mRNA_H-elongata_contig18770.5125.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18770.5125.1
Unique NamemRNA_H-elongata_contig18770.5125.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18770.5125.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.850e-59
Identity = 103/124 (83.06%), Postives = 111/124 (89.52%), Query Frame = 1 
Query:    1 RNADGTSVLQKRMERAIYDAIRSGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGELDLVKDLMRRNSNPSVKDSHGNLPVDLAAMQGKDEVVAFLQPLAPSTTAFTIAAHKRHRQKQQQLK 372
            RN DGTSVL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG LDLVKDL  R ++P+VKDSHGNLPVDLAAMQGKDEVV FLQPLAPS T FTIAAH+RHR+  Q+ K
Sbjct:  876 RNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSKTPFTIAAHQRHRRVSQEQK 999
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BLAST of mRNA_H-elongata_contig18770.5125.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 4.470e-58
Identity = 95/111 (85.59%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:    1 RNADGTSVLQKRMERAIYDAIRSGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGELDLVKDLMRRNSNPSVKDSHGNLPVDLAAMQGKDEVVAFLQPLAPSTTAFTIA 333
            RN DGTSVL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG LDLVKDL  R ++P+VKDSHGNLPVDLAAMQGKD VV FLQPLAPS T FTIA
Sbjct:  165 RNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSKTPFTIA 275
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BLAST of mRNA_H-elongata_contig18770.5125.1 vs. uniprot
Match: A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA)

HSP 1 Score: 57.0 bits (136), Expect = 9.080e-7
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 1 
Query:   34 RMERAIYDAIRSGDTHPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGELDLVKDLMRRNSNPSVKDSHGNLPVDLAAMQGKDEVVAFLQPL 303
            R  R     +  G T     L++ G  PN   R  G T LH AA  G LD V+ L+   ++P  +D   ++P DLAA  G ++V +FLQ L
Sbjct:   36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126
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BLAST of mRNA_H-elongata_contig18770.5125.1 vs. uniprot
Match: A0A0C9Q7V4_9HYME (Git2_0 protein n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9Q7V4_9HYME)

HSP 1 Score: 55.5 bits (132), Expect = 3.540e-5
Identity = 30/115 (26.09%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:   31 KRMERAIYDAIRSGDTHPIVGLIRAGVSPN-FKRPAGETCLHAAAYCGELDLVKDLMRRNSNPSVKDSHGNLPVDLAAMQG----KDEVVAFLQPLAPSTTAFTIAAHKRHRQKQ 360
            + + + ++ ++R+G+    + L+  G +PN F +  G   LH AA  G+   V+ L+    NPS+ DS+G+ P+++A M G     + +V  +  +    T F  +    HR ++
Sbjct:  131 EELSKQLHSSVRTGNLETSLRLLAQGANPNYFYKEKGTNPLHVAARAGQALQVELLIANGGNPSLIDSNGHTPMEIARMSGHLELSERLVECMYEVTDRLTFFVCSRKPDHRSQE 245
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BLAST of mRNA_H-elongata_contig18770.5125.1 vs. uniprot
Match: A0A0C9R497_9HYME (GIT2_1 protein n=2 Tax=Opiinae TaxID=68883 RepID=A0A0C9R497_9HYME)

