mRNA_H-elongata_contig18772.5126.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18772.5126.1
Unique NamemRNA_H-elongata_contig18772.5126.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18772.5126.1 vs. uniprot
Match: D7FWR6_ECTSI (Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR6_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 5.970e-5
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   34 DWGSEGEEEFMNMLNFAMDDEDVEAGQTMPATSSALDFLGWDEEEDQQADEAQDDYDDDLVGYKEDAKTANG---HGSRSRRKQL 279
            DWG++GEEEFM+MLN AM+++D E  +T    +  ++ L  D E D  AD   D+ D   +  KE +++      +GSRSRRKQL
Sbjct:  776 DWGADGEEEFMSMLNLAMEEQDAELSRTKGGAAMDMELLDMDME-DSIADATADENDGVDMSDKEVSRSGGVLGCNGSRSRRKQL 859
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18772.5126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR6_ECTSI5.970e-542.35Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrola... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18772contigH-elongata_contig18772:3352..5161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18772.5126.1prot_H-elongata_contig18772.5126.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18772 3352..5161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.5071526-CDS-H-elongata_contig18772:3351..34471622930072.5071526-CDS-H-elongata_contig18772:3351..3447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18772 3352..3447 +
1691679270.437423-CDS-H-elongata_contig18772:3351..34471691679270.437423-CDS-H-elongata_contig18772:3351..3447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18772 3352..3447 +
1622930072.526292-CDS-H-elongata_contig18772:4489..45801622930072.526292-CDS-H-elongata_contig18772:4489..4580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18772 4490..4580 +
1691679270.449087-CDS-H-elongata_contig18772:4489..45801691679270.449087-CDS-H-elongata_contig18772:4489..4580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18772 4490..4580 +
1622930072.5430582-CDS-H-elongata_contig18772:5069..51611622930072.5430582-CDS-H-elongata_contig18772:5069..5161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18772 5070..5161 +
1691679270.4575226-CDS-H-elongata_contig18772:5069..51611691679270.4575226-CDS-H-elongata_contig18772:5069..5161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18772 5070..5161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18772.5126.1

>prot_H-elongata_contig18772.5126.1 ID=prot_H-elongata_contig18772.5126.1|Name=mRNA_H-elongata_contig18772.5126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
RPWNGGLVEYDDWGSEGEEEFMNMLNFAMDDEDVEAGQTMPATSSALDFL
GWDEEEDQQADEAQDDYDDDLVGYKEDAKTANGHGSRSRRKQL
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mRNA from alignment at H-elongata_contig18772:3352..5161+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18772.5126.1 ID=mRNA_H-elongata_contig18772.5126.1|Name=mRNA_H-elongata_contig18772.5126.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1810bp|location=Sequence derived from alignment at H-elongata_contig18772:3352..5161+ (Himanthalia elongata Himel1 dioecious)
