mRNA_H-elongata_contig188.5138.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188.5138.1
Unique NamemRNA_H-elongata_contig188.5138.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: D7FY21_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY21_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.250e-80
Identity = 135/188 (71.81%), Postives = 156/188 (82.98%), Query Frame = 2 
Query:   38 QKMFQHGNDTLVVAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQKVFS 601
            + M  H ND L+VAAPRA+ +EVERAGPAQL DSKR+WKIEKQEGDLTGQLG+LEQGTRQRNREFEAKLRAI ER RGLE  I +E+ + EETHAV+FAGL++ LK A   +E +AE SIT RFE  L EH+ER+ +  AR+EEFVH TVPRIVDEQ+G VTRKLQKA ETFDIENAKIAKRE+K+ S
Sbjct:    3 RSMLGHKNDALMVAAPRASMAEVERAGPAQLADSKRFWKIEKQEGDLTGQLGDLEQGTRQRNREFEAKLRAIAERIRGLEVGIEREVQEREETHAVMFAGLQEKLKAAAATVEADAETSITDRFEPGLSEHMERIEADNARVEEFVHVTVPRIVDEQSGAVTRKLQKARETFDIENAKIAKRERKLVS 190
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: A0A835ZDQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.930e-46
Identity = 87/178 (48.88%), Postives = 124/178 (69.66%), Query Frame = 2 
Query:   62 DTLVVAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQKV 595
            +T+ +++P A T+ V+R GP+++P S+RY K+++QE DLTGQL +LE+ TR+RNR FEAKL AIE+R R LE  +  E  + E  H  +   L+  L  AV  IE    + IT +F   L E  ER+ + +AR+++F+  T+P +++ Q+G VTRKLQKAHETFDIENAKI KREQK+
Sbjct:    2 ETVTISSPGARTAVVQRVGPSEVPPSERYAKVDRQEDDLTGQLTQLEESTRERNRLFEAKLCAIEQRARHLEEKMSAETLERETAHKAIMTALQSKLATAVANIEEWVNSDITNKFADGLQEQEERVEANKARVDKFIKVTIPGVIEAQSGAVTRKLQKAHETFDIENAKIHKREQKI 179
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: A0A6U4EHM1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EHM1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.520e-21
Identity = 62/178 (34.83%), Postives = 97/178 (54.49%), Query Frame = 2 
Query:   62 DTLVVAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQKV 595
            + L +AAP A  + V +A PA LP+SKR   +++ E DLT +L +LE+GTR RNR+F  +    +ERT+  EA +  E  +  E H  V    +  L   +  IE +      G  +S +          E  +E FV+ T P +++ +   + +K++ A E FDIENAK+ KRE+K+
Sbjct:    6 EILEIAAPGARPASVLQAPPAVLPESKRVPAVDELEEDLTHKLVDLEEGTRARNRDFYEQTDKFKERTQRWEAKLTTETVERNEAHQSVLDSFQVLLHTEMAKIETKIHDMYAGYHDSLIPVQEAHQDRVEEFVEHFVNVTAPEVIEREQKAMEKKIKSAREGFDIENAKVRKREEKI 183
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: W4GS08_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GS08_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.230e-16
Identity = 63/179 (35.20%), Postives = 92/179 (51.40%), Query Frame = 2 
Query:   86 RANTSEVERAGPA---------QLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQKV 595
            R+N +   R GP          Q  DSKR   I   E  L   + +L+  T  RN E +    AI ER+R  E  +  EM   +E+ A + AG+ +  + A  A+E +A A+   R    +     R  + +    EF+H TVP I++   GTVTR+L K+HETFDI+N K+ KRE+K+
