mRNA_H-elongata_contig188619.5167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188619.5167.1
Unique NamemRNA_H-elongata_contig188619.5167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188619.5167.1 vs. uniprot
Match: D8LH12_ECTSI (Zn-dependent peptidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH12_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.490e-21
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 MMETGTSKVDRVQLSRRIGSQTGGVYATFMTAQPFKDGVVSDPGALKQFLFLRGK 165
            MMETGTS++DRVQLSRRIGSQTGGVYATF+  QP   G V+DPGALKQ+LFLRGK
Sbjct:    1 MMETGTSEMDRVQLSRRIGSQTGGVYATFLADQPSAGGAVADPGALKQYLFLRGK 55
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BLAST of mRNA_H-elongata_contig188619.5167.1 vs. uniprot
Match: A0A6H5LB25_9PHAE (M16C_associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB25_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.240e-21
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 MMETGTSKVDRVQLSRRIGSQTGGVYATFMTAQPFKDGVVSDPGALKQFLFLRGK 165
            MMETGTSK+DRVQLSRRIGSQTGG+YATF+  QP   G V+DPGALKQ+LFLRGK
Sbjct:  669 MMETGTSKMDRVQLSRRIGSQTGGIYATFLADQPSAGGAVADPGALKQYLFLRGK 723
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BLAST of mRNA_H-elongata_contig188619.5167.1 vs. uniprot
Match: A0A835YY54_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY54_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 MMETGTSKVDRVQLSRRIGSQTGGVYATFMTAQPFKDG-VVSDPGALKQFLFLRGK 165
            ++ETG   +DRV+L+R IG+QTGGVY T +T      G V++    +  +LFLRGK
Sbjct:  658 LLETGAGSMDRVELTRHIGTQTGGVYCTSLTGTKMGGGGVIASSDDVVGYLFLRGK 713
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BLAST of mRNA_H-elongata_contig188619.5167.1 vs. uniprot
Match: A0A7S0AYE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AYE3_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 8.910e-5
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 MMETGTSKVDRVQLSRRIGSQTGGVYATFMTA----QPFKDGVVSDPGALKQFLFLRG 162
            MMETG   +D V LSRRIG+ TGGV A+FM++    +  ++GVVS+   +   + ++G
Sbjct:   89 MMETGAGDLDSVALSRRIGTYTGGVSASFMSSGVKPEGAEEGVVSEGNHMVTQIMIQG 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188619.5167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH12_ECTSI1.490e-2180.00Zn-dependent peptidase (Partial) (Fragment) n=1 Ta... [more]
A0A6H5LB25_9PHAE8.240e-2180.00M16C_associated domain-containing protein n=1 Tax=... [more]
A0A835YY54_9STRA1.040e-646.43Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A7S0AYE3_9STRA8.910e-543.10Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188619contigH-elongata_contig188619:192..356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D8LH12
KEGG koko:K06972
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031974,GO:0031975,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051604,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1026@1,KOG2019@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.8912392-CDS-H-elongata_contig188619:191..3561622930078.8912392-CDS-H-elongata_contig188619:191..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188619 192..356 -
1691679272.6377158-CDS-H-elongata_contig188619:191..3561691679272.6377158-CDS-H-elongata_contig188619:191..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188619 192..356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188619.5167.1prot_H-elongata_contig188619.5167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188619 192..356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188619.5167.1

>prot_H-elongata_contig188619.5167.1 ID=prot_H-elongata_contig188619.5167.1|Name=mRNA_H-elongata_contig188619.5167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MMETGTSKVDRVQLSRRIGSQTGGVYATFMTAQPFKDGVVSDPGALKQFL
FLRGK
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mRNA from alignment at H-elongata_contig188619:192..356-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188619.5167.1 ID=mRNA_H-elongata_contig188619.5167.1|Name=mRNA_H-elongata_contig188619.5167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig188619:192..356- (Himanthalia elongata Himel1 dioecious)
ATGATGGAAACGGGCACCTCGAAGGTGGATCGAGTACAGCTGTCTCGCCG
CATAGGCAGCCAGACGGGCGGCGTCTACGCGACGTTTATGACCGCGCAGC
CCTTCAAGGACGGTGTTGTGTCCGATCCGGGTGCGCTGAAGCAGTTCCTC
TTCCTTAGGGGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig188619:192..356-

>mRNA_H-elongata_contig188619.5167.1 ID=mRNA_H-elongata_contig188619.5167.1|Name=mRNA_H-elongata_contig188619.5167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig188619:192..356- (Himanthalia elongata Himel1 dioecious)
ATGATGGAAACGGGCACCTCGAAGGTGGATCGAGTACAGCTGTCTCGCCG
CATAGGCAGCCAGACGGGCGGCGTCTACGCGACGTTTATGACCGCGCAGC
CCTTCAAGGACGGTGTTGTGTCCGATCCGGGTGCGCTGAAGCAGTTCCTC
TTCCTTAGGGGAAAGATGATGGAAACGGGCACCTCGAAGGTGGATCGAGT
ACAGCTGTCTCGCCGCATAGGCAGCCAGACGGGCGGCGTCTACGCGACGT
TTATGACCGCGCAGCCCTTCAAGGACGGTGTTGTGTCCGATCCGGGTGCG
CTGAAGCAGTTCCTCTTCCTTAGGGGAAAG
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