HSP 1 Score: 55.5 bits (132), Expect = 4.230e-5
Identity = 30/115 (26.09%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:   31 KRMERAIYDAIRSGDTHPIVGLIRAGVSPN-FKRPAGETCLHAAAYCGELDLVKDLMRRNSNPSVKDSHGNLPVDLAAMQG----KDEVVAFLQPLAPSTTAFTIAAHKRHRQKQ 360
            + + + ++ ++R+G+    + L+  G +PN F +  G   LH AA  G+   V+ L+    NPS+ DS+G+ P+++A M G     + +V  +  +    T F  +    HR ++
Sbjct:  131 EELSKQLHSSVRTGNLETSLRLLAQGANPNYFYKEKGTNPLHVAARAGQALQVELLIANGGNPSLIDSNGHTPMEIARMSGHLELSERLVECMYEVTDRLTFFVCSRKPDHRSQE 245
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BLAST of mRNA_H-elongata_contig18770.5125.1 vs. uniprot
Match: A0A2E6T4H9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T4H9_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 9.100e-5
Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   13 GTSVLQKRMER--AIYDAIRSGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGELDLVKDLMRRNSNPS----VKDSHGNLPVDLAAMQGKDEVV 285
            G +V  K ++   A+ +AI+ G+T     L+  G SPN     G TCLH AAY G++D+ K L+  N++      V    G  P+D AAM GK + +
Sbjct:  398 GANVHAKGVKERDALMEAIKIGNTEVAALLLDNGASPNSVDEDGVTCLHIAAYRGQVDICKKLLAGNADKDATVKVGPKKGFKPID-AAMDGKHQEI 493
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18770.5125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KU86_9PHAE1.850e-5983.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD31_ECTSI4.470e-5885.59Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A672H3I0_SALFA9.080e-736.26Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A0C9Q7V4_9HYME3.540e-526.09Git2_0 protein n=1 Tax=Fopius arisanus TaxID=64838... [more]
A0A0C9R497_9HYME4.230e-526.09GIT2_1 protein n=2 Tax=Opiinae TaxID=68883 RepID=A... [more]
A0A2E6T4H9_9BACT9.100e-536.08Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18770contigH-elongata_contig18770:341..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size802
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18770.5125.1prot_H-elongata_contig18770.5125.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18770 484..1268 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.439363-UTR-H-elongata_contig18770:340..4831622930072.439363-UTR-H-elongata_contig18770:340..483Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18770 341..483 +
1691679270.393052-UTR-H-elongata_contig18770:340..4831691679270.393052-UTR-H-elongata_contig18770:340..483Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18770 341..483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.453014-CDS-H-elongata_contig18770:483..8701622930072.453014-CDS-H-elongata_contig18770:483..870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18770 484..870 +
1691679270.4129415-CDS-H-elongata_contig18770:483..8701691679270.4129415-CDS-H-elongata_contig18770:483..870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18770 484..870 +
1622930072.4679484-CDS-H-elongata_contig18770:998..12681622930072.4679484-CDS-H-elongata_contig18770:998..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18770 999..1268 +
1691679270.4231672-CDS-H-elongata_contig18770:998..12681691679270.4231672-CDS-H-elongata_contig18770:998..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18770 999..1268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18770.5125.1

>prot_H-elongata_contig18770.5125.1 ID=prot_H-elongata_contig18770.5125.1|Name=mRNA_H-elongata_contig18770.5125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
MSPCSCLLRRARPGEGPDAAELKPLGEGLARESSCGSRGDAGEGRSGGVL
AAPRTVYNGFHHRGAQATSTKAAAAQTAAAAAGATKAAAGAAQAAAGAAQ
AAAGRAAAAAAGAAKAGTGATQAAAAGAARAQVSCLSHCSFLNIINNIRS
SSSINRSSSINRSRFSFSSLRPSLPPTTLTLTMPPPRRINISIVRKTRSS
GSRIHSSSSINNIHSSSSS
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mRNA from alignment at H-elongata_contig18770:341..1268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18770.5125.1 ID=mRNA_H-elongata_contig18770.5125.1|Name=mRNA_H-elongata_contig18770.5125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig18770:341..1268+ (Himanthalia elongata Himel1 dioecious)
AGGAACGCCGACGGCACGAGTGTGCTCCAGAAGCGCATGGAGCGGGCCAT
TTATGATGCCATTCGCTCCGGCGACACTCATCCCATTGTTGGCCTCATCA
GAGCTGGTGTGTCTCCAAATTTCAAGCGCCCGGCGGGAGAGACATGTCTC
CATGCAGCTGCCTACTGCGGCGAGCTAGACCTGGTGAAGGACCTGATGCG
GCGGAACTCAAACCCCTCGGTGAAGGACTCGCACGGGAATCTTCCTGTGG
ATCTCGCGGCGATGCAGGGGAAGGACGAAGTGGTGGCGTTCTTGCAGCCC
CTCGCACCGTCTACAACGGCTTTCACCATCGCGGCGCACAAGCGACATCG
ACAAAAGCAGCAGCAGCTCAAACAGCAGCAGCAGCAGCAGGAGCAACTAA
AGCAGCAGCAGGAGCAGCTCAAGCAGCAGCAGGAGCAGCTCAAGCAGCAG
CAGGAAGAGCAGCAGCAGCAGCAGCAGGAGCAGCAAAAGCAGGAACAGGA
GCAACTCAAGCAGCAGCAGCAGGAGCAGCAGTTACAGCAGCTACATTTAC
AACAGCAGCAGCAGCAGTTACAGCAGCAGCAGCAGCAGCATCAGCCGTAT
CAGCACCAGCAGTATCAGCTGCAATACGTGGCGCCTGGTCATCCTCAAGT
ACCCCAAGCGCGCCCAGGTTTCATGCCTCTCCCACTGCTCCTTCCTCAAC
ATCATCAACAACATCCGCAGCAGCAGCAGCATCAACCGCAGCAGCAGCAT
CAACCGCAGCCGCTTCAGCTTCAGCAGCCTCCGCCCCTCTTTGCCCCCCA
CAACCCTAACCCTAACAATGCCTCCACCCCGCCGTATCAACATCAGTATC
GTGCGCAAAACTCGCTCCAGCGGCAGCCGCATCCACAGCAGCAGCAGCAT
CAACAACATCCACAGCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig18770:341..1268+