Sbjct:   21 RSNATVATRNGPLLRVIRPPNDQETDSKRTELIVNAEELLGHDMEDLKDATHVRNLEIQTHFDAINERSRHFEEKLGAEMKARDESIAELRAGVMRAFEGAFSAMEAKAGAAFDLRLNDTILAQDTRETNVQVHFHEFIHVTVPGIIEALQGTVTRRLDKSHETFDIDNTKLVKREKKM 199
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: A0A024UEM5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEM5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.610e-16
Identity = 59/174 (33.91%), Postives = 91/174 (52.30%), Query Frame = 2 
Query:   74 VAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQKV 595
            +AAP      V R    Q  DSKR   I   E  L+  + EL++ T  RN E +    AI ER+R  E  +  EM   +E+ A + AG     + A  A+  +A  +   R +  +     R  + + +  EF++ T+P I++   GT+TR+L K+HETFDI+N K+ KRE+K+
Sbjct:   24 IAAPNGPLLRVIRPPNGQEIDSKRTDLIVTAEELLSHDMDELKEATHVRNVEIQKHFDAINERSRHFEEKLSAEMKARDESIAALRAGFTDAFESAFAAMAVKASDAFHVRLDETILAQEMREDNVQVQFNEFINVTIPSIIEALQGTITRRLDKSHETFDIDNTKLLKREKKM 197
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: A0A485KLG8_9STRA (Aste57867_8855 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLG8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.120e-15
Identity = 59/174 (33.91%), Postives = 88/174 (50.57%), Query Frame = 2 
Query:   74 VAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQKV 595
            +AAP      V R    +  DSKR   I+  E  L   + EL+  T  RN E +    AI +R    EA +  EM   +E+   + A        A  A+E  A A+ T R +  +     R    + + +EF+  TVP I++   GT+TR+L+K+HETFDI+N K+ KRE+K+
Sbjct:   20 IAAPNGPLLRVIRPPNDEEIDSKRTDLIDAAEELLDHDMDELKDSTHVRNLEIQKHFDAIMDRGHHFEAKLGDEMRARDESIGALRAAFTAAFDNAYAAMEATAGAAFTVRLDETIAAEDAREARVQTQFDEFIQVTVPGIIEALQGTITRRLEKSHETFDIDNTKLLKREKKM 193
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: A0A6G0WKG9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKG9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.870e-15
Identity = 59/174 (33.91%), Postives = 90/174 (51.72%), Query Frame = 2 
Query:   74 VAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQKV 595
            VAAP A    V R    +  +SKR   I   E  L   + EL++ T   N E +    AI ER R  EA +  E  + + +   +   + +    A E +E +A  +   R E  + +   R     A  +EFV+ TVP I++   GT+TR+L+K+HETFDI+N+K+ KRE+K+
Sbjct:   19 VAAPNAPLLRVIRPPDDKETESKRTELIGTAEELLEHDMDELKEATHVHNLEIQKHFDAIMERARHFEAKLHDEEVERDASIGALRLHVTQAFDSAYECMETKAIEAFHVRLEDTIPKQETRASDFSAAFDEFVNVTVPGIIEALQGTITRRLEKSHETFDIDNSKLLKREKKM 192
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: G5A1P0_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G5A1P0_PHYSP)

HSP 1 Score: 84.3 bits (207), Expect = 5.630e-15
Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 2 
Query:   74 VAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQK 592
            +A P    S V R      P+SKR  +IE  E DL   + EL+      N +F+A++ A+++R RGLEA +  E  D   +   +     K  + A   +E +  +         +    ++L   E+      + TVP I+++  GT+TRKL+K HETFDIENAKI KRE+K
