mRNA_H-elongata_contig18857.5164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18857.5164.1
Unique NamemRNA_H-elongata_contig18857.5164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18857.5164.1 vs. uniprot
Match: D7G9J2_ECTSI (Adenylate/guanylate cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.600e-27
Identity = 62/115 (53.91%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:    1 IAGDALIVLFHKGGVRISPDDFAELCVDCSRCGLDCAMSKGVGTGKIQNRGGQGGSGSCGTVFDNSEGLKVHVGIGCGRVRCFHVGSDLRGWQLVVSGEVFGSQVANALDASKAG 345
            IAGDALIVLFH+GG  +S  + A+LC+ C+RCG  CA S G   G                       L VHVG+GCGRV CFHVGSD  GWQLVVSG +F +QVA ALDAS AG
Sbjct:  112 IAGDALIVLFHQGGAGVSHFELADLCLACTRCGWHCAASVGTEAGGXXXX----------------XXLSVHVGVGCGRVSCFHVGSDRLGWQLVVSGGLFENQVAKALDASGAG 210
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BLAST of mRNA_H-elongata_contig18857.5164.1 vs. uniprot
Match: A0A6H5KFZ7_9PHAE (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.510e-20
Identity = 55/115 (47.83%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:    1 IAGDALIVLFHKGGVRISPDDFAELCVDCSRCGLDCAMSKGVGTGKIQNRGGQGGSGSCGTVFDNSEGLKVHVGIGCGRVRCFHVGSDLRGWQLVVSGEVFGSQVANALDASKAG 345
            IAGDALIVLFH+G   +S  + A+LC+ C+RCG  CA S G   G                               CGRV CFHVGSD  GWQLVVSG +F +QVA ALDAS AG
Sbjct:  202 IAGDALIVLFHQGEAGVSHFELADLCLACTRCGWHCAASVGTEAGNXXXX--------XXXXXXXXXXXXXXXXXXCGRVSCFHVGSDRLGWQLVVSGGLFENQVAKALDASGAG 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18857.5164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9J2_ECTSI3.600e-2753.91Adenylate/guanylate cyclase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KFZ7_9PHAE1.510e-2047.83Guanylate cyclase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18857contigH-elongata_contig18857:2191..3375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size347
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18857.5164.1prot_H-elongata_contig18857.5164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18857 2191..3374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.6885436-CDS-H-elongata_contig18857:2190..22261622930078.6885436-CDS-H-elongata_contig18857:2190..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 2191..2226 +
1691679272.5692782-CDS-H-elongata_contig18857:2190..22261691679272.5692782-CDS-H-elongata_contig18857:2190..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 2191..2226 +
1622930078.704006-CDS-H-elongata_contig18857:2825..31011622930078.704006-CDS-H-elongata_contig18857:2825..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 2826..3101 +
1691679272.5784793-CDS-H-elongata_contig18857:2825..31011691679272.5784793-CDS-H-elongata_contig18857:2825..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 2826..3101 +
1622930078.7176988-CDS-H-elongata_contig18857:3341..33741622930078.7176988-CDS-H-elongata_contig18857:3341..3374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 3342..3374 +