>mRNA_H-elongata_contig18770.5125.1 ID=mRNA_H-elongata_contig18770.5125.1|Name=mRNA_H-elongata_contig18770.5125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig18770:341..1268+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCCATGCAGCTGCCTACTGCGGCGAGCTAGACCTGGTGAAGGACC
TGATGCGGCGGAACTCAAACCCCTCGGTGAAGGACTCGCACGGGAATCTT
CCTGTGGATCTCGCGGCGATGCAGGGGAAGGACGAAGTGGTGGCGTTCTT
GCAGCCCCTCGCACCGTCTACAACGGCTTTCACCATCGCGGCGCACAAGC
GACATCGACAAAAGCAGCAGCAGCTCAAACAGCAGCAGCAGCAGCAGGAG
CAACTAAAGCAGCAGCAGGAGCAGCTCAAGCAGCAGCAGGAGCAGCTCAA
GCAGCAGCAGGAAGAGCAGCAGCAGCAGCAGCAGGAGCAGCAAAAGCAGG
AACAGGAGCAACTCAAGCAGCAGCAGCAGGAGCAGCAATGTCTCCATGCA
GCTGCCTACTGCGGCGAGCTAGACCTGGTGAAGGACCTGATGCGGCGGAA
CTCAAACCCCTCGGTGAAGGACTCGCACGGGAATCTTCCTGTGGATCTCG
CGGCGATGCAGGGGAAGGACGAAGTGGTGGCGTTCTTGCAGCCCCTCGCA
CCGTCTACAACGGCTTTCACCATCGCGGCGCACAAGCGACATCGACAAAA
GCAGCAGCAGCTCAAACAGCAGCAGCAGCAGCAGGAGCAACTAAAGCAGC
AGCAGGAGCAGCTCAAGCAGCAGCAGGAGCAGCTCAAGCAGCAGCAGGAA
GAGCAGCAGCAGCAGCAGCAGGAGCAGCAAAAGCAGGAACAGGAGCAACT
CAAGCAGCAGCAGCAGGAGCAGCACGCGCCCAGGTTTCATGCCTCTCCCA
CTGCTCCTTCCTCAACATCATCAACAACATCCGCAGCAGCAGCAGCATCA
ACCGCAGCAGCAGCATCAACCGCAGCCGCTTCAGCTTCAGCAGCCTCCGC
CCCTCTTTGCCCCCCACAACCCTAACCCTAACAATGCCTCCACCCCGCCG
TATCAACATCAGTATCGTGCGCAAAACTCGCTCCAGCGGCAGCCGCATCC
ACAGCAGCAGCAGCATCAACAACATCCACAGCAGCAGCAGCAGCCGCGCC
CAGGTTTCATGCCTCTCCCACTGCTCCTTCCTCAACATCATCAACAACAT
CCGCAGCAGCAGCAGCATCAACCGCAGCAGCAGCATCAACCGCAGCCGCT
TCAGCTTCAGCAGCCTCCGCCCCTCTTTGCCCCCCACAACCCTAACCCTA
ACAATGCCTCCACCCCGCCGTATCAACATCAGTATCGTGCGCAAAACTCG
CTCCAGCGGCAGCCGCATCCACAGCAGCAGCAGCATCAACAACATCCACA
GCAGCAGCAGCAGC
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