Sbjct:   45 IAPPGGPPSRVIRPPNDFPPESKRADQIEDAEEDLEVDMEELKAAVHAYNVDFQARIDAVKQRGRGLEAKLGSEHEDMMSSIESLRVDFRKQFQTAFLTLEQKTLSHFAKLEAQEITCQEKKLHECESEFRTLAYTTVPEIMEKLQGTITRKLEKNHETFDIENAKIQKREKK 217
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: A0A3F2RMP7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMP7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.820e-15
Identity = 59/173 (34.10%), Postives = 87/173 (50.29%), Query Frame = 2 
Query:   74 VAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQK 592
            +A P   +S   R      P+SKR   IE  E DL   + EL+      N EF+ ++  +++R R LEA +  E  D   +   +  G  K  + A   +E +  +         +    ++L   EA    F + TVP I+++  GT+TRKL+K HETFDIENAKI KRE+K
Sbjct:   45 IAPPNGPSSRAIRPPNDFPPESKRAELIEDAEEDLEVDMEELKAAVHAYNVEFQQRIDTVKQRGRELEAKLGTEHEDMMASIEQLRIGFRKQFQAAFLTLEQKTLSHFARLETQEITTQEKKLHECEAEFRTFAYTTVPEIMEKLQGTITRKLEKNHETFDIENAKIQKREKK 217
[Close]
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Match: K3W544_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W544_GLOUD)

HSP 1 Score: 83.2 bits (204), Expect = 9.390e-15
Identity = 61/157 (38.85%), Postives = 89/157 (56.69%), Query Frame = 2 
Query:  131 PDSKRYWKIEKQEGDLTGQLGELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLEKTLKEAVEAIEGEAEASITGRFESRLHEHV---ERLGSGEARLEEFVHATVPRIVDEQNGTVTRKLQKAHETFDIENAKIAKREQK 592
            P+SKR   IE  E DL   + EL+      N +F+ ++ A++ER R LE  I QE  D E +   + A   K  + A  ++E +   S   R E+  HE V    ++   +A  ++F + TVP I+++  GT+TR+L K HETFDIENAKI KRE+K
Sbjct:   33 PESKRAQTIEDAEVDLEEDMDELKAAVHAYNVDFQRRIDAVKERGRILEEQINQERQDMELSSQQLQADFRKHFQSAFLSMEQKT-LSHFARLEA--HEVVTEERKVRECDADFKKFAYTTVPEIMEKLQGTITRRLDKNHETFDIENAKIQKREKK 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188.5138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY21_ECTSI1.250e-8071.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDQ8_9STRA2.930e-4648.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4EHM1_9STRA7.520e-2134.83Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
W4GS08_9STRA1.230e-1635.20Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A024UEM5_9STRA3.610e-1633.91Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KLG8_9STRA1.120e-1533.91Aste57867_8855 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WKG9_9STRA2.870e-1533.91Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
G5A1P0_PHYSP5.630e-1534.10Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A3F2RMP7_9STRA5.820e-1534.10Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
K3W544_GLOUD9.390e-1538.85Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188contigH-elongata_contig188:12821..21992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue1.4e-65
Seed eggNOG ortholog2880.D7FY21
EggNOG OGs2B3PV@1,2S0FE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004750.1
Exons4
Model size930
