mRNA_H-elongata_contig18826.5147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18826.5147.1
Unique NamemRNA_H-elongata_contig18826.5147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18826.5147.1 vs. uniprot
Match: D8LLB2_ECTSI (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 6.290e-11
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2 
Query:  200 GFKKRGRDERHAGHYYHPFFQRDHPEILGDVRRSYP 307
            GFKKRGRDE++ GHYYHP+FQRD PEILG VRRSYP
Sbjct:   76 GFKKRGRDEKNPGHYYHPYFQRDRPEILGGVRRSYP 111
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BLAST of mRNA_H-elongata_contig18826.5147.1 vs. uniprot
Match: A0A6H5JRR2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.420e-9
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2 
Query:  200 GFKKRGRDERHAGHYYHPFFQRDHPEILGDVRRSYP 307
            GFKKRGRDE++ GHYYHP+FQRD PEILG VRRSYP
Sbjct:   85 GFKKRGRDEKNPGHYYHPYFQRDRPEILGGVRRSYP 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18826.5147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLB2_ECTSI6.290e-1183.33HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A6H5JRR2_9PHAE5.420e-983.33HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18826contigH-elongata_contig18826:3353..6053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2701
Cds size1461
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18826.5147.1prot_H-elongata_contig18826.5147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18826 3702..5162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.5255547-UTR-H-elongata_contig18826:3352..37011622930076.5255547-UTR-H-elongata_contig18826:3352..3701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18826 3353..3701 +
1691679271.643818-UTR-H-elongata_contig18826:3352..37011691679271.643818-UTR-H-elongata_contig18826:3352..3701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18826 3353..3701 +
1622930076.5801513-UTR-H-elongata_contig18826:5162..60531622930076.5801513-UTR-H-elongata_contig18826:5162..6053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18826 5163..6053 +
1691679271.6659257-UTR-H-elongata_contig18826:5162..60531691679271.6659257-UTR-H-elongata_contig18826:5162..6053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18826 5163..6053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.5442743-CDS-H-elongata_contig18826:3701..51621622930076.5442743-CDS-H-elongata_contig18826:3701..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18826 3702..5162 +
