mRNA_H-elongata_contig18829.5150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18829.5150.1
Unique NamemRNA_H-elongata_contig18829.5150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18829.5150.1 vs. uniprot
Match: D8LGY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGY6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.240e-22
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 VNTDVNPKKQWQQRYNRCVQKFAGGFVQGDPRYARREECLERFDDFQKCVLDAARKMQEQHDQRKAKGWW 210
            ++  V   K+WQ++Y RCV+KF  G+++G+ R   R++CLERFDDFQKCVLDAARKMQEQ   RK  GWW
Sbjct:   14 ISNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERDDCLERFDDFQKCVLDAARKMQEQRSARK--GWW 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18829.5150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY6_ECTSI1.240e-2258.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18829contigH-elongata_contig18829:5514..6730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquinol-cytochrome C reductase hinge domain
Ec32 orthologEc-14_001440.1
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.805281-CDS-H-elongata_contig18829:5513..56661622930076.805281-CDS-H-elongata_contig18829:5513..5666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 5514..5666 +
1691679271.759488-CDS-H-elongata_contig18829:5513..56661691679271.759488-CDS-H-elongata_contig18829:5513..5666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 5514..5666 +
1622930076.87361-CDS-H-elongata_contig18829:6667..67301622930076.87361-CDS-H-elongata_contig18829:6667..6730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 6668..6730 +
1691679271.7687943-CDS-H-elongata_contig18829:6667..67301691679271.7687943-CDS-H-elongata_contig18829:6667..6730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18829 6668..6730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18829.5150.1prot_H-elongata_contig18829.5150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18829 5514..6730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18829.5150.1

>prot_H-elongata_contig18829.5150.1 ID=prot_H-elongata_contig18829.5150.1|Name=mRNA_H-elongata_contig18829.5150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
VNTDVNPKKQWQQRYNRCVQKFAGGFVQGDPRYARREECLERFDDFQKCV
LDAARKMQEQHDQRKAKGWWR*
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mRNA from alignment at H-elongata_contig18829:5514..6730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18829.5150.1 ID=mRNA_H-elongata_contig18829.5150.1|Name=mRNA_H-elongata_contig18829.5150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-elongata_contig18829:5514..6730+ (Himanthalia elongata Himel1 dioecious)
GTAAATACCGACGTGAATCCAAAAAAACAGTGGCAACAGCGGTACAACAG
GTGTGTTCAGAAATTCGCCGGAGGCTTTGTTCAGGGAGACCCTCGGTACG
CCCGGAGGGAGGAGTGTCTGGAGCGATTCGACGACTTCCAGAAGTGTGTC
TTGGTGAGAAAACGACGACTGGCTGCAGTACGCAGCCCAGCAATAATAAT
TGTGCCCTTACGTGGAGCCTATCGCGTAGACTTTCGCCCAGGTTATGTTA
TATGTTTAATAATATGTTGTTTAAGACGTGAACTTCGTGGTTTCTGAATT
GAAGTAGGTCGAGAACGGCATAGGATACCATGCGGACAGCCACGAGGCGT
CATTTTTTCAGCCAATCACGCCAACGGCGCCCGTTTCTTTGCGGGGTCGC
ATTATAACAATGCACGGCCAGCGCTAGGAGTTCCTGCGCCCGCGAGGAGG
CTCTCGGAAACGGGTTTGGTTTGCCGTGGATGTTCTGCTCCCAGGCGGAG
TCCGCGGCCTGCTCTTTTACGCGGAAATTTATATAAGCTTGCCTTTATCC
AGTGAAACTACTTGCTGCCAGGACTTCGCCAGCCAGCGAGTGTTGTGTTT
GGTCGGCGAGATCACCCAAATTATGTCGTGTCCCTCAAAGACTAGAACCC
ATGGTTAGGATCTTTACTGCGGCTAGTATGGTAATATTTTGAGAAACTCG
CGCGGCATATACCATCGCTGTTGCCACTCTAGAACTATGCGGGCAGCGCG
GTAGCGCGCCTTAAGGGGGTGGACACCGAAACATTCCACGAGGCGACTGA
AATCGACCCAATCCTCAGCGGAAGTCTCCCCCCCTTTTGCGGGGATTTCC
TTGAGAGGAGAGGAAAAAACGTCACGACGTGAACGAATTCGAGAGCTGTT
ACGACGATGTATATATATATATATATATATGTGTGTATATATATATGAAC
TGAGGACCTCGTATCTTCGTTACGCGTTCGTGCGTCCTCTCGCGGGAAGA
AAACACGCGACGTACCGACAGTCGCAACCTGTATACGGTATAAACACGCG
CTTCGCTGCGTACGCGCTCGAGGGTTGGGTGTACGCGATTGGTTTGAGTC
AATATATTGCCTTTTCTCCGCCCCGCATTTTGCTTCTGTCTTGTTTTCGA
CTAGGATGCGGCAAGAAAGATGCAGGAACAGCACGATCAGCGCAAGGCCA
AGGGTTGGTGGCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig18829:5514..6730+

>mRNA_H-elongata_contig18829.5150.1 ID=mRNA_H-elongata_contig18829.5150.1|Name=mRNA_H-elongata_contig18829.5150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig18829:5514..6730+ (Himanthalia elongata Himel1 dioecious)
GTAAATACCGACGTGAATCCAAAAAAACAGTGGCAACAGCGGTACAACAG
GTGTGTTCAGAAATTCGCCGGAGGCTTTGTTCAGGGAGACCCTCGGTACG
CCCGGAGGGAGGAGTGTCTGGAGCGATTCGACGACTTCCAGAAGTGTGTC
TTGGTAAATACCGACGTGAATCCAAAAAAACAGTGGCAACAGCGGTACAA
CAGGTGTGTTCAGAAATTCGCCGGAGGCTTTGTTCAGGGAGACCCTCGGT
ACGCCCGGAGGGAGGAGTGTCTGGAGCGATTCGACGACTTCCAGAAGTGT
GTCTTGGATGCGGCAAGAAAGATGCAGGAACAGCACGATCAGCGCAAGGC
CAAGGGTTGGTGGCGGTGAGATGCGGCAAGAAAGATGCAGGAACAGCACG
ATCAGCGCAAGGCCAAGGGTTGGTGGCGGTGA
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