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188.5138.1prot_H-elongata_contig188.5138.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188 12864..21741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.2668588-UTR-H-elongata_contig188:12820..128631622930075.2668588-UTR-H-elongata_contig188:12820..12863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188 12821..12863 +
1691679271.190308-UTR-H-elongata_contig188:12820..128631691679271.190308-UTR-H-elongata_contig188:12820..12863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188 12821..12863 +
1622930075.4708962-UTR-H-elongata_contig188:21741..219921622930075.4708962-UTR-H-elongata_contig188:21741..21992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188 21742..21992 +
1691679271.2350113-UTR-H-elongata_contig188:21741..219921691679271.2350113-UTR-H-elongata_contig188:21741..21992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188 21742..21992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.2833076-CDS-H-elongata_contig188:12863..129261622930075.2833076-CDS-H-elongata_contig188:12863..12926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 12864..12926 +
1691679271.2017581-CDS-H-elongata_contig188:12863..129261691679271.2017581-CDS-H-elongata_contig188:12863..12926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 12864..12926 +
1622930075.2974267-CDS-H-elongata_contig188:18408..185721622930075.2974267-CDS-H-elongata_contig188:18408..18572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 18409..18572 +
1691679271.2127454-CDS-H-elongata_contig188:18408..185721691679271.2127454-CDS-H-elongata_contig188:18408..18572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 18409..18572 +
1622930075.3088057-CDS-H-elongata_contig188:20505..206651622930075.3088057-CDS-H-elongata_contig188:20505..20665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 20506..20665 +
1691679271.220262-CDS-H-elongata_contig188:20505..206651691679271.220262-CDS-H-elongata_contig188:20505..20665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 20506..20665 +
1622930075.4527876-CDS-H-elongata_contig188:21492..217411622930075.4527876-CDS-H-elongata_contig188:21492..21741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 21493..21741 +
1691679271.2275548-CDS-H-elongata_contig188:21492..217411691679271.2275548-CDS-H-elongata_contig188:21492..21741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188 21493..21741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188.5138.1

>prot_H-elongata_contig188.5138.1 ID=prot_H-elongata_contig188.5138.1|Name=mRNA_H-elongata_contig188.5138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MFQHGNDTLVVAAPRANTSEVERAGPAQLPDSKRYWKIEKQEGDLTGQLG
ELEQGTRQRNREFEAKLRAIEERTRGLEAAILQEMTDCEETHAVVFAGLE
KTLKEAVEAIEGEAEASITGRFESRLHEHVERLGSGEARLEEFVHATVPR
IVDEQNGTVTRKLQKAHETFDIENAKIAKREQKVFSIYFFLIYLYLYIYI
