mRNA_H-elongata_contig1885.5158.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1885.5158.1
Unique NamemRNA_H-elongata_contig1885.5158.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: D8LKM6_ECTSI (Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM6_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 2.350e-114
Identity = 172/215 (80.00%), Postives = 200/215 (93.02%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFAL 666
            P+ALNALNS LI+DIC AAE FE +P VGA+VLTG++RAFAAGADIKEMA+++F+EAYG++ FKE+ARL  IRKP+IAAVNGYALGGGCE+AMMCDIILAG+KA FGQPEITLGVIPGWGGTQRL+RAVGKSKAMEM+LTG+Q+DA QAER+GLVA+VYP+E+LV++AVA+AAKI SMSLPVALMAKEA NAA+E TLAEG RLERRMFHS FAL
Sbjct:   58 PKALNALNSGLIQDICSAAEAFEGDPEVGAIVLTGSDRAFAAGADIKEMASLTFSEAYGENRFKEFARLTSIRKPIIAAVNGYALGGGCELAMMCDIILAGEKAMFGQPEITLGVIPGWGGTQRLIRAVGKSKAMEMVLTGNQIDAHQAEREGLVARVYPAEELVDQAVAIAAKIGSMSLPVALMAKEATNAAYEGTLAEGCRLERRMFHSCFAL 272          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A839N9P3_9MICO (Enoyl-CoA hydratase n=2 Tax=Flexivirga oryzae TaxID=1794944 RepID=A0A839N9P3_9MICO)

HSP 1 Score: 290 bits (742), Expect = 3.850e-95
Identity = 143/214 (66.82%), Postives = 184/214 (85.98%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFA 663
            P+ALNALNS ++ ++  AAE+ +++PGVGA+++TG+E+AFAAGADIKEMA+ +FA+ YG++LF  W RL ++R P+IAAV GYALGGGCE+AM+CD+I+A D AKFGQPEITLGVIPG GG+QRL RAVGK+KAM+++LTG Q+ A +AER GLVA+V P+E L+  A  +A KIASMSLP+A+MAK+AVNAAFE TLAEGVRLERR FH+AFA
Sbjct:   23 PKALNALNSEVMAEVVAAAEELDQDPGVGAIIITGSEKAFAAGADIKEMADKTFAQVYGENLFGAWERLTRVRTPLIAAVAGYALGGGCELAMLCDLIIAADTAKFGQPEITLGVIPGMGGSQRLTRAVGKAKAMDLVLTGRQMGADEAERSGLVARVVPAEGLLAAAKEVADKIASMSLPIAMMAKDAVNAAFETTLAEGVRLERRSFHAAFA 236          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A3M9MBG4_9MICO (Enoyl-CoA hydratase n=1 Tax=Flexivirga caeni TaxID=2294115 RepID=A0A3M9MBG4_9MICO)

HSP 1 Score: 285 bits (729), Expect = 3.600e-93
Identity = 140/214 (65.42%), Postives = 180/214 (84.11%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFA 663
            PQALNALNS ++ ++  AAE+ + +P +GA+VLTG++RAFAAGADIKEMA  +FA+AYG DLF  W RL ++R P+I AV GYALGGGCE+AM+CD+++A D AKFGQPEITLGVIPG GG+QRL RA+GK+KAM+++LTG Q+ A +AER GLV++V P EDL+  A  +A +IASMSLP+A++AK+AVNAAFE TLAEG+RLERR FH+AFA
Sbjct:   23 PQALNALNSEMMIEVLAAAEELDRDPRIGAIVLTGSDRAFAAGADIKEMAQQTFAQAYGGDLFGAWERLARVRTPVIGAVAGYALGGGCELAMLCDLLIAADNAKFGQPEITLGVIPGMGGSQRLTRAIGKAKAMDLVLTGRQIGADEAERSGLVSRVVPLEDLLSTAREIAERIASMSLPIAMLAKDAVNAAFETTLAEGIRLERRSFHAAFA 236          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A835ZGP5_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP5_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.010e-92
