mRNA_H-elongata_contig18795.5136.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18795.5136.1
Unique NamemRNA_H-elongata_contig18795.5136.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 5.950e-25
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:    2 SNFSLLHRVNKHIHIWTGHFAFLAGAFQCYRGVELVSATDSLVFSAVEDLVEFEFGNFGVVYDYVMPIWFGVVAVVFFFLETRKQLK 262
            +NF L HR NK  HI+ G FA+LAG  QCYRG+ELV++ D L+FSA + L + + G+FG VYDY  P WFG++A++F +LETRKQ +
Sbjct:  331 ANFCLFHRCNKFFHIYAGRFAYLAGVVQCYRGLELVASDDQLIFSAGDGL-DLQLGSFGFVYDYGFPAWFGLIALIFLYLETRKQYR 416
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BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 7.210e-24
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 2 
Query:    2 SNFSLLHRVNKHIHIWTGHFAFLAGAFQCYRGVELVSATDSLVFSAVEDLVEFEFGNFGVVYDYVMPIWFGVVAVVFFFLETRKQ 256
            SNFSLLHR NKH HIW G FA+ AG  QCYRG+ELVS+ D L+FSA + L + + G+FG V DY+ P WF +VA  F  LE +KQ
Sbjct:  757 SNFSLLHRFNKHFHIWAGRFAYAAGVVQCYRGLELVSSDDELIFSAGDGL-DLQLGSFGWVKDYLFPAWFALVAGGFLVLEAQKQ 840
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BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.350e-23
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:    2 SNFSLLHRVNKHIHIWTGHFAFLAGAFQCYRGVELVSATDSLVFSAVEDLVEFEFGNFGVVYDYVMPIWFGVVAVVFFFLETRKQLK 262
            +NFS+ HR NK  HI+ G FA+LAG  QCYRG+ELV++ D L+FSA + L + + G+FG VY+ V P W G++A++F +LETRKQ +
Sbjct:  848 ANFSVFHRFNKFFHIYAGRFAYLAGVVQCYRGLELVASDDKLIFSAGDGL-DLQLGSFGFVYEKVFPAWLGLIALIFLYLETRKQYR 933
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BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 7.670e-22
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 2 
Query:    2 SNFSLLHRVNKHIHIWTGHFAFLAGAFQCYRGVELVSATDSLVFSAVEDLVEFEFGNFGVVYDYVMPIWFGVVAVVFFFLETRKQ 256
            SNFSL HR NK  HIW G FA+ AG  QCYRG+ELVS+ D L+FSA + L + + G+FG V D + P WF ++A  F  LET+KQ
Sbjct:  756 SNFSLFHRFNKFFHIWAGRFAYAAGVVQCYRGLELVSSDDELIFSAGDGL-DLQLGSFGWVKDILFPAWFALIAGSFLILETQKQ 839
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BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 5.330e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:    2 SNFSLLHRVNKHIHIWTGHFAFLAGAFQCYRGVELVSATDSLVFSAVEDL 151
            SNFSLLHR NKH HIW G FA+ AG  QCYRG+ELVS+ D L+FSA + L
Sbjct:  741 SNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELIFSAGDGL 790
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BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.360e-13
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:    2 SNFSLLHRVNKHIHIWTGHFAFLAGAFQCYRGVELVSATDSLVFSAVEDLVEFEFGNFGV 181
            +NFSL HRVNKH HIW G FA+ AG  QCYRG+E VS +D L+FSAV+  + F F   GV
Sbjct:   78 NNFSLFHRVNKHFHIWAGWFAYAAGLVQCYRGLEQVSGSDKLIFSAVD--ISFTFFTKGV 135
[Close]
BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.070e-12
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:    2 SNFSLLHRVNKHIHIWTGHFAFLAGAFQCYRGVELVSATDSLVFSAVE 145
            +NFSL HRVNKH HI  G FA+ AG  QCYRG+ELVS +D L+FSAV+
Sbjct:   24 NNFSLFHRVNKHFHISAGWFAYAAGLVQCYRGLELVSGSDKLIFSAVD 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18795.5136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FX04_ECTSI5.950e-2555.17Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
D7G7J2_ECTSI7.210e-2458.82Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI1.350e-2352.87Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI7.670e-2255.29Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQ31_9PHAE5.330e-1468.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX59_9PHAE1.360e-1360.00Cytochrome b5 heme-binding domain-containing prote... [more]
D8LB74_ECTSI3.070e-1266.67Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18795contigH-elongata_contig18795:5559..6613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size265