YISLEKTSRRM*
back to top

mRNA from alignment at H-elongata_contig188:12821..21992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188.5138.1 ID=mRNA_H-elongata_contig188.5138.1|Name=mRNA_H-elongata_contig188.5138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9172bp|location=Sequence derived from alignment at H-elongata_contig188:12821..21992+ (Himanthalia elongata Himel1 dioecious)
ATTGTCGGCAAGCATATGAGAGAGGGGCGTAAGGCTCCAGAAAATGTTTC
AACATGGAAATGACACTCTGGTGGTTGCTGCTCCCAGGGCAAACACGTCA
GAGGTGGTGAGTTGAGTGGAAGCGCCAAAAACTCTAAATTATAGGGAGAA
AACGTCGTATTCTTCGACGAGAAAATGCGGACTAATTACTAATTAGAGTT
TTTCCCTTCAATTCTCAAGAGAGGAGGTTAGGCTGGCCGTTGACAATGCC
TTCTCAGCGAGGACGGCATGGCGCACTTGTATCTGGCCTGTTTATCACCC
CATGCATATTTTTCATTGAGAAGATCGAGCCTGGAAGCTGCTGGAATGTT
TTGGTATTTTATTGTGCATTGAGGGAAAACATAGCATGGGTTGGTGTTGG
GGCTTTAAACTACACGAAGCAACGTCCTTCGTTCAGGATATAAAAGCGTA
GCCTCGGAGGATAACACCTTCCATGTACGTTCAGTCAGCAAACACGGGTT
CAGTACGAGTACTCCCGTCCATACAGTCAACCACATAATTTCATTATTAT
GAAGTCCACTTTAATCGATTTGGTTCCAGAATGTCCCAAGCTGCGAAGGA
CGACGCCCGAAAGTATCCATGTCCCAACATCGCATCATGTTATAGCCCTT
CGTGTATCCACCGGCTAACTCGCTTGTTAACACCGCGCACATTGATCTCC
GGTTGTAAGTCTTCGTATTGAATTAACTCCATCATCTACTGCTGTCTTAT
TTGCTGCCAGAAGTAGTAGAATATGAAGTAAGTTGTACTCGTACAGTAGA
CAATTTTTTTCCCCCGAGGCTTTTAACGGGAACACGGGACGCGACGGGAT
GTTGTTGTTGTTGTTGGTCTCACTTTTAGCAGAAGGATCAACCGGATTTG
GTTGCCTTCTGCTCATGGTCAGGAAAATTATTTTACCCTGTCCCCGTTCG
CGCCTGAGAATTTGATCTCGCGAGGCGGATTCAGTACTCCCGTCTCGCGT
CAGCCCGTTCTCTCAAACCCAGGCTGAACCTCGTACTTACTCCCGGGATC
CTCTCGATCCTCCCGTTTTCCGCAACGGCATCCAAATCCCGTCGCTCGTC
AAGGCAGCGGGATGGGGGGGGAATATATCCCACTGGAGATAATGACAACG
GGACATTAATAGGAATTGAAGAAAGTGACATTAATGGGACGGAAAATGAA
GGTCCATTTTCAGACAGGGCGAGGCGTAAGAGTTGACGAGCCACGCACGA
CCAAGTCGTAAAGTATTTCTCAAGATTATGTTTAGCAGAAGTCTCTCCTT
AATAACGTCATGCTAAATTTATATTTAAAAACCTTGAACTCATTCCAGCC
CTCCGAACATCCACACCTTCTTAGCGCCGTGAGAGGTGCAGTCCAGGGGA
CCAACTATCGTCAGGTTCGAATGTGTACATTACTACCTTTGAGCGCAAAA
TTGTCACACGTGATAGATCGTGTTCTCCAATAGTAATGGCGTCATCGGGT
CAACGGAATAATCCATTATTATCCCATACACTTTACATTATTATTATTCG
TCATGTGGGGACTATGACGCCAAACCAAAGCTATAGCTTCGATAGTGGAC
TGTATAAGAAGAGGGGGTGCGGGAGAGAGAGAGAGAGTGTGGGGAGTTTG
GGGAAGTAACTGTATGAGCTGTGGGATGCTTTGATAAGTCTGCATAGACG
GCATGGAGATATTTAGTTAGTAGAGGGTATAGGCAGGTTCGGCAAATGGT
GGCATTGTACATAATATATTATTCCTTTCTGGAAACGTATAGCCAAACCT
AGAGGTGATTTTACATTAATTAATATAGAGTAAACTGTTAAATTGTAAAA
TAAGGGGGAGTTTGGGAGAGAGAGGAAGTCAGTGACACTATGAGCTGTTG
GGTATATTGATCAGTGCACACATAGAGACTAGGAAGATATTTAGTTTGTG
AAGTTTTTAGAGGGTATAGGTAAGTTCAGCACATGGCTGCATTGTATATC
TCGATTAATTTTGGGCTGTAGCTATTAGAAAAGCGTCATTGCCTGACCTA
GCCGTGATTTACAATATCGACGTTTTTAGATTATAAACTAGAGGGAAGAA
AGCAAAAAACAAACAAACACACACACACACATCTATCCATAGAGAGGCCG
TTAGAGGATCATCGACCACAATCAACCAGTACGCCTCCCGAGATTGAAAG
CGTGAGATGCACATTTTATGTCTTGGAAGTCCAGCACTATGAATCGCAAG
GGCAGTCCTCGTGGGGTTGCACCAGGCGCTTAGCATTTTTATTTAAAATA
CCTTGAACTCATTCCAACCCTCCGAACATCCACACCTTCTTAGCGCCGTG
AGAGGTGCAGTCCAGGAGACCAACTATCGTCAGGTTCGAATGTGTACATT