Identity = 143/210 (68.10%), Postives = 173/210 (82.38%), Query Frame = 1
Query:   34 NALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFA 663
            NAL + +I ++C A   F+E+P VGA+V+TG ++ FAAGADI EM  +SF++ Y QD FK+WA L ++RKP+IAAVNGYALGGGCE+AMMCDIILAGD AKFGQPEI LGVIPGWGGTQRLVRAVGKSKAMEM+LTGS +DA++A  DGLV++V   E +VE AVA+  KIASMS P  LMAKEAVN+A+E TL EG+ +ERRMFHS FA
Sbjct:   58 NALCNGMIVELCTAVTAFDEDPAVGAIVITGGDKVFAAGADITEMVGLSFSDCYNQDKFKDWAALTRVRKPLIAAVNGYALGGGCELAMMCDIILAGDDAKFGQPEINLGVIPGWGGTQRLVRAVGKSKAMEMVLTGSMIDAKRANWDGLVSRVVEPEKVVETAVALGNKIASMSRPSVLMAKEAVNSAYELTLTEGLHVERRMFHSLFA 267          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A2D4CC62_PYTIN (Enoyl-CoA hydratase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC62_PYTIN)

HSP 1 Score: 284 bits (727), Expect = 1.410e-92
Identity = 145/214 (67.76%), Postives = 178/214 (83.18%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFA 663
            P+ALNAL + LI ++ GAA  F+ N  VGA+V+TG+++AFAAGADIKEMAN SF EAY  ++F +W  + K+ KP+IAAVNGYALGGGCE+AM+CD+I+AGDKAKFGQPEITLG IPG GGTQRL+RAVGKSKAMEMILTG+ +DA QAERDGLVA+V P++ L+EEA+  A KIAS S PV  MAKEAVNAAFE +L EG++ E R+F S+FA
Sbjct:   43 PKALNALCTGLIHEVNGAAHAFDANEKVGAIVITGSDKAFAAGADIKEMANKSFVEAYKSNMFADWGDITKVTKPVIAAVNGYALGGGCELAMLCDMIIAGDKAKFGQPEITLGTIPGCGGTQRLIRAVGKSKAMEMILTGNMIDAHQAERDGLVARVVPADKLLEEALKTADKIASFSQPVVKMAKEAVNAAFEQSLQEGLKYESRLFWSSFA 256          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A839EFY1_9HYPH (Enoyl-CoA hydratase n=22 Tax=Bacteria TaxID=2 RepID=A0A839EFY1_9HYPH)

HSP 1 Score: 280 bits (717), Expect = 2.300e-91
Identity = 140/215 (65.12%), Postives = 175/215 (81.40%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFAL 666
            PQALNALNSAL+ ++  A EDFE++  +GA+V+TG+E+AFAAGADIKEM  + FA+AY  D F EW R+ ++RKP+IAAV GYALGGGCE+AMMCD I+A D AKFGQPEITLGV+PG GG+QRL R VGKSKAM++ LTG  +DA +AER GLVA+V P+ +L+EEA+  A KIAS SLPV +M KE +N A+E TL+EG+R ERR+FHS FAL
Sbjct:   22 PQALNALNSALLAELSAALEDFEKDNRIGAVVITGSEKAFAAGADIKEMQTLEFADAYLSDYFSEWERVTRLRKPLIAAVAGYALGGGCELAMMCDFIIAADTAKFGQPEITLGVMPGMGGSQRLTRFVGKSKAMDLCLTGRMMDAVEAERSGLVARVVPAGELIEEALKAAKKIASFSLPVVMMTKETINRAYETTLSEGLRFERRVFHSMFAL 236          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A7Z0DAR6_9ACTN (Enoyl-CoA hydratase n=1 Tax=Naumannella cuiyingiana TaxID=1347891 RepID=A0A7Z0DAR6_9ACTN)

HSP 1 Score: 279 bits (714), Expect = 7.240e-91
Identity = 140/214 (65.42%), Postives = 174/214 (81.31%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFA 663