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18795.5136.1prot_H-elongata_contig18795.5136.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18795 5559..6612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.903628-CDS-H-elongata_contig18795:5558..55831622930074.903628-CDS-H-elongata_contig18795:5558..5583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18795 5559..5583 +
1691679271.0195575-CDS-H-elongata_contig18795:5558..55831691679271.0195575-CDS-H-elongata_contig18795:5558..5583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18795 5559..5583 +
1622930074.9184768-CDS-H-elongata_contig18795:6096..62341622930074.9184768-CDS-H-elongata_contig18795:6096..6234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18795 6097..6234 +
1691679271.029418-CDS-H-elongata_contig18795:6096..62341691679271.029418-CDS-H-elongata_contig18795:6096..6234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18795 6097..6234 +
1622930074.9340377-CDS-H-elongata_contig18795:6511..66121622930074.9340377-CDS-H-elongata_contig18795:6511..6612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18795 6512..6612 +
1691679271.038903-CDS-H-elongata_contig18795:6511..66121691679271.038903-CDS-H-elongata_contig18795:6511..6612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18795 6512..6612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18795.5136.1

>prot_H-elongata_contig18795.5136.1 ID=prot_H-elongata_contig18795.5136.1|Name=mRNA_H-elongata_contig18795.5136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
LKLFSSSPGQQAHPHLDRTLCVPCWSVPMLPRCRTRLRDRQPCLLRRRRL
GGIRVWKLRCCVRLRDAHLVRGRGRRFLFLGDEEAAEE
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mRNA from alignment at H-elongata_contig18795:5559..6613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18795.5136.1 ID=mRNA_H-elongata_contig18795.5136.1|Name=mRNA_H-elongata_contig18795.5136.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-elongata_contig18795:5559..6613+ (Himanthalia elongata Himel1 dioecious)
CTCAAACTTTTCTCTTCTTCACCGGGTTCGTGTATCTATCTAGAGCTATA
AGGGTGACCTTGTTTGTTTTGCCATATGTTTTCGTTGTCTTATGTAAGTC
TAGGAGTCCACATAATATACTCGAAGGGGTGACGTCTTCCGCAAACGAGC
AGGCGCGGAGCCAAGCTCCTATCGAAGAGCCTGACGTGCTCGACGGAAGT
CCTCCACTCTCCTGCCTTGCGAGGGATGCAATGGCTTTGCGCTTACGGTG
CATGTCGGAGTCGTTGTGATACCCCCCTCCCGAGAGCTGGGCGTCGAGGC
CGTGGTACCTTGGTTTGAGCATTTGGAGCGAAACTATTGTAGGGGCGCTC
CATACTGTGCTGCCCTGCAAAATGTTTGTATACGGGAAGCGGTAAATACC
CGTTATAATCATTACCCGTTCCCCATTAAACTGTCGGTCGCATCGATAGT
GTCCCACCACCCTCCCGGCGCGGGATGGGTTGATATTATTTGTTGAGTAA
ATCATAACCTTTGTGTTCTGGGTGTTGACGTGCCACAGGTCAACAAGCAC
ATCCACATCTGGACCGGACACTTTGCGTTCCTTGCTGGAGCGTTCCAATG
TTACCGCGGTGTCGAACTCGTCTCCGCGACCGACAGCCTTGTCTTCTCCG
CCGTCGAAGACTTGGTGGAATTCGAGGTGAAAAATAAAATACTTCTCTAT
TTTACAAGGGAAAACGTAGCCAGAGGTTCCCTGGAAAAGCGCTCGGCTTT
CGACTAGGTGAGCGTATGGTCTGAGTAGCGCGCTCTCGTGAGTTTCGGGA
CCTCATCAACTTGGTAGATTTTGTTACCTCTACCGTTCAACCTCCATCCC
TCCCGTCAACGCGTCCATATTGACAATATTTTCAACAATTGTCGAATACA
AAAAATATTCCGAATAAAACCTAGCCAACACAATGCTGGCTCCATCCCTG
CAGTTTGGAAACTTCGGTGTTGTGTACGACTACGTGATGCCCATCTGGTT
CGGGGTCGTGGCCGTCGTTTTCTTTTTCTTGGAGACGAGGAAGCAGCTGA
AGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig18795:5559..6613+

>mRNA_H-elongata_contig18795.5136.1 ID=mRNA_H-elongata_contig18795.5136.1|Name=mRNA_H-elongata_contig18795.5136.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig18795:5559..6613+ (Himanthalia elongata Himel1 dioecious)
CTCAAACTTTTCTCTTCTTCACCGGCTCAAACTTTTCTCTTCTTCACCGG
GTCAACAAGCACATCCACATCTGGACCGGACACTTTGCGTTCCTTGCTGG
AGCGTTCCAATGTTACCGCGGTGTCGAACTCGTCTCCGCGACCGACAGCC
TTGTCTTCTCCGCCGTCGAAGACTTGGTGGAATTCGAGGTCAACAAGCAC
ATCCACATCTGGACCGGACACTTTGCGTTCCTTGCTGGAGCGTTCCAATG
TTACCGCGGTGTCGAACTCGTCTCCGCGACCGACAGCCTTGTCTTCTCCG
CCGTCGAAGACTTGGTGGAATTCGAGTTTGGAAACTTCGGTGTTGTGTAC
GACTACGTGATGCCCATCTGGTTCGGGGTCGTGGCCGTCGTTTTCTTTTT
CTTGGAGACGAGGAAGCAGCTGAAGAGTTTGGAAACTTCGGTGTTGTGTA
CGACTACGTGATGCCCATCTGGTTCGGGGTCGTGGCCGTCGTTTTCTTTT
TCTTGGAGACGAGGAAGCAGCTGAAGAG
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