ACTACCTTTAAGCACAAAATCGTCACACGTCACAAGTCGTGTTCCCCATT
ATATAGTAAGTTAATCGGGTCAACGGAATAATGTCAAGGATCCCATTGTT
ATCCCGTACACTTTACATCATTCGCCCACGAACTCGAGCACAACAGCGTG
CGATACACCTCCTACCCCCCCCCCATAGGAGGATCTTCATGCGTGTACGC
CCGTAAAGGATCGACCCCGGTGCTGCATGGTCCCCCATCCCCTCCCCGCC
TTCTTTGATAATCCGTAATTTCCACTATCGTGCCAACATGTGCCCCCAGC
ACACACCCTCTTTGTCCCTCTGGAAAAGTTACTTGTTACTCGATCTGTAA
GGGGAGCTTTGCCTCGTTACGTCCCCGAAACTACGGAATGTGGTTGACGC
TCAGCTGGAGGAGTATACTGTTTTCTACCTTGCCCCCATCAACCGCACGG
TGGAAGTTATTCAAAGTGAATGAGAGGACTGAGGCGTCCCGCTCCGATAC
GCAGCTTGTCCTACTGATAGAAAAGTGCTCGCCATCATGGCGAGCACGGG
GAATCAAGCGCATTCTGCCGTGTTCCTGCTGCCATCTAGCCTCGGGGTGC
TGGCTCCCTTACATCAGCGAAGGAGGTCGAAATATCTTCTGACGATAAGT
TCTAGTTTCTTGCAGCCATCAAATTCGTCGAGACGGCCTCGGAAGGGAAC
CCCGGTTGAAATACCTCCTCCTTGGGCAGCTGTGCCCTCCCTAACTTTAC
CCTCGCGAGAGAGACTGCTCTCCGGTCTCAACTTGGCCGTGGCTAAGCCG
CCCATTTGTCTCGTCCGCCGCATTGCGCCTCCCCCGGTGTTGCAAGAGCT
GAGCTTCCCGTTTTCTTGTCACGGGTACCAAGCTCTCCACGTTCACCATA
GGCGAATCGAATATTTCTTCCTCTCGTGCAGGCTCCAAACAGCCACTGCC
CGCCGCAGCGAGGCGTCGGTTTGTTGCCCAATTACTGTTTTATTTTTTAA
TATTCTCCCGATAAACTGGGGCGTGGGTGAAGCTTCAGCCTCAGGACAAG
ACGGTGAAAATTCCCTGTCACAATTGTTGTTATCTTGTTCTGAAAGAGGC
TCTCCCACCCTGGCCTTGTCTTCCGTTGACCTCAAGCTGATTTTCCGTAA
AGTCTCCGTGATACGGTGGTGCCTGTAGAAACCTAGCCATCGACCAGATC
CCGATAGCTTGTTTGAAAAATGAATGAAGCCACCGGAAGACGCTCGTCCA
ACCTCGATTGCAAATTTTATCTGCGCTGACGGCTTTATTCACGGAAAAAA
ACATCACTATTTTGCACATAATTTGGATCAGACCGTACATTTCCCGCCCC
ATCGATCCCGCAAGTTTTCCCGTACAAGTCTACGGGAATGAACGGGAAGC
TAACGATACTGTAATGACGGGATCGCCGAAATCATTTTCGTATCTAGCGG
GAATGTCTTCATCTTTAACTGGACGAGACAAGGCAGGAACTGATCTCTCT
CCTCAACGATATGAGGAACGAGACGGGAGGGGGAAGTAAATAACCTAGCA
GAAGGGACGGGACGGGAACGCGTCATATAAATTCCAACGGGACGGAACAA
AAATATAATTCCGTCCCGTTCCGTTGTCCCGTAACATCTTGTTTCTGGTA
AAAGCTCTGTTTTTTTTAAAATATCTGCCCTTGTGTCCCCTCATGGCGAT
TGGTGGAGTAACGGCGGGTTTCTCCTCGACACTATGGTGCATTATTTTAG
CGCATTATGGTGCATTATTTTGGCAGATGATTATGGCGCATCATTATGGC
GGTGGGGCTGCTGTTGGCCTAAGAGTGTCTACCGCACGGTGATTGGGGGG
ATAACCCAACTCACTTCTGGAGGTTGTGGACACATTGTGCGCCGCCAGTC
ACTTGCTATAGCAGGAGTATATATCCACTCCAAGCTGACGTCACGCGAGA
GGTCGATTGGTGAAAATAAGGCGTGTTGGTGTGGGTGTTCGTAGGGTACT
AGAGCGTTTTTGAAAGTTCTCACGTCGCACGAGTACGTGATTTGTTAATT
TTGTTTTGTACTACAATATGTTATAGTTGGTTGGTAACCACGGGAGCTAA
GTTTGTCAGTTTGATCCAAGTTGGGATGGGTGTTTTGATAGTTTCATAAG
CGGAAAGCGCGAAAACGCAGGTAAACGAAGTTCGAACAATTGTATAGTTG
ACGAAGTGTGTGACTCTGGGACTGCTGAACTTGCATCGTGATAAGAAAAA
AAAACAAAAAAACAGGGGAAGGCGTGATCCAACTGGGGAGATATGGATTA
ATCCCTTATAAGGTCACAGGCTATGACAGGATGGGGTGTAACGTTACGGG
TGATGGGATTGGTACGCTGTTAAGAGCATGTTGGACGACTTTGTTGACAG
AAAGTGAGGATACTGATACAGCCCAGGAAGATGGGGAATGGCGCAAGACG
GCGGAACAAGGGGCGGAACATTTCGTCGCGAAATGGATCGCTGCAGGGAA
AATCAGTACACGGGTTACAACATGCAGTAGTATGTCTGAACGTGAATTGG
AGGACCAAGGAGATAATTAGCCCAAAGCAAGCGAGCTCGTGCTGGTTTGC
TCGCCACAGTTGATTAGCTACGAGTGGCACGAACTTATCCTCCGGGCGTT
TGTGTTTGCCGATGTCATATTACCTTTCTCTGGCGTTATGTTTTTGTTCT
TCGTCTTGTTTTGTTTCGTTTTCTTGGGTTGTTTTTGCTTTTGTTTTATT
GAAACCGCAGCTCTTCGTTTAATCGTTCTCCGATAGTCCCGTGTCTCGAC