            P+ALNALN  L++++  AA  F+ +P VGA+V+TG+E+AFAAGADIKEM + SF++ YG DLF +W R+ KIRKP+IAAV GYALGGGCE+AMMCD+I+A D AKFGQPEI LGVIPG GGTQRL RAVGKSKAM+++LTG  +DA +AER GLVA++ P+ +LV+ AVA+A  I + SLPV +MAKEAVN A E TL+EGVR ERR F S FA
Sbjct:   25 PKALNALNRDLMEEVIAAARAFDTDPAVGAIVITGSEKAFAAGADIKEMQSRSFSDVYGGDLFSDWDRITKIRKPIIAAVAGYALGGGCELAMMCDLIIAADSAKFGQPEINLGVIPGMGGTQRLTRAVGKSKAMDLVLTGRMMDAEEAERSGLVARIVPAAELVDAAVAVAETIGAKSLPVVMMAKEAVNVALETTLSEGVRFERRTFFSTFA 238          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A1M2YY52_9HYPH (Enoyl-CoA hydratase n=1 Tax=Rhizobiales bacterium 65-79 TaxID=1895815 RepID=A0A1M2YY52_9HYPH)

HSP 1 Score: 279 bits (713), Expect = 9.290e-91
Identity = 141/215 (65.58%), Postives = 171/215 (79.53%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFAL 666
            P+ALNALNS ++ ++  A   FE +PG+GA+V+TG+E+AFAAGADIKEM   SFAEAY +D F  W  L +IRKP++AAV GYALGGGCE+AMMCD ILA D AKFGQPEITLGV+PG GG+QRL R VGKSKAM+M LTG  +DA +AER GLV++V P+ DL+EEAV  A KIA  SLP  +M KEAVN A+E TL+EG+R ERR+FHS FAL
Sbjct:   22 PKALNALNSTVLAEVLAALNAFEADPGIGAIVITGSEKAFAAGADIKEMQPKSFAEAYMEDFFAGWEGLTRIRKPIVAAVAGYALGGGCELAMMCDFILAADSAKFGQPEITLGVMPGMGGSQRLTRFVGKSKAMDMCLTGRMMDAGEAERSGLVSRVVPAADLIEEAVKTAEKIAGFSLPAVMMVKEAVNRAYETTLSEGLRFERRVFHSMFAL 236          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A839U037_9HYPH (Enoyl-CoA hydratase n=3 Tax=Phyllobacterium TaxID=28100 RepID=A0A839U037_9HYPH)

HSP 1 Score: 278 bits (712), Expect = 1.320e-90
Identity = 138/215 (64.19%), Postives = 176/215 (81.86%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFAL 666
            P+ALNALNSAL+ ++  A E F+++  +GA+VLTG+E+AFAAGADIKEM  + FA+AY  D F EW R+ ++RKP+IAAV GYALGGGCE+AMMCD I+A D AKFGQPEITLGV+PG GG+QRL R VGKSK+M+M LTG  +DA +AER GLV++V P+ +L++EA+ +AAKIAS SLPV +M KE +N A+E TLAEG+R ERR+FHS FAL
Sbjct:   22 PKALNALNSALLAELAEALEAFDKDNTIGAIVLTGSEKAFAAGADIKEMQTLEFADAYLGDYFSEWERVTRLRKPLIAAVAGYALGGGCELAMMCDFIIAADNAKFGQPEITLGVMPGMGGSQRLTRFVGKSKSMDMCLTGRMMDANEAERSGLVSRVVPANELIDEAMKVAAKIASFSLPVVMMTKETINRAYETTLAEGLRFERRVFHSMFAL 236          
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Match: A0A5D6XQI8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQI8_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.360e-90
Identity = 141/214 (65.89%), Postives = 177/214 (82.71%), Query Frame = 1
Query:   22 PQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAGADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAMMCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQLDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAAFENTLAEGVRLERRMFHSAFA 663
