mRNA_H-elongata_contig187900.5134.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187900.5134.1
Unique NamemRNA_H-elongata_contig187900.5134.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187900.5134.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.390e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 RWEEALTTLREMEAMDGVTKGGEWRKALHLLLRMINSGVQPDTIAYNTSIRA 156
            RW+EAL  LREMEA D VT GGEWRKALHLLL+MINSG++PDTIAYN SI A
Sbjct:  650 RWKEALEILREMEARDDVT-GGEWRKALHLLLKMINSGIEPDTIAYNASISA 700
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187900.5134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIK7_ECTSI1.390e-1778.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187900contigH-elongata_contig187900:697..1087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FIK7
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.6926048-CDS-H-elongata_contig187900:696..8011622930074.6926048-CDS-H-elongata_contig187900:696..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187900 697..801 -
1691679270.9754899-CDS-H-elongata_contig187900:696..8011691679270.9754899-CDS-H-elongata_contig187900:696..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187900 697..801 -
1622930074.728911-CDS-H-elongata_contig187900:1030..10871622930074.728911-CDS-H-elongata_contig187900:1030..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187900 1031..1087 -
1691679270.9885159-CDS-H-elongata_contig187900:1030..10871691679270.9885159-CDS-H-elongata_contig187900:1030..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187900 1031..1087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187900.5134.1prot_H-elongata_contig187900.5134.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187900 697..1087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187900.5134.1

>prot_H-elongata_contig187900.5134.1 ID=prot_H-elongata_contig187900.5134.1|Name=mRNA_H-elongata_contig187900.5134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RWEEALTTLREMEAMDGVTKGGEWRKALHLLLRMINSGVQPDTIAYNTSI
RAR*
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mRNA from alignment at H-elongata_contig187900:697..1087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187900.5134.1 ID=mRNA_H-elongata_contig187900.5134.1|Name=mRNA_H-elongata_contig187900.5134.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=391bp|location=Sequence derived from alignment at H-elongata_contig187900:697..1087- (Himanthalia elongata Himel1 dioecious)
AGATGGGAAGAGGCACTAACAACCTTGCGGGAGATGGAAGCCATGGACGG
GGTCACGGTGAGACAGAGAGACTATGACAGAGAGACAGAGACTATGACAA
AGAGATAGTTCGCGCGTGATTTGCCATCGCTTTTTCTCCACAGTCTTGAA
ATGAGCCAAGACCAGCCCCAAACAAACTTGCTGCTGCATTTTAACACTAA
ATTATCCGACATGGTACCGTACTGGGTCGGGGAAAAAACAAAAGCCAAAC
GTGGTGTGTTTCAGCTCGGCGATCACGGCATGCGAGAAAGGTGGCGAGTG
GCGCAAGGCACTCCACCTTCTCTTGAGGATGATCAACTCCGGGGTGCAGC
CAGACACCATCGCCTACAACACTTCCATCAGGGCGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig187900:697..1087-

>mRNA_H-elongata_contig187900.5134.1 ID=mRNA_H-elongata_contig187900.5134.1|Name=mRNA_H-elongata_contig187900.5134.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig187900:697..1087- (Himanthalia elongata Himel1 dioecious)
AGATGGGAAGAGGCACTAACAACCTTGCGGGAGATGGAAGCCATGGACGG
GGTCACGAGATGGGAAGAGGCACTAACAACCTTGCGGGAGATGGAAGCCA
TGGACGGGGTCACGAAAGGTGGCGAGTGGCGCAAGGCACTCCACCTTCTC
TTGAGGATGATCAACTCCGGGGTGCAGCCAGACACCATCGCCTACAACAC
TTCCATCAGGGCGAGGTAGAAAGGTGGCGAGTGGCGCAAGGCACTCCACC
TTCTCTTGAGGATGATCAACTCCGGGGTGCAGCCAGACACCATCGCCTAC
AACACTTCCATCAGGGCGAGGTAG
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