1691679271.6513014-CDS-H-elongata_contig18826:3701..51621691679271.6513014-CDS-H-elongata_contig18826:3701..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18826 3702..5162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18826.5147.1

>prot_H-elongata_contig18826.5147.1 ID=prot_H-elongata_contig18826.5147.1|Name=mRNA_H-elongata_contig18826.5147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=487bp
MPSGNSTPHVRPAFSCAMSSPPRRSRNGSDSRRKAAVCLRPTLENKPSPP
MLPQQRSRRIHNVNNGGVVKDRDRDRDRGAGGGGGDTYVQSYAYRQEKRT
GERAPEAGKNSAKRPWSYSRSPEASEAAISARHDGSETTRNESTTTYRVR
HDGDEGWSGASGTRGGAGTGGGADAGGGSYASNDRSEARNTQSPTHGRMW
GLNRGSEEYRGYIWYNPEEPGISRLAFGESICSPWGDMHAPPGDSNFFDR
NRARAMAMAAGSPRANVETDRRSSYPSSGGGVGRPLSAYPVPRGVRTSAV
FPSRLLRHERFSSYTNPRYPSPPVSAHAAPGSNDLSHRKPSKWRPVYDES
RISAGGDAGDGIDGGGSSWNDQPRFAMGVRMPQGRDDRNKMAEMVLPVTQ
ERSRDDVGAGGEPRSQPAHDSQGPSGSASSSPYRVAFEDPRGGNVSESFR
PNGFRYGMPEVRPASASPAAKGDAVSSHAIAMAATT*
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mRNA from alignment at H-elongata_contig18826:3353..6053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18826.5147.1 ID=mRNA_H-elongata_contig18826.5147.1|Name=mRNA_H-elongata_contig18826.5147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2701bp|location=Sequence derived from alignment at H-elongata_contig18826:3353..6053+ (Himanthalia elongata Himel1 dioecious)
TGTTACGATAGGACAGCAACAACATAACCTCTCGAAGCACACCTCCGCAA
CCCTCCGTAAGAGGGTTGCGAAACGCCTAGTTAGAAGTGGGCGGGAATCA
CCCTACCCTTCTTTCCCGACCCCTGCTTCGATTCTTCGATGTACGCTTTT
ACCAGACTCGGTACGTTTTTCATTTGTTACGCATTAAATCCTTTAAACAG
GGTTCAAGAAAAGGGGAAGGGACGAAAGGCACGCCGGCCACTACTACCAC
CCATTCTTCCAGCGCGATCATCCGGAGATCTTGGGCGACGTCCGCCGGTC
CTACCCGGCCGGCAACGCCAGCTCTAGGTCTGAAGAGGATGAGGTGCATA
TGCCTTCCGGTAACTCGACGCCCCATGTCAGACCGGCATTCTCCTGTGCG
ATGTCCTCGCCGCCCAGGCGATCTCGAAACGGGAGCGACTCGAGGCGTAA
GGCAGCGGTGTGTCTGCGGCCGACTTTGGAGAACAAGCCGTCGCCGCCCA
TGCTGCCCCAGCAACGGTCAAGGCGCATTCACAACGTCAACAACGGTGGC
GTGGTGAAGGATAGGGACAGGGACAGAGACAGGGGCGCTGGTGGGGGTGG
GGGTGACACTTACGTTCAATCTTATGCTTATCGTCAGGAGAAGCGCACGG
GAGAGAGGGCCCCGGAGGCAGGAAAGAATTCTGCCAAGCGACCATGGTCT
TATTCCCGGAGTCCCGAGGCCTCGGAAGCCGCGATCTCTGCTCGCCACGA
TGGCTCGGAAACCACCCGAAACGAAAGCACCACCACATATAGAGTGCGTC
ATGACGGCGACGAAGGATGGAGCGGTGCTAGCGGAACGCGTGGCGGTGCT
GGAACGGGTGGCGGCGCAGACGCCGGTGGGGGATCCTACGCAAGCAACGA
CAGGAGCGAAGCACGCAACACCCAATCTCCAACGCACGGGCGTATGTGGG
GACTGAACAGGGGAAGTGAGGAATACAGGGGTTACATCTGGTATAACCCT
GAAGAACCTGGAATATCGAGGCTGGCTTTTGGTGAAAGCATATGCTCGCC
TTGGGGCGATATGCACGCGCCACCTGGCGACTCGAACTTTTTCGATCGAA
ACCGGGCGAGGGCAATGGCAATGGCTGCGGGGTCACCGAGGGCGAACGTA
GAAACAGACCGACGCTCCAGCTACCCATCGAGCGGCGGCGGGGTCGGGAG