            P+ALNAL S LI+++ GAA+ F+ +  +GA+++TG+++AFAAGADIKEMA   F +AY  ++F  W  + KI KP+IAAVNGYALGGGCE+AM+CD+I+AGDKAKFGQPEITLG IPG GGTQRL+RAVGK+KAMEMILTG+ +DA QAERDGLVA+V P++ L+EEA+  A KIAS S PV  MAKEAVNA+FE +L EGVR E R+F S+FA
Sbjct:   44 PKALNALCSPLIEELNGAAQAFDADENIGAIIVTGSDKAFAAGADIKEMAEKQFVDAYKSNMFANWGDITKISKPVIAAVNGYALGGGCELAMLCDLIIAGDKAKFGQPEITLGTIPGCGGTQRLIRAVGKAKAMEMILTGNMIDAHQAERDGLVARVVPADKLLEEALKTADKIASFSQPVVKMAKEAVNASFEQSLQEGVRFESRLFWSSFA 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1885.5158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKM6_ECTSI2.350e-11480.00Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus... [more]
A0A839N9P3_9MICO3.850e-9566.82Enoyl-CoA hydratase n=2 Tax=Flexivirga oryzae TaxI... [more]
A0A3M9MBG4_9MICO3.600e-9365.42Enoyl-CoA hydratase n=1 Tax=Flexivirga caeni TaxID... [more]
A0A835ZGP5_9STRA1.010e-9268.10ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A2D4CC62_PYTIN1.410e-9267.76Enoyl-CoA hydratase, mitochondrial n=1 Tax=Pythium... [more]
A0A839EFY1_9HYPH2.300e-9165.12Enoyl-CoA hydratase n=22 Tax=Bacteria TaxID=2 RepI... [more]
A0A7Z0DAR6_9ACTN7.240e-9165.42Enoyl-CoA hydratase n=1 Tax=Naumannella cuiyingian... [more]
A0A1M2YY52_9HYPH9.290e-9165.58Enoyl-CoA hydratase n=1 Tax=Rhizobiales bacterium ... [more]
A0A839U037_9HYPH1.320e-9064.19Enoyl-CoA hydratase n=3 Tax=Phyllobacterium TaxID=... [more]
A0A5D6XQI8_9STRA1.360e-9065.89Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1885contigH-elongata_contig1885:3246..6308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.1
Seed ortholog evalue3e-92
Seed eggNOG ortholog2880.D8LKM6
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
EggNOG free text desc.enoyl-CoA hydratase activity
EggNOG OGsCOG1024@1,KOG1680@2759
EC4.2.1.17
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionenoyl-CoA hydratase
Ec32 orthologEc-16_003560.1
Exons5
Model size876
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1885.5158.1prot_H-elongata_contig1885.5158.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1885 3246..6254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.1077478-CDS-H-elongata_contig1885:3245..33901622930078.1077478-CDS-H-elongata_contig1885:3245..3390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 3246..3390 +
1691679272.2863314-CDS-H-elongata_contig1885:3245..33901691679272.2863314-CDS-H-elongata_contig1885:3245..3390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 3246..3390 +
1622930078.120965-CDS-H-elongata_contig1885:4069..41701622930078.120965-CDS-H-elongata_contig1885:4069..4170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 4070..4170 +
