferase isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI0011270E5D)

HSP 1 Score: 80.9 bits (198), Expect = 2.960e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPPVEGE 171
            +R+RTE+  DVVGRFNERF+L+L  CK+SL+ DD+LN+LP+SSH  DI PLPP   E
Sbjct:  169 ARYRTEAHQDVVGRFNERFILSLASCKNSLVIDDQLNILPISSHTADIKPLPPESRE 225
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A0A392RRQ5_9FABA (UPF0202 protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RRQ5_9FABA)

HSP 1 Score: 74.3 bits (181), Expect = 3.280e-16
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 RFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLP 156
            RFRTES  +  GRFNERF+L+L  CK+ ++ DDELNVLP+SSH R I P+P
Sbjct:    5 RFRTESHSEATGRFNERFLLSLASCKACVVMDDELNVLPISSHIRSITPVP 55
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A0A6F9DMJ4_9ASCI (RNA cytidine acetyltransferase n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DMJ4_9ASCI)

HSP 1 Score: 80.1 bits (196), Expect = 5.530e-16
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPP 159
            SR+RTES  DV+GRFNERF+L++  CK+ L+ DD LNVLP+SSHA+ IVP+PP
Sbjct:  169 SRYRTESHNDVIGRFNERFLLSVASCKNCLVIDDNLNVLPVSSHAQAIVPVPP 221
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A0A3Q0SJ10_AMPCI (RNA cytidine acetyltransferase n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0SJ10_AMPCI)

HSP 1 Score: 79.7 bits (195), Expect = 7.560e-16
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPPVEGEGVP 180
            SR+RTE+  DVVGRFNERF+L+L  CK+ ++ DD+LN+LPLSSH  +I P+PP   +G+P
Sbjct:  171 SRYRTEAHQDVVGRFNERFILSLASCKNCVVIDDQLNILPLSSHMANIKPVPPKTQDGLP 230
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A0A1V9YCU8_9STRA (RNA cytidine acetyltransferase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YCU8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.560e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPPVEGEGVP 180
            +RFRTE+  DVV RFNERF+L+L +C   L+ DDELNVLP+S HAR+I  LPPVE E  P
Sbjct:  169 ARFRTEAHQDVVARFNERFILSLSNCDKCLVLDDELNVLPISKHARNIEALPPVEDELTP 228
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BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A0A0S7GGW4_9TELE (NAT10 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GGW4_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 8.430e-16
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPP 159
            SR+RTE+  DVVGRFNERF+L+L  CK+ ++ DD+LN+LP+SSH  +I P+PP
Sbjct:   52 SRYRTEAHQDVVGRFNERFILSLSSCKNCVVIDDQLNILPISSHMANIRPVPP 104
[Close]
BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Match: A0A7L1ZH33_LEILU (NAT10 acetyltransferase (Fragment) n=1 Tax=Leiothrix lutea TaxID=36275 RepID=A0A7L1ZH33_LEILU)

