mRNA_H-elongata_contig188051.5143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188051.5143.1
Unique NamemRNA_H-elongata_contig188051.5143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188051.5143.1 vs. uniprot
Match: A0A6H5L1W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 9.500e-28
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 RSEIPLTFRLVPSVWLSAESGVLACSDYDTGAPLPTSSPGRTIGAYAHLRVRVEFRPREV 180
            +SEIPLTFRLVPSVWLS E+GVL+CSDYDTGAPLPTSS GRTIGAYAHLRVRV FRPREV
Sbjct:  231 KSEIPLTFRLVPSVWLSDEAGVLSCSDYDTGAPLPTSSSGRTIGAYAHLRVRVTFRPREV 290
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BLAST of mRNA_H-elongata_contig188051.5143.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.550e-27
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:   10 IPLTFRLVPSVWLSAESGVLACSDYDTGAPLPTSSPGRTIGAYAHLRVRVEFRPREV 180
            IPLTFRLVPSVWLSAE+GVL+CSDYDTGAPLPTSS GRTIGAYAHLRVRV FRPREV
Sbjct:  212 IPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVAFRPREV 268
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BLAST of mRNA_H-elongata_contig188051.5143.1 vs. uniprot
Match: A0A6G0WUD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.380e-9
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 RSEIPLTFRLVPSVWLSAESGVLACSDYDTGAPLPTSSPGRTIGAYAHLRVRVEFRPREV 180
            RSEIPL FRLVPSV  + E  +L CSDY+TG  L  S    ++ AY+H+RVRV +RP EV
Sbjct:  318 RSEIPLVFRLVPSV-AAHEKQMLTCSDYNTGYVLGESP--FSVAAYSHMRVRVTYRPVEV 374
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BLAST of mRNA_H-elongata_contig188051.5143.1 vs. uniprot
Match: A0A1W0A6R0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6R0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.710e-9
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 RSEIPLTFRLVPSVWLSAESGVLACSDYDTGAPLPTSSPGRTIGAYAHLRVRVEFRPREV 180
            RSEIPL FR++PS+ L   S +L CSDY++G P+   +P + + AY H+RVRV +RP EV
Sbjct:  279 RSEIPLVFRMIPSI-LDNNSQILTCSDYNSGYPIG-ENPFQ-VAAYGHMRVRVTYRPLEV 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188051.5143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1W0_9PHAE9.500e-2890.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI4.550e-2792.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0WUD1_9STRA6.380e-956.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1W0A6R0_9STRA8.710e-951.67Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188051contigH-elongata_contig188051:805..984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue9.2e-23
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.9635255-CDS-H-elongata_contig188051:804..9841622930075.9635255-CDS-H-elongata_contig188051:804..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188051 805..984 -
1691679271.4382575-CDS-H-elongata_contig188051:804..9841691679271.4382575-CDS-H-elongata_contig188051:804..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188051 805..984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188051.5143.1prot_H-elongata_contig188051.5143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188051 805..984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188051.5143.1

>prot_H-elongata_contig188051.5143.1 ID=prot_H-elongata_contig188051.5143.1|Name=mRNA_H-elongata_contig188051.5143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
RSEIPLTFRLVPSVWLSAESGVLACSDYDTGAPLPTSSPGRTIGAYAHLR
VRVEFRPREV
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mRNA from alignment at H-elongata_contig188051:805..984-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188051.5143.1 ID=mRNA_H-elongata_contig188051.5143.1|Name=mRNA_H-elongata_contig188051.5143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig188051:805..984- (Himanthalia elongata Himel1 dioecious)
AGATCTGAGATCCCGTTGACGTTCCGATTGGTTCCCTCTGTATGGCTCTC
GGCCGAGTCGGGAGTATTAGCTTGCTCAGACTACGACACGGGAGCACCCC
TGCCGACTAGCAGCCCGGGGCGCACCATCGGGGCATACGCTCATCTGCGA
GTGAGAGTGGAATTCCGACCACGAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig188051:805..984-

>mRNA_H-elongata_contig188051.5143.1 ID=mRNA_H-elongata_contig188051.5143.1|Name=mRNA_H-elongata_contig188051.5143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig188051:805..984- (Himanthalia elongata Himel1 dioecious)
AGATCTGAGATCCCGTTGACGTTCCGATTGGTTCCCTCTGTATGGCTCTC
GGCCGAGTCGGGAGTATTAGCTTGCTCAGACTACGACACGGGAGCACCCC
TGCCGACTAGCAGCCCGGGGCGCACCATCGGGGCATACGCTCATCTGCGA
GTGAGAGTGGAATTCCGACCACGAGAGGTGAGATCTGAGATCCCGTTGAC
GTTCCGATTGGTTCCCTCTGTATGGCTCTCGGCCGAGTCGGGAGTATTAG
CTTGCTCAGACTACGACACGGGAGCACCCCTGCCGACTAGCAGCCCGGGG
CGCACCATCGGGGCATACGCTCATCTGCGAGTGAGAGTGGAATTCCGACC
ACGAGAGGTG
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