1691679272.2960796-CDS-H-elongata_contig1885:4069..41701691679272.2960796-CDS-H-elongata_contig1885:4069..4170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 4070..4170 +
1622930078.136096-CDS-H-elongata_contig1885:4854..49811622930078.136096-CDS-H-elongata_contig1885:4854..4981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 4855..4981 +
1691679272.3037472-CDS-H-elongata_contig1885:4854..49811691679272.3037472-CDS-H-elongata_contig1885:4854..4981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 4855..4981 +
1622930078.153394-CDS-H-elongata_contig1885:5326..54311622930078.153394-CDS-H-elongata_contig1885:5326..5431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 5327..5431 +
1691679272.3113647-CDS-H-elongata_contig1885:5326..54311691679272.3113647-CDS-H-elongata_contig1885:5326..5431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 5327..5431 +
1622930078.1721363-CDS-H-elongata_contig1885:5910..62541622930078.1721363-CDS-H-elongata_contig1885:5910..6254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 5911..6254 +
1691679272.3189774-CDS-H-elongata_contig1885:5910..62541691679272.3189774-CDS-H-elongata_contig1885:5910..6254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1885 5911..6254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.206307-UTR-H-elongata_contig1885:6254..63081622930078.206307-UTR-H-elongata_contig1885:6254..6308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1885 6255..6308 +
1691679272.3263876-UTR-H-elongata_contig1885:6254..63081691679272.3263876-UTR-H-elongata_contig1885:6254..6308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1885 6255..6308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1885.5158.1

>prot_H-elongata_contig1885.5158.1 ID=prot_H-elongata_contig1885.5158.1|Name=mRNA_H-elongata_contig1885.5158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp
MQRNSRVPQALNALNSALIKDICGAAEDFEENPGVGALVLTGNERAFAAG
ADIKEMANVSFAEAYGQDLFKEWARLEKIRKPMIAAVNGYALGGGCEIAM
MCDIILAGDKAKFGQPEITLGVIPGWGGTQRLVRAVGKSKAMEMILTGSQ
LDARQAERDGLVAKVYPSEDLVEEAVAMAAKIASMSLPVALMAKEAVNAA
FENTLAEGVRLERRMFHSAFALVSMTWCGGSVDGDRSLIWLQGPEQRQFC
VIPLVNTYTPKPKTPLLLLPTPS*
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mRNA from alignment at H-elongata_contig1885:3246..6308+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1885.5158.1 ID=mRNA_H-elongata_contig1885.5158.1|Name=mRNA_H-elongata_contig1885.5158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3063bp|location=Sequence derived from alignment at H-elongata_contig1885:3246..6308+ (Himanthalia elongata Himel1 dioecious)