1691679272.5873392-CDS-H-elongata_contig18857:3341..33741691679272.5873392-CDS-H-elongata_contig18857:3341..3374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18857 3342..3374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18857.5164.1

>prot_H-elongata_contig18857.5164.1 ID=prot_H-elongata_contig18857.5164.1|Name=mRNA_H-elongata_contig18857.5164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
IAGDALIVLFHKGGVRISPDDFAELCVDCSRCGLDCAMSKGVGTGKIQNR
GGQGGSGSCGTVFDNSEGLKVHVGIGCGRVRCFHVGSDLRGWQLVVSGEV
FGSQVANALDASKAG
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mRNA from alignment at H-elongata_contig18857:2191..3375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18857.5164.1 ID=mRNA_H-elongata_contig18857.5164.1|Name=mRNA_H-elongata_contig18857.5164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-elongata_contig18857:2191..3375+ (Himanthalia elongata Himel1 dioecious)
ATCGCTGGCGACGCCCTGATCGTGCTTTTCCACAAGGCACGTTCGAGTAT
CGGTCTTGGAAAAAACAAAGGAGATATTTTATACCGTAGTAAATATGGAG
TGCAAGAGGGAGAGTTTTGGAAACACGAAGGCAGGGAACCAGCCACATTT
AGTTCCAGCGATGCCGACGAGTTTGGTCGTGGGAAATGCTCCCTCGTTTT
TCAAACCCTTATAATATTCGAACAAAGCGCGCGCGAAATAGGATGTTGCA
GCACCATGATAGACGGCGTTTACCGATGCGACATCATACGGAACAAAGAT
TCTCTACCACCAATATGTCATGTCTCTTGCGGGGAAAAGGGGGAGGGGCA
TTACTATATTGCTCGTGGGTTTGAACGAAAGATGCGCGTGCTATCCTCGC
GCTATCCTCACGCATTTGGTCGTGAGAAATTTCGGGAAGGAGCTTCAACA
GCGTCTCAATTCCCATATAATTTTCATTTCTTACCGATTGATCGATAGCG
AACCGTACCGTGCACGCCAAGAGACGGGGCGAGAGAGGTAAGGAGAAAGA
GGGAGGATCAAGTCTAAGAAGTCGGACCTGTTGACACGTGCGCTGCATTG
TACGTTGCTCTACCTTATATATTAAACGCTTTCAGGGCGGTGTGAGGATC
TCTCCTGATGATTTCGCAGAGCTTTGCGTGGATTGCAGCCGCTGTGGGCT
GGACTGTGCAATGTCTAAAGGGGTCGGGACCGGCAAGATTCAAAACCGCG
GCGGCCAAGGCGGTAGCGGAAGCTGCGGCACCGTCTTCGACAACAGCGAA
GGGCTCAAGGTGCACGTGGGCATCGGTTGCGGGCGGGTGAGGTGTTTCCA
CGTGGGCAGCGACCTGAGGGGTTGGCAGCTTGTCGTCAGCGGCGAGGTAT
TCGGGAGCCAGGTGAGAGAGAGATTTTACATATATTTTGTTGAGATTTTC
CCTTTTGGCTCCTTCCGAGCTGCACACATTAATACCCATGTTAACTGACA
CACTACATACATGCATTAGGTACTTCGGTATACAATCTGCCCCATAAAAT
GAGAGGGGGGGGGAGGGGAAAGGAGGGCAAATCTGAACGAAAACACGGAA
AAGCAACAGTTTTCCGAATTTCATTCGAATCTCGCCTTGTCACACGCGTA
GGTGGCAAACGCACTGGATGCCTCGAAAGCCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig18857:2191..3375+

>mRNA_H-elongata_contig18857.5164.1 ID=mRNA_H-elongata_contig18857.5164.1|Name=mRNA_H-elongata_contig18857.5164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig18857:2191..3375+ (Himanthalia elongata Himel1 dioecious)
ATCGCTGGCGACGCCCTGATCGTGCTTTTCCACAAGATCGCTGGCGACGC
CCTGATCGTGCTTTTCCACAAGGGCGGTGTGAGGATCTCTCCTGATGATT
TCGCAGAGCTTTGCGTGGATTGCAGCCGCTGTGGGCTGGACTGTGCAATG
TCTAAAGGGGTCGGGACCGGCAAGATTCAAAACCGCGGCGGCCAAGGCGG
TAGCGGAAGCTGCGGCACCGTCTTCGACAACAGCGAAGGGCTCAAGGTGC
ACGTGGGCATCGGTTGCGGGCGGGTGAGGTGTTTCCACGTGGGCAGCGAC
CTGAGGGGTTGGCAGCTTGTCGTCAGCGGCGAGGTATTCGGGAGCCAGGG
CGGTGTGAGGATCTCTCCTGATGATTTCGCAGAGCTTTGCGTGGATTGCA
GCCGCTGTGGGCTGGACTGTGCAATGTCTAAAGGGGTCGGGACCGGCAAG
ATTCAAAACCGCGGCGGCCAAGGCGGTAGCGGAAGCTGCGGCACCGTCTT
CGACAACAGCGAAGGGCTCAAGGTGCACGTGGGCATCGGTTGCGGGCGGG
TGAGGTGTTTCCACGTGGGCAGCGACCTGAGGGGTTGGCAGCTTGTCGTC
AGCGGCGAGGTATTCGGGAGCCAGGTGGCAAACGCACTGGATGCCTCGAA
AGCCGGAGTGGCAAACGCACTGGATGCCTCGAAAGCCGGA
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