AGCCACACGCAGTTCGTTAACAAATGTGAGTACTGTTTTTTTAGTGTTTT
TTGTTTTTTTGTTTTTTTGTTTCTTTTCTTTGGAGATGCCGCCTTTTCCG
AGTATTATACACCATTGCCGTTTCCTTTTGTATAGAGTACAGTACGATAA
CGTTTTCCTTCCGGATGGATTTTTTCTACCTTGTGACCACAGGCTGGATT
TTGACATCAGTTAAAATATCATCAATTCCCAACTCGATCAATCAGTAGGT
GGGATCTTTCAGACTCCAGAAGATACATCCATAGAAAGCTTGGGTTTGAA
CGAGTTCATACCGGTATGTTTAAAAAATAATAATGATACCATCTCGCCTT
GCTCGTACCTACGAAAACCTACCTGCCTAAAAAAAAAGGAAAGAGCTGGA
CCTGCCCAGCTGCCGGACTCGAAGCGTTACTGGAAGATCGAGAAGCAGGA
GGGGGATCTCACGGGCCAGCTGGGGGAGCTGGAGCAGGGTACGAGACAGC
GGAACCGCGAGTTTGAGGCGAAGCTCCGAGCGATCGAAGAGAGAACGAGG
GGGTGAGTAACTTGCTTTGTTGCACATTTTTATTATATAATGTAGTCGAT
ATACATACACGTAATGTACACATTCGAACCTGACGATAGTTGGTACCCTG
GACTGCACCCTGCACCTCACACTGCCCTAAGAAGGTGTGGATGTTCGGAG
GGTTGGAATGAGTTCAAGATTAAAAAAAATATATATATACACATATATAT
ATGTGGGTGTGTGGGTGTTGTTTCAAAAAATTAATAAATAAGTGGTGTCT
GATGTGTACGGTACAACGCACCTGGGTGCAAGGAAATTATGAAAGAAGAA
AAAATATCTGCCGATAGGGGGGCAATAGTATTCAACGCTCTAGACATGGC
ATGATTTTTGTTTCTGTTGTGGTAACCATGTACGTGACCCGTCTGCTAAT
CGGGCCACTTTATTTTCAATTTGTGACCATCACGTATAATATAGTATATA
TAGTATATAGCATATAGTGTATAGCATATAGTGTATAGCATGTAGTGTAG
TATAGTATATAGCATATCGTATATAGCATATAGTGTATAGCATATAGTGT
AGTATAGTATATAGCATATAGTGTATAGCATATAGTATATAGTGTAGTAT
AGTATATAGCATATAGTATATAGCATATAGTGTATAGCATGTAGTGTAGT
ATAGTATATAGCATATAGTGTATAGCATGTAGTGTAGTATAGTATATAGC
ATATAGTGTATAGCATGTAGTGTATATAGCATATAGTATATAGCATATAG
TGTATAGTATATAGTGTAGTATAGTATATAGCATATAGTATATAGCATAT
AGTGTATAGCATATAGTATATAGTATATAGTGTAGCATATTATATAGCTT
TTATTATATAGGCTATAGCATGGATCAACCGGATATGGTTGCTAATCCTG
CTTGTGATCAGCTGAACAGGGAAAAATTCATTTTCCCTGTCCTCGTTCGA
GCCTGAAATTTGGTTTCGCGAGACGGGTTCAGCAGTTCCGTCCCGCGTCA
GTCTGCTCGTTCTATCAACCCAGGCTGAATCTGGTGTGTACTCCCAAGGT
CCTCTCGATCCTCTCGCTTTCCACGATGACGTCCATCTCTACCGTCAACC
GCCATTTGGCCAATCCCGATTTTATCAGGTCATGCAATTGTGTACCGATG
GTGTTTACCACCCAAGAGTTCGCCGGCACTGAGCCAGTAGTCCTCAAGGT
AGCTTGAGTAACGGGTGCAGCCTATTCAGATAACCCTATGGATCAAATAT
TGTGCGACTCTCTTTTTTCACACCCACTAATGGTACGGTGGACATCTGCG
ATACAGTATAGAGAATAGCACATATAGTATCAGAAGCGGATACAACCCAA
CGAATAGGTCTCGCTACAAACTATTCCAAATTTGACACGAGGTTGACGTC
ATAGGGATGATATTAAAATATATATTAAAAAAAACGTCATAGGGAGAGGG
ATGGGGGAGAAATGGGTATTCGCGCTGTACAATGGTACAATACATAGTAT
AATACCTGGTACACATTATGGTGGAATAAAAAGCGCAACGCACCGCAGCG
GCGCACGGGATTCTCCGGGCGGCCCTGAGCCGAGTCGAGAGCATCGTCTG
CCCCGGGGGAAAACGATGCTCCGTTTTCCAATATCCGTTTCCCGATATAT
GTTGCTGGAAAGACATCTCTCTGTTTCGGAAGGTTTTCCCGCGACGGACG
CTCGTTTACCCCATCTCTTGCTTCCTCTCTTTCTCTCTCTCTCTTATTTA
CCCTTGGAGTACCATACCATTGGGTGGGATTTCCTTTTGGGGCAAAGAGG
ATGTGGACCTCTAATGGTGCAGTTTGCCACACTAAGTTCCCGCTTCGGCC
TATTTCCTCCCCCCCCCCATTCTCCACCCCTCCGTCTCTGCCCCACCCCT
GCCCCCTTTTCTGCCTCTAACTCTCTATTTTTCAGGCTGGAGGCGGCCAT
TCTCCAGGAAATGACGGACTGCGAGGAGACCCATGCAGTCGTGTTCGCCG
GCTTAGAGAAAACGCTCAAGGAGGCGGTCGAGGCCATCGAAGGCGAGGCG
GAAGCTTCCATTACCGGCCGTTTCGAATCGAGGCTACATGAGCACGTTAG
TCACGCGGAGACGGCGCGCGAACCCGCGGGAACGCGGCAGCAGGGACTGG
GGGGGGGCGGGGTGGGAGGGGGAAGAGTGGTTTTGTTTTTTTGTAGCGTC
