mRNA_H-elongata_contig187556.5119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187556.5119.1
Unique NamemRNA_H-elongata_contig187556.5119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.940e-16
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VGR+WR E+E+KIEKWQE+QTAKTKKALPKPDDMPARKRGG+R
Sbjct:  386 VGRQWRAEVEDKIEKWQEMQTAKTKKALPKPDDMPARKRGGRR 428
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BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: M4C0I9_HYAAE (Nop domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0I9_HYAAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VG R+R E+ EK+EKWQE Q AKTKKALP PD+ P+RKRGGKR
Sbjct:  356 VGARFRTELVEKMEKWQEPQKAKTKKALPIPDEKPSRKRGGKR 398
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BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A7S2XZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            +G++ R E+E+KIEKWQE Q AKTKKALP PD  P +KRGGKR
Sbjct:  290 LGKKLRTELEDKIEKWQEPQKAKTKKALPAPDSKPKKKRGGKR 332
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BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A836CKH5_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VGRR+R E+E K+EKWQE   AK K+ALPKPD+ P  KRGGKR
Sbjct:  338 VGRRFRSELEAKLEKWQEPDQAKIKRALPKPDEAPKSKRGGKR 380
[Close]
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A024U7H9_9STRA (Nop domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U7H9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            +G+++  E++EK EKWQ+ Q AKTKKALP+PD+ P RKRGGKR
Sbjct:  330 IGQQFYKELQEKFEKWQQPQKAKTKKALPRPDEKPRRKRGGKR 372
[Close]
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A0N7L588_PLAHL (U4 u6 small nuclear ribonucleoprotein prp31-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L588_PLAHL)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VG R+R E+ EK++KWQE Q AK+KKALP PD+ P RKRGGKR
Sbjct:  358 VGARFRTELVEKMDKWQEPQKAKSKKALPVPDEKPRRKRGGKR 400
[Close]
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A3R7INK8_9STRA (Nop domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7INK8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  371 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 413
[Close]
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: D0MZW3_PHYIT (U4/U6 small nuclear ribonucleoprotein Prp31 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZW3_PHYIT)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  362 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 404
[Close]
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: H3G8Y1_PHYRM (Nop domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3G8Y1_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  354 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 396
[Close]
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A225X1E4_9STRA (U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1E4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 132
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  349 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE3.940e-1686.05Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
M4C0I9_HYAAE3.260e-972.09Nop domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A7S2XZL3_9STRA1.140e-867.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CKH5_9STRA1.140e-867.44Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024U7H9_9STRA2.910e-862.79Nop domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A0N7L588_PLAHL3.980e-867.44U4 u6 small nuclear ribonucleoprotein prp31-like n... [more]
A0A3R7INK8_9STRA5.450e-869.77Nop domain-containing protein n=3 Tax=Phytophthora... [more]
D0MZW3_PHYIT5.450e-869.77U4/U6 small nuclear ribonucleoprotein Prp31 n=2 Ta... [more]
H3G8Y1_PHYRM5.450e-869.77Nop domain-containing protein n=17 Tax=Phytophthor... [more]
A0A225X1E4_9STRA5.450e-869.77U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187556contigH-elongata_contig187556:805..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue3.8e-13
Seed eggNOG ortholog2880.D8LKU3
Preferred namePRPF31
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001654,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005687,GO:0005690,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006325,GO:0006342,GO:0006346,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016604,GO:0016607,GO:0017069,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030621,GO:0030622,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034708,GO:0035097,GO:0040029,GO:0043010,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060041,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070417,GO:0070990,GO:0071005,GO:0071011,GO:0071166,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsCOG1498@1,KOG2574@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.650056-CDS-H-elongata_contig187556:804..9391622930071.650056-CDS-H-elongata_contig187556:804..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187556 805..939 +
1691679270.0788949-CDS-H-elongata_contig187556:804..9391691679270.0788949-CDS-H-elongata_contig187556:804..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187556 805..939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187556.5119.1prot_H-elongata_contig187556.5119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187556 805..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187556.5119.1

>prot_H-elongata_contig187556.5119.1 ID=prot_H-elongata_contig187556.5119.1|Name=mRNA_H-elongata_contig187556.5119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QVGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKRS
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mRNA from alignment at H-elongata_contig187556:805..939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187556.5119.1 ID=mRNA_H-elongata_contig187556.5119.1|Name=mRNA_H-elongata_contig187556.5119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig187556:805..939+ (Himanthalia elongata Himel1 dioecious)
CAGGTCGGACGTCGGTGGAGAGGAGAGATCGAGGAGAAGATCGAGAAGTG
GCAAGAGCTGCAGACGGCCAAGACTAAGAAGGCGCTTCCCAAGCCGGACG
ACATGCCCGCCCGTAAGCGTGGCGGCAAGAGGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig187556:805..939+

>mRNA_H-elongata_contig187556.5119.1 ID=mRNA_H-elongata_contig187556.5119.1|Name=mRNA_H-elongata_contig187556.5119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig187556:805..939+ (Himanthalia elongata Himel1 dioecious)
CAGGTCGGACGTCGGTGGAGAGGAGAGATCGAGGAGAAGATCGAGAAGTG
GCAAGAGCTGCAGACGGCCAAGACTAAGAAGGCGCTTCCCAAGCCGGACG
ACATGCCCGCCCGTAAGCGTGGCGGCAAGAGGTCCCAGGTCGGACGTCGG
TGGAGAGGAGAGATCGAGGAGAAGATCGAGAAGTGGCAAGAGCTGCAGAC
GGCCAAGACTAAGAAGGCGCTTCCCAAGCCGGACGACATGCCCGCCCGTA
AGCGTGGCGGCAAGAGGTCC
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