ATGCAACGCAATTCCCGCGTTCCACAGGCTCTGAACGCGCTTAACAGCGC TCTGATAAAGGATATATGTGGGGCAGCGGAAGATTTCGAAGAGAATCCCG GGGTCGGTGCTCTGGTTCTCACCGGCAACGAACGCGCTTTCGCTGGTGAG CATTTCGACGTTGAAACTCCTGACCAGAGGCGGTATTTTTGGATATTGTT GCGCGTTGTCCTCCCGTTTTCATCGTTCCATGTTTCAGACGGCGGTGCTC GAGGGTGATCTGTTTGTCGTTTCTCGTTGTTTTTGTTGTTTAATTTGTTT TTGCTTTTCCCTCGACAATTTCTTAACAAATCCATAACGGGTGCTACAAA CAGTACCGCAATATCCATGAACAGTAAAGAGCTACTACAGTACCAGGTAC GTGCGTGATGCCACCACTCGCACGACACAGACCTCGAAAGCCTAGCAGCG AAAAGGAGATTACCGTGGCTGTGGGCCAGGCCGCCGGGTCCGATCCTCAA AAAGAATGCATCGATATCTCGTGACTGGGCAAGATCTTGGACATGCACTC CTTAGCCGACTTCTATCCAGTCTGCGCTACTCGCCTTCGTACCTTTCTTG TTTCTCAATATCTCTATGTTGGGAGCTATAAATCTACTGCCACGTCATCG TATTCGCCTCAAGAGGCACGCAAGCCTCGTGCTCCCGCCCCCCCCCCCCC CACCCCCGAGTCCTCTCCTCGTGGGAAATATTCCTGGACCAACTCTAGCG TCTAGGGATGCGCCTGCTACGTTACGTCTACAATGCTTGTCTCGACGATC GATCCCTTTCTGCGACGTTAATAGCGGGAGCAGACATCAAGGAGATGGCG AACGTCTCTTTCGCCGAAGCATACGGGCAGGACTTGTTCAAAGAATGGGC GAGGCTTGAGAAAATCAGGAAGCCGGTGCGCGAGGGGTGCGATTGACTCG ATGTCGATGCCAATACCGAACACTCAAATATTTCTCGGAAAACAAAAGCC AATTTGTCATTTTAGGGGGAGGGGAGGGGAGGGGAGGGAGGGGGAGGGGG TAGAGGAGCCGATGAATTAGTTCTATTCACTTNNNNNNNNNNGGTATTTA CGGGATGGCGGTTAAAAACACAAACACACAAATTTTTCCAGAAAAACAAA AGCCAATTTTGGTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGTAGAGGAGCCGATGAATTAGTTCTATTCACTTTCTCCGGGGAAAT TGACATTGACCCTACCCCGTGCGCGAATCGTTTTTCGTGCCCAACGTTTG TCCTTTGCTTTTCGGCCTGGAGAAAGGCGTGGCGCCTGGACAGAAGTGTG TATGCTTCAAAGTACTCTAGTGCACGATCATATAGTAGTATTGCCGTAAT TATCGGGGGGTTTTAATTGCGTTGGAGAATCGCCAAGGTGTTGTTGCTAA ATCAGCGTAATTTGAAATGGTATATAGATATGCAGAAGTGTCATTTGAAA TGGCATTTCCATCACGTGCACCGCGCGCGGCGATATCTGCTGTTGCTGTT GTTGTATTTGTCGATTTCTTGCTTCGTTTTGCCGTTTAACCTCCCCATCC TAAAACTAGATGATTGCCGCCGTAAACGGATACGCCTTGGGTGGGGGCTG CGAGATAGCCATGATGTGCGACATCATCCTGGCCGGGGATAAGGCCAAGT TCGGGCAGCCCGAGATCACTCTTGGCGTCATACCAGGTAGAGGGGAAAAG AAGCCCTGGTCGCTGCCTAACGCGTAGTGGCGGGTAGAGGAGCACATCAG TCTTGTTGGGAACTCTCCTCCGACGAAGAGGTCTCTCCTGTCCTCGCTTG ACCCGGTGATTTTTTCGAAGTGCGATCTGTGATGGCTTGGTCGATCCGTC GTGGCGACGCCCAACCGATATCCAAGATCCGCTACAGACAAACCGGTATG TCGGTAGACGACTCGGTTGTATCACTAGTAAGCTTTGACTAGCGTTCTGT GCCGCAAAAGTGTCCGGTGCGGACGGATAACGGAAACCACCGGAGCCTCG TCTCTGCGGCGCTCCGTCCTCACGAGAGCAGGGTGGGGGGGCACGCAGCG ACTGGTCAGGGCGGTGGGAAAATCGAAGGCAATGGAGATGATCCTCACGG GGAGCCAGCTGGACGCGCGCCAGGCCGAGAGAGACGGTAAGCGCCCCCGC CCTGTCCACACCATGGCCGCACCAGATTTCACGTGAGATGCGCTTGCGCC CCCTCCCGCCCGACCGGCTGCTATATAGACGCGCTAACAGCGGACCAGTC AGGGGCTCCAAGCTCTCGACAAGGCCACAGTGCCTACCATAGGGGATAGG GGATAAAACACCCCTCCGGGTATACGGGACAGGGGATAAGAAATGGGATA TGGGTCTCCCTGCCCGATGAACGCCGCAAAAACTACACACAGCAGCAACA AACGTAAAGCATTTTGAGAAGATTTTGCAGGAAAGCTTTCCAAAACGCTA