mRNA_H-elongata_contig18845.5156.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.240e-42 Identity = 102/286 (35.66%), Postives = 164/286 (57.34%), Query Frame = 1
Query: 1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVK--KGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
+KDMG AR+ + I + + L I H+ Y E +++ F + K P V L+KA+E + E+K +M+ P R VG+LM++A T DI+ AV ++RF ENPG H A IK++++ L TKD GI Y G G L Y++ D+ D R SV+G++L+L + W Q A +++AEY+ LS+ VKE + +++ K + A +VG ++EDN+G + LA N RTKHID+ ++ +R+ + +V + YV + +Q AD +TK L ++
Sbjct: 24 IKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSSK 305
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 155 bits (393), Expect = 2.500e-40 Identity = 98/286 (34.27%), Postives = 163/286 (56.99%), Query Frame = 1
Query: 1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVST-LSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQRF 855
+K++G ++ + I +R L I+ Y + +VE F+ + + S LSKA+ R+ ++K EM K P R +G L ++A T DIA AV ++RF ENPG H A I+++++ T+D+GI+YG V+ + D+G +D R SV+G+V+++ G I + + Q A +S+AEY+ LS +EV+ + + + +++ + V+EDN+G I LA N RTKHID+ H+ VRD ++++YV ++ Q AD+LTK L T+RF
Sbjct: 215 IKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPI-QVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRF 499
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 158 bits (400), Expect = 4.770e-40 Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query: 4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
K++G ++ C I R+ +A L+I Y + MVE FDVK S+IPAT K E+ E +P REA+G++MW++T + D++ AVRAVAR P H A+ KI+ + T+D GI Y R G L + VY + + D R SV+G+ + +S + Q + + +++AEY+ E VKE L + V F+ + V EDN+G I L N +S RTKHIDV ++ +R + + + +V + +QHADLLTK L
Sbjct: 960 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 158 bits (400), Expect = 5.000e-40 Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query: 4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
K++G ++ C I R+ +A L+I Y + MVE FDVK S+IPAT K E+ E +P REA+G++MW++T + D++ AVRAVAR P H A+ KI+ + T+D GI Y R G L + VY + + D R SV+G+ + +S + Q + + +++AEY+ E VKE L + V F+ + V EDN+G I L N +S RTKHIDV ++ +R + + + +V + +QHADLLTK L
Sbjct: 1339 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 158 bits (400), Expect = 5.030e-40 Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query: 4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
K++G ++ C I R+ +A L+I Y + MVE FDVK S+IPAT K E+ E +P REA+G++MW++T + D++ AVRAVAR P H A+ KI+ + T+D GI Y R G L + VY + + D R SV+G+ + +S + Q + + +++AEY+ E VKE L + V F+ + V EDN+G I L N +S RTKHIDV ++ +R + + + +V + +QHADLLTK L
Sbjct: 1359 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 158 bits (400), Expect = 5.070e-40 Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query: 4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
K++G ++ C I R+ +A L+I Y + MVE FDVK S+IPAT K E+ E +P REA+G++MW++T + D++ AVRAVAR P H A+ KI+ + T+D GI Y R G L + VY + + D R SV+G+ + +S + Q + + +++AEY+ E VKE L + V F+ + V EDN+G I L N +S RTKHIDV ++ +R + + + +V + +QHADLLTK L
Sbjct: 1502 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 157 bits (398), Expect = 7.870e-40 Identity = 102/286 (35.66%), Postives = 167/286 (58.39%), Query Frame = 1
Query: 1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVK--KGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
+KDMG AR+ + I + + L I + Y E +++ F + K P V L+KA+E + E+K +M+ P R VG+LM++A T DI+ AV ++RF ENPG H A IK++++ L TKD GI Y G G L Y++ D+ D R SV+G++L+L + + W Q A +++AEY+ LS+ VKE + +++ K + A +VG ++EDN+G + LA N RTKHID+ ++ VR+ + + +V++ YV +++Q AD +TK L ++
Sbjct: 627 IKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGAQL--EAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLSSK 908
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.070e-39 Identity = 98/290 (33.79%), Postives = 166/290 (57.24%), Query Frame = 1
Query: 1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTL------SKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
+KD+G AR+ + I + + L I + Y E +++ F + A W++ L +KA+E + E+K +M+ P R VG+LM++A T DI+ AV ++RF ENPG H A IK++++ L TKD GI Y G G L Y++ ++ D R SV+G++L+L + W Q A +++AEY+ LS+ VKE + +++ K + A +VG + ++EDN+G + LA N RTKHID+ ++ +R+ + +V + YV +++Q AD +TK L ++
Sbjct: 135 IKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQEN-----AKPWLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGLSSK 416
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3HFF3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HFF3_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.270e-39 Identity = 91/285 (31.93%), Postives = 154/285 (54.04%), Query Frame = 1
Query: 1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKI--PATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
MK++G A++ + I + A LKI Y + +VE F + + P + + LSK + E++ MR P R +G L+++ T T DIA V ++RF ENPG H A ++++++ T+ GI Y + + + Y++ D+G LD R SV+GV+++ + + + Q A +++AEY+ LS V+EVL + + M R ++EDN+G I L N RTKH+D+ H+ +R+ E V++ YV +++Q AD+LTK L T+
Sbjct: 1 MKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVERFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYHGGTHTVTLKAYSDADWGTSLDDRRSVSGVMVMTGNAPVVFKSKFQRTGALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQR-NATTIWEDNQGAIALVHNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADILTKALGTK 283
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.480e-39 Identity = 99/286 (34.62%), Postives = 163/286 (56.99%), Query Frame = 1
Query: 1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVK--KGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
+KD+G AR+ + I N + L I + Y E +++ F + K P V L+KA+E + E+K +M+ P R VG+LM++A T D++ AV ++RF ENPG H + IK +++ L TKD GI Y G+ G L Y++ D+ D R SV+G++L+L + W Q A +++AEY+ LS+ VKE + +++ K + A +VG ++EDN+G + LA N RTKHID+ ++ +R+ +V + YV +++Q AD +TK L ++
Sbjct: 329 IKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQLGTHL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATEIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVGNEVELEYVDTKNQLADFMTKGLSSK 610 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18845.5156.1 >prot_H-elongata_contig18845.5156.1 ID=prot_H-elongata_contig18845.5156.1|Name=mRNA_H-elongata_contig18845.5156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATback to top mRNA from alignment at H-elongata_contig18845:2980..3834- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18845.5156.1 ID=mRNA_H-elongata_contig18845.5156.1|Name=mRNA_H-elongata_contig18845.5156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at H-elongata_contig18845:2980..3834- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18845:2980..3834- >mRNA_H-elongata_contig18845.5156.1 ID=mRNA_H-elongata_contig18845.5156.1|Name=mRNA_H-elongata_contig18845.5156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig18845:2980..3834- (Himanthalia elongata Himel1 dioecious)back to top |