GCCGTTGAGCGCGTACCCGGTCCCCCGCGGGGTTCGTACCTCTGCCGTAT
TTCCTTCTCGCTTACTGCGCCACGAAAGGTTTAGTTCCTACACCAATCCC
CGCTACCCGTCGCCCCCAGTGTCGGCGCACGCAGCTCCCGGTTCGAACGA
TCTGTCCCATCGGAAGCCAAGTAAGTGGAGGCCTGTGTACGACGAAAGCC
GCATAAGCGCCGGCGGCGATGCCGGCGACGGAATCGATGGAGGCGGCTCC
AGCTGGAACGATCAGCCACGGTTTGCGATGGGAGTTCGAATGCCTCAGGG
ACGAGACGACCGCAATAAGATGGCGGAAATGGTTTTGCCCGTGACGCAGG
AGCGTTCAAGGGATGATGTTGGTGCAGGAGGGGAACCTCGCTCACAGCCT
GCCCATGACAGCCAAGGGCCGAGCGGTTCCGCATCGTCGTCGCCCTACAG
GGTTGCATTCGAGGACCCGCGCGGAGGAAATGTCTCTGAGAGCTTCAGGC
CAAACGGCTTCCGCTATGGCATGCCAGAAGTTCGCCCCGCTTCAGCCTCT
CCTGCGGCTAAAGGAGACGCGGTCAGTTCTCATGCGATAGCCATGGCAGC
AACGACGTGATGTGATCGCTAGCCGCTGTCCCGGGTCAAGCATTCTGTTC
CCGCGTTACACTAGAGTTGCACAGGGTCCTGGGTATTTTCGAGCGGAGGA
AAGCGTGGCATGTCGTCGCCTTTGTATGTTGACTGTTTTGTTTAGCTAAT
GCGTTGTTGGGATGAGCGGTCACGTTCGCCGGTCACGACAATGTCGAGCC
TTGCCCCCTGGCCGCGAATGGGAGTGTGTGATCGCGGTACTCCACACAGT
TTGCGTTACTTTCGACCAAGTTTTTTCTTAGTGCATGTTTGGCGTGGAAA
TATGAACGATTGCCTCTGGCGTTCGGGTGCGCATGGGGTTCATTTATATA
TATATATATATATTTATATGTGTTTTTGTGTTAGTTACATGAAAATTATG
TGAAAAGAGTCACTATTTGCCTGTGACGGGTGAGCCCTCTGGTGTCTGGT
GTTCGAGGGGGAGTTTTCCCTTGTGGTGGTTCTTCGTGTCTTGTGGGGGG
TAAACGTGCCTTCTTTCCCCCCTTTTTATTGCGGCCTTTCCCCGTGTCAT
CGGCTTGCTGTGTTGCCCTCTCTCTTCCTAGACTGCGGTTTTGAAAGCGC
GCGAGCTTTGTGTTTGCGTCCCCATATATTGAGTAGGGTGTGGTGTGGTG
TGACTATTTGTCATATTTGTGGGTGGTTGAGGAGACAGCGAACCAGGCTC
AAGCGCCTTTGTTGTAGTAAAGAAACACTTTTACGGGACGTATGACGTGT
TGCCGTGTGTTGTGAGCGAATGGGTACACTCTCGTGCGTGTTATCCTCGC
GATGGTTCCGACGAACCGTACCAAGATAGATGATAGATTGACGAAACACC
GCGAACCATTACATGGTCGAAACTCCCTTATATCCAGCGGTAAGATTTTT
T
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Coding sequence (CDS) from alignment at H-elongata_contig18826:3353..6053+

>mRNA_H-elongata_contig18826.5147.1 ID=mRNA_H-elongata_contig18826.5147.1|Name=mRNA_H-elongata_contig18826.5147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2922bp|location=Sequence derived from alignment at H-elongata_contig18826:3353..6053+ (Himanthalia elongata Himel1 dioecious)
ATGCCTTCCGGTAACTCGACGCCCCATGTCAGACCGGCATTCTCCTGTGC
GATGTCCTCGCCGCCCAGGCGATCTCGAAACGGGAGCGACTCGAGGCGTA
AGGCAGCGGTGTGTCTGCGGCCGACTTTGGAGAACAAGCCGTCGCCGCCC
ATGCTGCCCCAGCAACGGTCAAGGCGCATTCACAACGTCAACAACGGTGG
CGTGGTGAAGGATAGGGACAGGGACAGAGACAGGGGCGCTGGTGGGGGTG
GGGGTGACACTTACGTTCAATCTTATGCTTATCGTCAGGAGAAGCGCACG
GGAGAGAGGGCCCCGGAGGCAGGAAAGAATTCTGCCAAGCGACCATGGTC
TTATTCCCGGAGTCCCGAGGCCTCGGAAGCCGCGATCTCTGCTCGCCACG
ATGGCTCGGAAACCACCCGAAACGAAAGCACCACCACATATAGAGTGCGT
CATGACGGCGACGAAGGATGGAGCGGTGCTAGCGGAACGCGTGGCGGTGC