HSP 1 Score: 79.3 bits (194), Expect = 1.030e-15
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVPLPPVEGE 171
            SR+RTE+  DVVGRFNERF+L+L  CK+ L+ DD+LN+LP+SSHA +I P+PP   E
Sbjct:  169 SRYRTEAHQDVVGRFNERFILSLASCKTCLVIDDQLNILPISSHAANITPVPPQSQE 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188627.5169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N4_9PHAE8.380e-2786.89RNA cytidine acetyltransferase n=2 Tax=Ectocarpus ... [more]
A9SM91_PHYPA2.020e-1871.93RNA cytidine acetyltransferase n=4 Tax=Physcomitri... [more]
UPI00193A6AE91.160e-1659.02LOW QUALITY PROTEIN: RNA cytidine acetyltransferas... [more]
UPI0011270E5D2.960e-1663.16RNA cytidine acetyltransferase isoform X1 n=2 Tax=... [more]
A0A392RRQ5_9FABA3.280e-1662.75UPF0202 protein (Fragment) n=1 Tax=Trifolium mediu... [more]
A0A6F9DMJ4_9ASCI5.530e-1666.04RNA cytidine acetyltransferase n=1 Tax=Phallusia m... [more]
A0A3Q0SJ10_AMPCI7.560e-1658.33RNA cytidine acetyltransferase n=1 Tax=Amphilophus... [more]
A0A1V9YCU8_9STRA7.560e-1663.33RNA cytidine acetyltransferase n=4 Tax=Saprolegnia... [more]
A0A0S7GGW4_9TELE8.430e-1660.38NAT10 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A7L1ZH33_LEILU1.030e-1561.40NAT10 acetyltransferase (Fragment) n=1 Tax=Leiothr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188627contigH-elongata_contig188627:86..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1e-22
Seed eggNOG ortholog2880.D7FZ70
Preferred nameNAT10
KEGG koko:K14521
KEGG Pathwayko03008,map03008
GOsGO:0000049,GO:0000154,GO:0000166,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030490,GO:0030496,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051391,GO:0051392,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1904356,GO:1904357,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.tRNA N-acetyltransferase activity
EggNOG OGsCOG1444@1,KOG2036@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.0300775-CDS-H-elongata_contig188627:85..2861622930079.0300775-CDS-H-elongata_contig188627:85..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188627 86..286 -
1691679272.6696696-CDS-H-elongata_contig188627:85..2861691679272.6696696-CDS-H-elongata_contig188627:85..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188627 86..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188627.5169.1prot_H-elongata_contig188627.5169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188627 86..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188627.5169.1

>prot_H-elongata_contig188627.5169.1 ID=prot_H-elongata_contig188627.5169.1|Name=mRNA_H-elongata_contig188627.5169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
SRFRTESSGDVVGRFNERFMLTLGDCKSSLICDDELNVLPLSSHARDIVP
LPPVEGEGVPTSVLRV*
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mRNA from alignment at H-elongata_contig188627:86..286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188627.5169.1 ID=mRNA_H-elongata_contig188627.5169.1|Name=mRNA_H-elongata_contig188627.5169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig188627:86..286- (Himanthalia elongata Himel1 dioecious)
TCCAGGTTCCGCACGGAGAGCTCCGGCGACGTGGTGGGCCGCTTCAACGA
GCGCTTCATGCTCACTCTAGGGGACTGTAAGAGCAGCTTGATCTGTGACG
ATGAGCTCAACGTCCTCCCGCTGTCGTCCCACGCCAGAGACATTGTTCCC
CTGCCACCCGTCGAGGGTGAGGGAGTTCCAACTTCGGTGCTCCGAGTGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig188627:86..286-

>mRNA_H-elongata_contig188627.5169.1 ID=mRNA_H-elongata_contig188627.5169.1|Name=mRNA_H-elongata_contig188627.5169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig188627:86..286- (Himanthalia elongata Himel1 dioecious)
TCCAGGTTCCGCACGGAGAGCTCCGGCGACGTGGTGGGCCGCTTCAACGA
GCGCTTCATGCTCACTCTAGGGGACTGTAAGAGCAGCTTGATCTGTGACG
ATGAGCTCAACGTCCTCCCGCTGTCGTCCCACGCCAGAGACATTGTTCCC
CTGCCACCCGTCGAGGGTGAGGGAGTTCCAACTTCGGTGCTCCGAGTGTG
ATCCAGGTTCCGCACGGAGAGCTCCGGCGACGTGGTGGGCCGCTTCAACG
AGCGCTTCATGCTCACTCTAGGGGACTGTAAGAGCAGCTTGATCTGTGAC
GATGAGCTCAACGTCCTCCCGCTGTCGTCCCACGCCAGAGACATTGTTCC
CCTGCCACCCGTCGAGGGTGAGGGAGTTCCAACTTCGGTGCTCCGAGTGT
GA
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