mRNA_H-elongata_contig188571.5166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188571.5166.1
Unique NamemRNA_H-elongata_contig188571.5166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.910e-19
Identity = 65/147 (44.22%), Postives = 81/147 (55.10%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYS---CGIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+      G DVIGLQETRR G  +    GY     G + G  GK G  GV +AI+  + ++     R  E IS RL+KV L++ GR   VT  V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR  RR
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.580e-19
Identity = 64/147 (43.54%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTY----ITRAARPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+      G DVIGLQETRR G  +    GY     G + G   K+G+ GV +AI+      +    R  E IS RL+KV L++ GR   VT  V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR  RR
Sbjct:  180 VMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 325
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.100e-19
Identity = 64/147 (43.54%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+      G DVIGLQETRR G  +    GY     G + G   K+G  GV +AI+  +  +     R  E IS RL+KV L++ GR   VT  V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR  RR
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.060e-19
Identity = 64/147 (43.54%), Postives = 79/147 (53.74%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQNASN------KHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+      G DVIGLQETRR G  +    GY     G + G   K+G  GV +AI+  I  +     R  E IS RL+KV L++ GR   VT  V YAPTET  ++       K +FWT+LD A+ EVH    L VLM ANAR  RR
Sbjct:   34 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRR 179
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 8.900e-19
Identity = 64/147 (43.54%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+      G DVIGLQETRR G  +    GY     G + G   K+G  GV +AI+  +  +     R  E IS RL+KV L++ GR   VT  V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR  RR
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.230e-18
Identity = 64/147 (43.54%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+      G DVIGLQETRR G  +    GY     G + G   K+G  GV +AI+  +  +     R  E IS RL+KV L++ GR   VT  V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR  RR
Sbjct:  682 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 827
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.810e-18
Identity = 62/147 (42.18%), Postives = 77/147 (52.38%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQNASN------KHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+      G DVIGLQETRR G  +    GY     G + G   K+G  GV +AI+  +  +     R  E I  RL+KV L + GR   +T  V YAPTET   +       K +FWT+LD  + EVH H  L VLMDANAR  RR
Sbjct:  173 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRR 318
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.880e-18
Identity = 62/137 (45.26%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:   34 DVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            DVIGLQETRR G  +    GY     G + G   K+G  GV  AI+  +  +     R  E IS RL+KV L++ GR   VT  V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR  RR
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.200e-18
Identity = 61/143 (42.66%), Postives = 78/143 (54.55%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANAR 387
            ++      G DVIGLQETRR G  +    GY     G + G   K+G  GV +AI+  +  +     R  E IS RL+KV L++ GR   VT  V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR
Sbjct:   84 IMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANAR 225
[Close]
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.900e-18
Identity = 62/147 (42.18%), Postives = 79/147 (53.74%), Query Frame = 1 
Query:    4 VLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSC---GIQNG--GKKGQGGVALAIRTYITRAA----RPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQ------NASNKHAFWTSLDRAVEEVHRHKQLFVLMDANARMRRR 399
            V+  +   G DVIGLQETRR G  +    GY     G + G   K+G  GV +AI+  +  +     R  E IS RL+KV L++ G    V   V YAPTET       + + K +FWT+LD A+ EVH    L VLMDANAR  RR
Sbjct:  158 VMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188571.5166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ63_9PHAE1.910e-1944.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVN7_9PHAE2.580e-1943.54Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBZ6_9PHAE3.100e-1943.54Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KZE6_9PHAE7.060e-1943.54Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE8.900e-1943.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE1.230e-1843.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L660_9PHAE1.810e-1842.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMM5_9PHAE1.880e-1845.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGX2_9PHAE4.200e-1842.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A7_9PHAE5.900e-1842.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188571contigH-elongata_contig188571:427..846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.8196697-CDS-H-elongata_contig188571:426..7291622930078.8196697-CDS-H-elongata_contig188571:426..729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188571 427..729 -
1691679272.613058-CDS-H-elongata_contig188571:426..7291691679272.613058-CDS-H-elongata_contig188571:426..729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188571 427..729 -
1622930078.8378546-CDS-H-elongata_contig188571:747..8461622930078.8378546-CDS-H-elongata_contig188571:747..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188571 748..846 -
1691679272.6267567-CDS-H-elongata_contig188571:747..8461691679272.6267567-CDS-H-elongata_contig188571:747..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188571 748..846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188571.5166.1prot_H-elongata_contig188571.5166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188571 427..846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188571.5166.1