GATAGACTAACGACTAATCATTCCTTAGGCTAATCATTATTTAAACTGCC
CATTCCTTAGACTAATGATTCCTTAGACTAGTAGTTCCTTAGACAAACAC
TTCGACTTGTCATTCCTTAGACTAACCATTCCTTTTTATTTTTTTATTTT
TATTCGTTCAAAATTCGGCCAAACCGTGCGCTTGTGCCAACGTGAACCCC
CCCCCTCCCCCCCCCCCCCTTTCTTCTCTTTTCGCTCGTCTCTCTCCCCC
CTCCCCCCTTCTCTCTTCTTTTTTTNNNNNNNNNNCGGCCAAACCGTGCG
CTTGTGCCAACGTGAATCCCCCCCCCTCCCCTACCCCCCGTTGGATGGCT
TTACGCGAGTCCCTTCTCCCATTCCTACTTTTTCTCTTCTTTTTTTACTA
GTATAATACTAGGTAATGTATTATTAGGCCGGGCATTCGGAGAAAGGGAA
TAATGTTCTCCTAGTTACGCTTGTTGAGGAAAAATCAACTAAATAGATAG
GACAGCGTTACAGTTCGTGCGATTGGTAGGCGATTTTTTTTATTATACAT
CTATAGATTGACATACAGACAGACAGAAAGAAAGAGGCATCTGTGTTTGT
GTTTGGTGAGTAGGTTGCCCCAATGCAGCCGCAGCATTGGCAGCACGTTT
GTCGTCCTCTTCATGTATTTCTACACGCTTTGTCCTTTTGCACGCTGTGT
CCCCGGGCCGCGGCTGCGACAGGTTGAGCGGTTGGGGTCGGGGGAGGCGA
GGCTGGAGGAGTTTGTGCATGCGACGGTGCCGCGCATCGTGGACGAACAG
AATGGGACTGTGACCCGCAAGCTACAGAAGGCGCACGAGACCTTCGACAT
CGAGAACGCCAAGATTGCCAAGAGGGAACAAAAGGTGTTCTCCATATATT
TCTTTCTTATATATCTATATCTATATATCTATATATATATCTCTCTCGAG
AAGACATCGCGGAGAATGTGACGCCCCCAAAAGTGTAGTTATACTATTTC
CGGAAGGATGCCGAGTTTCCCCACCGTTTCCATAATATATAGAGCTACAA
TATAGAGCTACCGGTAAAGCATGTACCACCGCCGACGACTCCGATGATGG
CATGGAGCGTGAGCTATGGGGAGAAGCTTGGGCGTGCCTTCCTTCACACC
CAGTCGGGGATAAGCTCAGAGTATTCCACGGGAAGGGGTGTTGGGGGAGA
GGGATGTGTGTGTATATGGCGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig188:12821..21992+

>mRNA_H-elongata_contig188.5138.1 ID=mRNA_H-elongata_contig188.5138.1|Name=mRNA_H-elongata_contig188.5138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig188:12821..21992+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCAACATGGAAATGACACTCTGGTGGTTGCTGCTCCCAGGGCAAA
CACGTCAGAGGTGATGTTTCAACATGGAAATGACACTCTGGTGGTTGCTG
CTCCCAGGGCAAACACGTCAGAGGTGGAAAGAGCTGGACCTGCCCAGCTG
CCGGACTCGAAGCGTTACTGGAAGATCGAGAAGCAGGAGGGGGATCTCAC
GGGCCAGCTGGGGGAGCTGGAGCAGGGTACGAGACAGCGGAACCGCGAGT
TTGAGGCGAAGCTCCGAGCGATCGAAGAGAGAACGAGGGGGAAAGAGCTG
GACCTGCCCAGCTGCCGGACTCGAAGCGTTACTGGAAGATCGAGAAGCAG
GAGGGGGATCTCACGGGCCAGCTGGGGGAGCTGGAGCAGGGTACGAGACA
GCGGAACCGCGAGTTTGAGGCGAAGCTCCGAGCGATCGAAGAGAGAACGA
GGGGGCTGGAGGCGGCCATTCTCCAGGAAATGACGGACTGCGAGGAGACC
CATGCAGTCGTGTTCGCCGGCTTAGAGAAAACGCTCAAGGAGGCGGTCGA
GGCCATCGAAGGCGAGGCGGAAGCTTCCATTACCGGCCGTTTCGAATCGA
GGCTACATGAGCACGCTGGAGGCGGCCATTCTCCAGGAAATGACGGACTG
CGAGGAGACCCATGCAGTCGTGTTCGCCGGCTTAGAGAAAACGCTCAAGG
AGGCGGTCGAGGCCATCGAAGGCGAGGCGGAAGCTTCCATTACCGGCCGT
TTCGAATCGAGGCTACATGAGCACGTTGAGCGGTTGGGGTCGGGGGAGGC
GAGGCTGGAGGAGTTTGTGCATGCGACGGTGCCGCGCATCGTGGACGAAC
AGAATGGGACTGTGACCCGCAAGCTACAGAAGGCGCACGAGACCTTCGAC
ATCGAGAACGCCAAGATTGCCAAGAGGGAACAAAAGGTGTTCTCCATATA
TTTCTTTCTTATATATCTATATCTATATATCTATATATATATCTCTCTCG
AGAAGACATCGCGGAGAATGTGAGTTGAGCGGTTGGGGTCGGGGGAGGCG
AGGCTGGAGGAGTTTGTGCATGCGACGGTGCCGCGCATCGTGGACGAACA
GAATGGGACTGTGACCCGCAAGCTACAGAAGGCGCACGAGACCTTCGACA
TCGAGAACGCCAAGATTGCCAAGAGGGAACAAAAGGTGTTCTCCATATAT
TTCTTTCTTATATATCTATATCTATATATCTATATATATATCTCTCTCGA
GAAGACATCGCGGAGAATGTGA
back to top