mRNA_H-elongata_contig187538.5118.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187538.5118.1
Unique NamemRNA_H-elongata_contig187538.5118.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187538.5118.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 89.0 bits (219), Expect = 3.560e-19
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    7 QVDATAYQQLLECILTNDINVCEQVPSGADGNESTRLVNPLGGGSHQVDGADSDNIFIKMP 189
            +V+  AYQ LL+CI +NDINVC+QVPSG + ++  +LVNPLGGG HQVDGADSDNIFIK P
Sbjct:  105 RVNPEAYQLLLDCIESNDINVCDQVPSGVE-SDGRKLVNPLGGGGHQVDGADSDNIFIKQP 164
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BLAST of mRNA_H-elongata_contig187538.5118.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.480e-16
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   10 VDATAYQQLLECILTNDINVCEQVPSGADGNESTRLVNPLGGGSHQVDGADSDNIFIKMP 189
            V  T+YQ+LL+C+ + D+NVC+QVPSGA      +++NPLGG +HQVDGADSDN+FI  P
Sbjct:  103 VSKTSYQKLLDCVFSADVNVCDQVPSGASA-RGAKMINPLGGTAHQVDGADSDNVFITTP 161
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BLAST of mRNA_H-elongata_contig187538.5118.1 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 80.5 bits (197), Expect = 3.390e-16
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    7 QVDATAYQQLLECILTNDINVCEQVPSGADGNESTRLVNPLGGGSHQVDGADSDNIFIKMP 189
            QVD  AY++L ECI T+DINVC+ VPSGA  N   +L NPLGG +HQV GADSDNIFI  P
Sbjct:  137 QVDEDAYKKLQECIFTSDINVCDDVPSGAKKN-GAKLTNPLGGTAHQVAGADSDNIFIPTP 196
[Close]
BLAST of mRNA_H-elongata_contig187538.5118.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 77.8 bits (190), Expect = 3.010e-15
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    7 QVDATAYQQLLECILTNDINVCEQVPSGADGNESTRLVNPLGGGSHQVDGADSDNIFIKMP 189
            QV+   YQ+LL+C+ T+DINVC+ VP+G     S +L NPLGG +HQVDGADSDN+FI  P
Sbjct:  144 QVNKDDYQKLLDCVRTSDINVCDNVPAGG----SAKLTNPLGGTAHQVDGADSDNVFIATP 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187538.5118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO3.560e-1968.85Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
D8LTP5_ECTSI2.480e-1658.33Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
A0A3G3BM34_SACJA3.390e-1665.57Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
A0A411NJW8_SACJA3.010e-1559.02Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187538contigH-elongata_contig187538:171..610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size191
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.5659974-CDS-H-elongata_contig187538:170..1951622930071.5659974-CDS-H-elongata_contig187538:170..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187538 171..195 -
1691679270.0462732-CDS-H-elongata_contig187538:170..1951691679270.0462732-CDS-H-elongata_contig187538:170..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187538 171..195 -
1622930071.6086323-CDS-H-elongata_contig187538:446..6101622930071.6086323-CDS-H-elongata_contig187538:446..610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187538 447..610 -
1691679270.0593395-CDS-H-elongata_contig187538:446..6101691679270.0593395-CDS-H-elongata_contig187538:446..610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187538 447..610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187538.5118.1prot_H-elongata_contig187538.5118.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187538 171..610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187538.5118.1

>prot_H-elongata_contig187538.5118.1 ID=prot_H-elongata_contig187538.5118.1|Name=mRNA_H-elongata_contig187538.5118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MPQVDATAYQQLLECILTNDINVCEQVPSGADGNESTRLVNPLGGGSHQV
DGADSDNIFIKMP
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mRNA from alignment at H-elongata_contig187538:171..610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187538.5118.1 ID=mRNA_H-elongata_contig187538.5118.1|Name=mRNA_H-elongata_contig187538.5118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=440bp|location=Sequence derived from alignment at H-elongata_contig187538:171..610- (Himanthalia elongata Himel1 dioecious)
ATGCCGCAGGTGGATGCCACGGCATACCAGCAGCTCCTGGAGTGCATCTT
AACCAACGACATTAATGTGTGCGAACAAGTGCCCTCAGGGGCAGATGGCA
ATGAAAGCACCAGGCTCGTCAACCCTCTCGGGGGTGGTAGTCATCAGGTG
GACGGTGCCGACAGGTATGTTACACGCTTCCGCCTATATGCATATTGACA
CTGCAAAGCTGATAAAGGAGGCATTTCTCAAAAACTTGGAGTGTCCAGAA
TGCAACCGTAGGCTGTTTGCTTTAATTACGATGATCCTGGGGTGGCGTCA
AATGTTTCTTGTGCCTACCTATTGCTGCTAACAAAATGATTCCGCCATCA
GCAATTCTGACCGCTTGCTCGTACTGTTCTGCCCTTGGTCCCCATTCTGA
TCGTCGATGATGCAGTGATAATATCTTCATCAAAATGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig187538:171..610-

>mRNA_H-elongata_contig187538.5118.1 ID=mRNA_H-elongata_contig187538.5118.1|Name=mRNA_H-elongata_contig187538.5118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig187538:171..610- (Himanthalia elongata Himel1 dioecious)
ATGCCGCAGGTGGATGCCACGGCATACCAGCAGCTCCTGGAGTGCATCTT
AACCAACGACATTAATGTGTGCGAACAAGTGCCCTCAGGGGCAGATGGCA
ATGAAAGCACCAGGCTCGTCAACCCTCTCGGGGGTGGTAGTCATCAGGTG
GACGGTGCCGACAGATGCCGCAGGTGGATGCCACGGCATACCAGCAGCTC
CTGGAGTGCATCTTAACCAACGACATTAATGTGTGCGAACAAGTGCCCTC
AGGGGCAGATGGCAATGAAAGCACCAGGCTCGTCAACCCTCTCGGGGGTG
GTAGTCATCAGGTGGACGGTGCCGACAGTGATAATATCTTCATCAAAATG
CCTTGATAATATCTTCATCAAAATGCCT
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