>prot_H-elongata_contig188571.5166.1 ID=prot_H-elongata_contig188571.5166.1|Name=mRNA_H-elongata_contig188571.5166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
DVLNAYDRLGYDVIGLQETRRNGHSAFNEAGYSCGIQNGGKKGQGGVALA
IRTYITRAARPPEFISDRLLKVTLELRGRVKAVTCFVAYAPTETQNASNK
HAFWTSLDRAVEEVHRHKQLFVLMDANARMRRRE
back to top

mRNA from alignment at H-elongata_contig188571:427..846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188571.5166.1 ID=mRNA_H-elongata_contig188571.5166.1|Name=mRNA_H-elongata_contig188571.5166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig188571:427..846- (Himanthalia elongata Himel1 dioecious)
GATGTTTTGAATGCATACGACCGACTGGGGTACGACGTTATCGGTCTGCA
GGAGACCCGCCGCAATGGACATTCAGCCTTCAATGAGGCTGGCTACTCCG
TGTAATGCAGTGGTGAGTGCGGTATCCAAAATGGTGGGAAGAAAGGTCAA
GGTGGAGTAGCGCTAGCTATTAGAACCTATATCACACGTGCTGCACGCCC
ACCGGAGTTTATCAGTGATCGCTTGCTAAAGGTTACACTTGAACTACGGG
GTCGAGTCAAGGCCGTTACGTGTTTCGTGGCGTATGCCCCCACTGAAACA
CAAAACGCTAGTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGT
GGAAGAGGTACATAGACACAAACAGCTATTCGTGTTGATGGATGCCAACG
CCCGTATGAGGAGGAGGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig188571:427..846-

>mRNA_H-elongata_contig188571.5166.1 ID=mRNA_H-elongata_contig188571.5166.1|Name=mRNA_H-elongata_contig188571.5166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig188571:427..846- (Himanthalia elongata Himel1 dioecious)
GATGTTTTGAATGCATACGACCGACTGGGGTACGACGTTATCGGTCTGCA
GGAGACCCGCCGCAATGGACATTCAGCCTTCAATGAGGCTGGCTACTCCG
ATGTTTTGAATGCATACGACCGACTGGGGTACGACGTTATCGGTCTGCAG
GAGACCCGCCGCAATGGACATTCAGCCTTCAATGAGGCTGGCTACTCCTG
CGGTATCCAAAATGGTGGGAAGAAAGGTCAAGGTGGAGTAGCGCTAGCTA
TTAGAACCTATATCACACGTGCTGCACGCCCACCGGAGTTTATCAGTGAT
CGCTTGCTAAAGGTTACACTTGAACTACGGGGTCGAGTCAAGGCCGTTAC
GTGTTTCGTGGCGTATGCCCCCACTGAAACACAAAACGCTAGTAATAAAC
ATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAAGAGGTACATAGACAC
AAACAGCTATTCGTGTTGATGGATGCCAACGCCCGTATGAGGAGGAGGGA
GTGCGGTATCCAAAATGGTGGGAAGAAAGGTCAAGGTGGAGTAGCGCTAG
CTATTAGAACCTATATCACACGTGCTGCACGCCCACCGGAGTTTATCAGT
GATCGCTTGCTAAAGGTTACACTTGAACTACGGGGTCGAGTCAAGGCCGT
TACGTGTTTCGTGGCGTATGCCCCCACTGAAACACAAAACGCTAGTAATA
AACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAAGAGGTACATAGA
CACAAACAGCTATTCGTGTTGATGGATGCCAACGCCCGTATGAGGAGGAG
GGAG
back to top