mRNA_H-elongata_contig1879.5133.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI) HSP 1 Score: 111 bits (277), Expect = 5.460e-25 Identity = 120/309 (38.83%), Postives = 151/309 (48.87%), Query Frame = 1
Query: 1 MRHMTKVYNKVWDSYVQGKPGGILPSGSQSEDALDYVLNGVYAITAGN---PIEEEYLDDDTENDAHGEGGGG--DAGRR*GIF----IGAGRGRRE*EAARQ*GGSRDAEEQKPDDHSRDKGVDGLL*RSK**RGWISGQTRQLDGPVSSHLLPY-REARQQ*GP*PPYRMEKVRPEESQRKTDGEEGIAQHQRVEWIEGEQSVHRGR--SLVVGDPNIT--------GSGESESLAEVK-ETAAVAAANAQTQARQIHETNTAKLVRTVEALSAVVVSRHALDQGATARARMADAR-KRKRKIEALR 861
MR M K YNKVWDS V+G+PG LPSG Q DALDY+LNGVY ++ GN PIE E +DDD +NDA G G D GR G + G G E E G E + S D + + G + D + +LL Y R P R + RKT G +G Q+ + S G S D +++ G+GES S A+VK E AVAAANAQ QAR++ +T+T KLV VEA SA VVSR ALD+ A R+ AR +K KI+ LR
Sbjct: 1 MREMKKTYNKVWDSLVEGQPGENLPSGEQEGDALDYLLNGVYHLSTGNAEDPIELEDIDDDLDNDADDGGAAGLQDNGRNDGESPPGQVEDGGGAEESEGGAPAVGGIKEEPAVGNQGSGDGAPSDNIEEAD------GGYPDRPDKWMHPYLLTYCLIGRPSSSEDPDLR--------TTRKTSGPKGRGGKQKSKRGSPGTSDESGSETSGAYTDVDLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARRVQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLR 295
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE) HSP 1 Score: 109 bits (273), Expect = 7.330e-25 Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 2
Query: 356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIR 619
SED + +GG+PDR + WM PYLLTYCLIGRP SSEDPDL TA + SGPK GKQ A+K S ST++ SGS+ S YTEV L SS IR
Sbjct: 84 SEDIEEVDGGYPDRSNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRAGKQKAQKESPSTSDGSGSETSGAYTEVGLSSSAIR 171
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE) HSP 1 Score: 109 bits (273), Expect = 9.010e-25 Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 2
Query: 380 GGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
GG+PDRP+ WM PYLLT CL+GRP SSEDPDL TA + SGPK GKQ AKK S ST++ SGS+ S YTEVDL SS IR+
Sbjct: 117 GGYPDRPNKWMHPYLLTCCLVGRPSSSEDPDLRTARKTSGPKGRGGKQKAKKGSPSTSDGSGSETSGAYTEVDLSSSAIRM 197
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.070e-23 Identity = 58/89 (65.17%), Postives = 65/89 (73.03%), Query Frame = 2
Query: 356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
SED + +GG PDRP+ WM PYLLTYCLIGRP SSEDPDL TA + SG K GKQ AKK S ST + SGS+ S YTEVDL SS IR+
Sbjct: 70 SEDIEEVDGGCPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGLKGRGGKQNAKKGSPSTIDGSGSETSGAYTEVDLSSSAIRM 158
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KF57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF57_9PHAE) HSP 1 Score: 103 bits (256), Expect = 4.420e-22 Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 2
Query: 356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKG--------KQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
SE+ + EEGGFP RP+ WM YLLT+CLIGRP SSEDPDL TA + SGPK KQ AKK S T++ SGS+AS YTEVDL S+ IRI
Sbjct: 162 SEEISREEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGPKGRGASXXXXXXXKQKAKKASSGTSDESGSEASGAYTEVDLSSNAIRI 258
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.200e-20 Identity = 56/97 (57.73%), Postives = 64/97 (65.98%), Query Frame = 2
Query: 356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSH--------KGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
SE+ EEGGFP RP WM YLLT+CLIGRP SSEDPDL TA + SG K GKQ AKK S T++ SGS+AS YTEVDL S+ IR+
Sbjct: 178 SEEITREEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGAKGRGAXXXXXXXGKQKAKKGSPGTSDESGSEASGAYTEVDLSSNAIRM 274
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5JWI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI7_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 6.260e-20 Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 2
Query: 356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHK--------GKQMAKKVSLSTNE*SGSKASSPYTEV 595
SE+ EEGGFP RP+ WM YLLT+CLIGRP SSEDPDL TA + SGPK GKQ AKK S T++ SGS+AS YTEV
Sbjct: 35 SEEITQEEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGPKGRGAYGAKGRGGKQKAKKGSPGTSDESGSEASGAYTEV 122
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KE98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE98_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.590e-19 Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 2
Query: 374 EEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSH--------KGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRILP 628
E GGFP RP+ WM Y+LT+CLIGRP SSEDPDL T + SGPK GKQ AKK S T++ SGS+AS YTEVD S +P
Sbjct: 23 EAGGFPQRPNKWMHQYVLTFCLIGRPCSSEDPDLRTVRKTSGPKGRGAXXXXXXXGKQKAKKGSPGTSDESGSEASGAYTEVDXCGSTASSVP 115
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 2.210e-19 Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 2
Query: 410 MDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
M PYLLTYCLIGRP SSEDPDL TA + SGPK GKQ AKK S ST++ SGS+ S YT+VDL SS IR+
Sbjct: 1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKAKKGSPSTSDGSGSETSGAYTDVDLSSSAIRM 71
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.650e-17 Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 2
Query: 410 MDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
M PYLLTYCLIGRP SSEDPDL TA + SGPK GKQ K S ST++ SGS+ S YT+VDL SS IR+
Sbjct: 1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKVKNGSPSTSDGSGSETSGAYTDVDLSSSAIRM 71 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1879.5133.1 >prot_H-elongata_contig1879.5133.1 ID=prot_H-elongata_contig1879.5133.1|Name=mRNA_H-elongata_contig1879.5133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp MRHMTKVYNKVWDSYVQGKPGGILPSGSQSEDALDYVLNGVYAITAGNPIback to top mRNA from alignment at H-elongata_contig1879:8115..9743+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1879.5133.1 ID=mRNA_H-elongata_contig1879.5133.1|Name=mRNA_H-elongata_contig1879.5133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1629bp|location=Sequence derived from alignment at H-elongata_contig1879:8115..9743+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1879:8115..9743+ >mRNA_H-elongata_contig1879.5133.1 ID=mRNA_H-elongata_contig1879.5133.1|Name=mRNA_H-elongata_contig1879.5133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig1879:8115..9743+ (Himanthalia elongata Himel1 dioecious)back to top |