AGGCCCTGGAACGGTGGTCTCGTGGAATACGACGATTGGGGTTCGGAGGG
GGAAGAAGAGTTTATGAACATGCTCAACTTCGCCATGGACGACGAGGTGA
GGCAAAATGTACTGCTTCGTGTATCCCAATGCGTATAGGAAAAATGCGGT
GAGGGGGTTGGGGGTCGGACTTGTGCTAAATTATTGGAAAAGTCACGCAC
TTTTGTCATCCGCGTCCGCGTTGACGCTTGGTGCTCATGTATGTGTTGCG
TGTGAGGGTGCGGTGGCATTGAAATGGATGTTACATATGTCAAGTAATAC
GTGTGTCTGTCTCGTTAAAAAATTAAAGGTGGGATGCGTTCTGCATATAG
ATAGATATATATATACTATTGGCGATTTTTCCTAATTTCTACTGCGCTAC
AATTGATGTGCGCCATTTCTGCTCAAACCATATCTTGAGAGACGAAATTG
AAATAGCTCCAGACACTTTCGATGGTCAGGTCTAGAAGACGAGATAAAAC
GTTTGGCGTGCGCCATCCATGACTTTCGCTCCAAAAGACAGCAACAACGC
AAGAGCACTTGTGGACATGGTGGTGGCCGTGCTAAAAAAGAAAAGAAAAC
CAATGTATGGCGATCGCGTCCATAAGGCCTCGTCTCGATCAGGCTAAAAA
CTGGGAGCTTTCAAATTAGAAATACGATCCGCGCGTGTATGTAGTGTGTG
TTCATATCTCGTCACAAACAAATCTGAGGTGTGGCACGTCCGTCTGCCTC
TGCTTTGAAGTGTGGAGATTTATGATCGTTCTCGTTTTCTTGCCCCTGCC
CCCGTCATTTTGCCCTGGTCGCGATCGTGAAATGCTCGACTTATTTCATT
TACGTGATGTATATCTTTTGTGAAATGTTTCCAGCGGTGTATACGTGGAA
GACAAGCGCGACGGAGGGGGAGGGGGAGGTGCCGCTGCTTTAGTGATCAC
GCCGTGAGGACTATGCCTTTCGCTTCCTCATAAAAGTACCACGTATAACG
TAACATTACTTCGCTCCGTGTGGACATCCTTCACCCACCCCCCATCTTTG
CCGTACAGTACTCATACGGAATATCCCCCCCCCGCCAATACACATATTTA
TATAGATATTATATATATATATATATCAAATGTTTCAGGACGTCGAAGCC
GGCCAGACAATGCCAGCAACGTCCTCGGCCCTCGACTTTCTGGGGTGGGA
CGAGGAGGAGGACCAGCAGGCAGATGAAGGTGTTTAAAAAAATAATGATT
GATTGTATCGTACTTTTTTAACCTCTGTAGGGCTAGTAGCTCCTGCGTGC
GCCATCGCGGCAACGATATGTAAATATATACATTGACTCCACGAGCCGAA
GTTTCTTACGGCCTCAAAGATCGTACATTTATCATGCGGCTGGTTGCGTG
AGTGGACCAGAAGGAGTCGCATTTTCATAACAGTTTATGCGCAACAAGTA
CTCACGGGGTTTTTTATTGTTGTTAACCGGCTAAATCGTACATGCCACGG
AGTACCCTGCCCCCGCATGAGCGGTTTGGTGAAAGCGTTTACTCTGTATA
ACACCACTTTACTATAATGATCATTCCGTTCGCGCATATGCATGCAGTGC
GGGCCGTGTGATTTGGAAATATTCGCTGCGATGAAAAGCTCCTAACTTCC
CTATGCTACTCCCCGCCCCCACCCTACCCTCCCAACTCAACCTTCGCGTT
CGTTGACTTGTCCTGAAGCTCAAGACGACTACGACGACGATTTAGTGGGG
TACAAGGAGGACGCGAAGACCGCAAACGGACACGGGTCTCGCTCCCGCCG
CAAACAGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig18772:3352..5161+

>mRNA_H-elongata_contig18772.5126.1 ID=mRNA_H-elongata_contig18772.5126.1|Name=mRNA_H-elongata_contig18772.5126.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig18772:3352..5161+ (Himanthalia elongata Himel1 dioecious)
AGGCCCTGGAACGGTGGTCTCGTGGAATACGACGATTGGGGTTCGGAGGG
GGAAGAAGAGTTTATGAACATGCTCAACTTCGCCATGGACGACGAGAGGC
CCTGGAACGGTGGTCTCGTGGAATACGACGATTGGGGTTCGGAGGGGGAA
GAAGAGTTTATGAACATGCTCAACTTCGCCATGGACGACGAGGACGTCGA
AGCCGGCCAGACAATGCCAGCAACGTCCTCGGCCCTCGACTTTCTGGGGT
GGGACGAGGAGGAGGACCAGCAGGCAGATGAAGGACGTCGAAGCCGGCCA
GACAATGCCAGCAACGTCCTCGGCCCTCGACTTTCTGGGGTGGGACGAGG
AGGAGGACCAGCAGGCAGATGAAGCTCAAGACGACTACGACGACGATTTA
GTGGGGTACAAGGAGGACGCGAAGACCGCAAACGGACACGGGTCTCGCTC
CCGCCGCAAACAGCTCCTCAAGACGACTACGACGACGATTTAGTGGGGTA
CAAGGAGGACGCGAAGACCGCAAACGGACACGGGTCTCGCTCCCGCCGCA
AACAGCTC
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