TGGAACGGGTGGCGGCGCAGACGCCGGTGGGGGATCCTACGCAAGCAACG
ACAGGAGCGAAGCACGCAACACCCAATCTCCAACGCACGGGCGTATGTGG
GGACTGAACAGGGGAAGTGAGGAATACAGGGGTTACATCTGGTATAACCC
TGAAGAACCTGGAATATCGAGGCTGGCTTTTGGTGAAAGCATATGCTCGC
CTTGGGGCGATATGCACGCGCCACCTGGCGACTCGAACTTTTTCGATCGA
AACCGGGCGAGGGCAATGGCAATGGCTGCGGGGTCACCGAGGGCGAACGT
AGAAACAGACCGACGCTCCAGCTACCCATCGAGCGGCGGCGGGGTCGGGA
GGCCGTTGAGCGCGTACCCGGTCCCCCGCGGGGTTCGTACCTCTGCCGTA
TTTCCTTCTCGCTTACTGCGCCACGAAAGGTTTAGTTCCTACACCAATCC
CCGCTACCCGTCGCCCCCAGTGTCGGCGCACGCAGCTCCCGGTTCGAACG
ATCTGTCCCATCGGAAGCCAAGTAAGTGGAGGCCTGTGTACGACGAAAGC
CGCATAAGCGCCGGCGGCGATGCCGGCGACGGAATCGATGGAGGCGGCTC
CAGCTGGAACGATCAGCCACGGTTTGCGATGGGAGTTCGAATGCCTCAGG
GACGAGACGACCGCAATAAGATGGCGGAAATGGTTTTGCCCGTGACGCAG
GAGCGTTCAAGGGATGATGTTGGTGCAGGAGGGGAACCTCGCTCACAGCC
TGCCCATGACAGCCAAGGGCCGAGCGGTTCCGCATCGTCGTCGCCCTACA
GGGTTGCATTCGAGGACCCGCGCGGAGGAAATGTCTCTGAGAGCTTCAGG
CCAAACGGCTTCCGCTATGGCATGCCAGAAGTTCGCCCCGCTTCAGCCTC
TCCTGCGGCTAAAGGAGACGCGGTCAGTTCTCATGCGATAGCCATGGCAG
CAACGACGTGAATGCCTTCCGGTAACTCGACGCCCCATGTCAGACCGGCA
TTCTCCTGTGCGATGTCCTCGCCGCCCAGGCGATCTCGAAACGGGAGCGA
CTCGAGGCGTAAGGCAGCGGTGTGTCTGCGGCCGACTTTGGAGAACAAGC
CGTCGCCGCCCATGCTGCCCCAGCAACGGTCAAGGCGCATTCACAACGTC
AACAACGGTGGCGTGGTGAAGGATAGGGACAGGGACAGAGACAGGGGCGC
TGGTGGGGGTGGGGGTGACACTTACGTTCAATCTTATGCTTATCGTCAGG
AGAAGCGCACGGGAGAGAGGGCCCCGGAGGCAGGAAAGAATTCTGCCAAG
CGACCATGGTCTTATTCCCGGAGTCCCGAGGCCTCGGAAGCCGCGATCTC
TGCTCGCCACGATGGCTCGGAAACCACCCGAAACGAAAGCACCACCACAT
ATAGAGTGCGTCATGACGGCGACGAAGGATGGAGCGGTGCTAGCGGAACG
CGTGGCGGTGCTGGAACGGGTGGCGGCGCAGACGCCGGTGGGGGATCCTA
CGCAAGCAACGACAGGAGCGAAGCACGCAACACCCAATCTCCAACGCACG
GGCGTATGTGGGGACTGAACAGGGGAAGTGAGGAATACAGGGGTTACATC
TGGTATAACCCTGAAGAACCTGGAATATCGAGGCTGGCTTTTGGTGAAAG
CATATGCTCGCCTTGGGGCGATATGCACGCGCCACCTGGCGACTCGAACT
TTTTCGATCGAAACCGGGCGAGGGCAATGGCAATGGCTGCGGGGTCACCG
AGGGCGAACGTAGAAACAGACCGACGCTCCAGCTACCCATCGAGCGGCGG
CGGGGTCGGGAGGCCGTTGAGCGCGTACCCGGTCCCCCGCGGGGTTCGTA
CCTCTGCCGTATTTCCTTCTCGCTTACTGCGCCACGAAAGGTTTAGTTCC
TACACCAATCCCCGCTACCCGTCGCCCCCAGTGTCGGCGCACGCAGCTCC
CGGTTCGAACGATCTGTCCCATCGGAAGCCAAGTAAGTGGAGGCCTGTGT
ACGACGAAAGCCGCATAAGCGCCGGCGGCGATGCCGGCGACGGAATCGAT
GGAGGCGGCTCCAGCTGGAACGATCAGCCACGGTTTGCGATGGGAGTTCG
AATGCCTCAGGGACGAGACGACCGCAATAAGATGGCGGAAATGGTTTTGC
CCGTGACGCAGGAGCGTTCAAGGGATGATGTTGGTGCAGGAGGGGAACCT
CGCTCACAGCCTGCCCATGACAGCCAAGGGCCGAGCGGTTCCGCATCGTC
GTCGCCCTACAGGGTTGCATTCGAGGACCCGCGCGGAGGAAATGTCTCTG
AGAGCTTCAGGCCAAACGGCTTCCGCTATGGCATGCCAGAAGTTCGCCCC
GCTTCAGCCTCTCCTGCGGCTAAAGGAGACGCGGTCAGTTCTCATGCGAT
AGCCATGGCAGCAACGACGTGA
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