CGTCACGTAAAGGGGAAAATGGCGGGGGGCATTTTATGCATATTCCCTGC GTGTGTCACATCCTAGTTGCAGCACACCTCTTCCTGTGGCCTGCGATACG ACGTGGACTCTCATTCCCCTACTTCTTGGGTATGTGGATGGCACTGCTCG CTCCGTCTCCCGCAGGGTTGGTGGCGAAGGTCTACCCCTCGGAAGACCTC GTTGAAGAAGCGGTCGCGATGGCGGCCAAGATCGCGTCGATGTCCCTGCC GGTGGCGCTCATGGCGAAGGAAGCGGTCAACGCGGCGTTCGAAAACACGC TGGCAGAGGGCGTGCGTCTCGAGCGCAGGATGTTCCACTCTGCCTTCGCT CTGGTCAGTATGACTTGGTGTGGTGGGAGTGTGGATGGTGATCGTAGCCT GATTTGGTTGCAGGGACCTGAGCAGAGGCAGTTTTGCGTCATACCCTTGG TAAATACATATACCCCTAAGCCAAAGACTCCTCTCCTACTCCTTCCCACC CCGTCGTAACCATACAAGTGCGATCGGTCACGGGGGGAGCTTTTTACTGC TCTAGTACCCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig1885:3246..6308+

>mRNA_H-elongata_contig1885.5158.1 ID=mRNA_H-elongata_contig1885.5158.1|Name=mRNA_H-elongata_contig1885.5158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig1885:3246..6308+ (Himanthalia elongata Himel1 dioecious)
ATGCAACGCAATTCCCGCGTTCCACAGGCTCTGAACGCGCTTAACAGCGC
TCTGATAAAGGATATATGTGGGGCAGCGGAAGATTTCGAAGAGAATCCCG
GGGTCGGTGCTCTGGTTCTCACCGGCAACGAACGCGCTTTCGCTGATGCA
ACGCAATTCCCGCGTTCCACAGGCTCTGAACGCGCTTAACAGCGCTCTGA
TAAAGGATATATGTGGGGCAGCGGAAGATTTCGAAGAGAATCCCGGGGTC
GGTGCTCTGGTTCTCACCGGCAACGAACGCGCTTTCGCTGCGGGAGCAGA
CATCAAGGAGATGGCGAACGTCTCTTTCGCCGAAGCATACGGGCAGGACT
TGTTCAAAGAATGGGCGAGGCTTGAGAAAATCAGGAAGCCGCGGGAGCAG
ACATCAAGGAGATGGCGAACGTCTCTTTCGCCGAAGCATACGGGCAGGAC
TTGTTCAAAGAATGGGCGAGGCTTGAGAAAATCAGGAAGCCGATGATTGC
CGCCGTAAACGGATACGCCTTGGGTGGGGGCTGCGAGATAGCCATGATGT
GCGACATCATCCTGGCCGGGGATAAGGCCAAGTTCGGGCAGCCCGAGATC
ACTCTTGGCGTCATACCAGATGATTGCCGCCGTAAACGGATACGCCTTGG
GTGGGGGCTGCGAGATAGCCATGATGTGCGACATCATCCTGGCCGGGGAT
AAGGCCAAGTTCGGGCAGCCCGAGATCACTCTTGGCGTCATACCAGGGTG
GGGGGGCACGCAGCGACTGGTCAGGGCGGTGGGAAAATCGAAGGCAATGG
AGATGATCCTCACGGGGAGCCAGCTGGACGCGCGCCAGGCCGAGAGAGAC
GGGTGGGGGGGCACGCAGCGACTGGTCAGGGCGGTGGGAAAATCGAAGGC
AATGGAGATGATCCTCACGGGGAGCCAGCTGGACGCGCGCCAGGCCGAGA
GAGACGGGTTGGTGGCGAAGGTCTACCCCTCGGAAGACCTCGTTGAAGAA
GCGGTCGCGATGGCGGCCAAGATCGCGTCGATGTCCCTGCCGGTGGCGCT
CATGGCGAAGGAAGCGGTCAACGCGGCGTTCGAAAACACGCTGGCAGAGG
GCGTGCGTCTCGAGCGCAGGATGTTCCACTCTGCCTTCGCTCTGGTCAGT
ATGACTTGGTGTGGTGGGAGTGTGGATGGTGATCGTAGCCTGATTTGGTT
GCAGGGACCTGAGCAGAGGCAGTTTTGCGTCATACCCTTGGTAAATACAT
ATACCCCTAAGCCAAAGACTCCTCTCCTACTCCTTCCCACCCCGTCGTAA
GGTTGGTGGCGAAGGTCTACCCCTCGGAAGACCTCGTTGAAGAAGCGGTC
GCGATGGCGGCCAAGATCGCGTCGATGTCCCTGCCGGTGGCGCTCATGGC
GAAGGAAGCGGTCAACGCGGCGTTCGAAAACACGCTGGCAGAGGGCGTGC
GTCTCGAGCGCAGGATGTTCCACTCTGCCTTCGCTCTGGTCAGTATGACT
TGGTGTGGTGGGAGTGTGGATGGTGATCGTAGCCTGATTTGGTTGCAGGG
ACCTGAGCAGAGGCAGTTTTGCGTCATACCCTTGGTAAATACATATACCC
CTAAGCCAAAGACTCCTCTCCTACTCCTTCCCACCCCGTCGTAA
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