mRNA_H-elongata_contig187382.5112.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187382.5112.1
Unique NamemRNA_H-elongata_contig187382.5112.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: D7FGU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGU9_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 8.130e-43
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFL   E
Sbjct:  242 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLNSSE 321          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S3Y164_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y164_HETAK)

HSP 1 Score: 133 bits (335), Expect = 3.410e-35
Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    4 KALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            +A+ YEYSFP+VSNMLSSWCQYEALKYVTFPTQ+LSK FK+VPIMVMGK++GNK YP YDYVVA VI LGI++FL+  E
Sbjct:  251 RAMIYEYSFPSVSNMLSSWCQYEALKYVTFPTQMLSKCFKLVPIMVMGKVMGNKSYPMYDYVVAAVIGLGISVFLMSTE 329          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A836CEU6_9STRA (UAA transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.520e-34
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            SKALAYEYS P+V+NMLSSWCQYEALK+VTFPTQVLSK+FKI PIM+MG++LGNK YP YDY VAG I LG+ LF+   E
Sbjct:  240 SKALAYEYSLPSVTNMLSSWCQYEALKFVTFPTQVLSKAFKIAPIMLMGRMLGNKSYPLYDYCVAGTIGLGVALFVTSSE 319          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: F0Y0E4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0E4_AURAN)

HSP 1 Score: 120 bits (300), Expect = 7.150e-31
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            S A+AY ++FP+VSNMLSSWCQYEALKYV+FPTQ+L K FK+ PIMVMGK+LGNK YP YDYVVA VI +GI +F V  E
Sbjct:   84 SNAVAYRFAFPSVSNMLSSWCQYEALKYVSFPTQMLFKCFKLFPIMVMGKVLGNKVYPTYDYVVALVIGVGIAVFSVSTE 163          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S0AH51_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH51_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.010e-30
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   10 LAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            + YEYSFP++SNMLSSWCQYEALKYV+FP   L KSFK+ P+M MGK+LGNKEYP YDYVVA  I LGIT+F+   E
Sbjct:   19 IIYEYSFPSISNMLSSWCQYEALKYVSFPAATLFKSFKLAPVMAMGKMLGNKEYPQYDYVVALFIGLGITMFMSGSE 95          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S2BZ86_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ86_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.550e-29
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    7 ALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            A+ YE+SFP+VSNMLSSW QYEALKYV+FPTQ+L K FK+VPIM+MGK LGNK YP YDYVV  +I  GI +F+V  E
Sbjct:   71 AVVYEFSFPSVSNMLSSWTQYEALKYVSFPTQMLFKCFKLVPIMLMGKFLGNKSYPAYDYVVCFMIGFGIAIFMVSTE 148          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S2CE74_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CE74_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.350e-29
Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    4 KALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            +A+ YE+SFP+VSNMLSSWCQYEALKY++FPT +L K FK+VPIM+MGK LGNK YP YDYVV+ +I  GI LF++  E
Sbjct:  207 EAIIYEFSFPSVSNMLSSWCQYEALKYISFPTAMLFKCFKLVPIMLMGKYLGNKTYPAYDYVVSLLIGFGIALFMISTE 285          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A4D9CRX1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRX1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.890e-29
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            S A  YEYSFP+VSNMLSSWCQYEAL YVTFPTQ LSKSFK+VPIM+MG++L NK YP Y+Y  A  I LG TLF++  E
Sbjct:  235 SSAPLYEYSFPSVSNMLSSWCQYEALAYVTFPTQTLSKSFKLVPIMLMGRMLTNKRYPLYEYATAISIGLGNTLFMMATE 314          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S3ZN87_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZN87_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.560e-28
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    7 ALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
            A+AY ++FP+VSNMLSSWCQYEALKYV+FPTQ+L K FK+ PIM MGK+LGNK YP YDY VA  I +GI +F V  E
Sbjct:  196 AIAYRFAFPSVSNMLSSWCQYEALKYVSFPTQMLFKCFKLFPIMAMGKLLGNKNYPSYDYGVAAAIGVGIAVFSVATE 273          
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S1VXV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VXV3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.760e-28
Identity = 49/71 (69.01%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   16 YEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFL 228
            YEYSFP++SNM+SSWCQYEAL+YV+FP   L KSFK+ P+M+MGKILGNK YP YDY+VA +I +GIT+F+
Sbjct:  280 YEYSFPSISNMMSSWCQYEALRYVSFPATTLFKSFKLGPVMIMGKILGNKSYPQYDYIVAVMIGVGITMFM 350          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGU9_ECTSI8.130e-4396.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3Y164_HETAK3.410e-3577.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CEU6_9STRA6.520e-3475.00UAA transporter family-domain-containing protein n... [more]
F0Y0E4_AURAN7.150e-3171.25Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0AH51_9STRA1.010e-3070.13Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2BZ86_9STRA1.550e-2969.23Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2CE74_9STRA3.350e-2967.09Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A4D9CRX1_9STRA6.890e-2970.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3ZN87_9STRA1.560e-2867.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1VXV3_9STRA3.760e-2869.01Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187382contigH-elongata_contig187382:113..1017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3e-35
Seed eggNOG ortholog2880.D7FGU9
Preferred nameSLC35B2
KEGG koko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
GOsGO:0000003,GO:0000139,GO:0000295,GO:0003002,GO:0003006,GO:0003674,GO:0005215,GO:0005346,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006029,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007310,GO:0007389,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009798,GO:0009950,GO:0009953,GO:0009987,GO:0009994,GO:0012505,GO:0015012,GO:0015075,GO:0015215,GO:0015216,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015868,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022857,GO:0030154,GO:0030166,GO:0030173,GO:0030176,GO:0030201,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034035,GO:0034036,GO:0034220,GO:0034641,GO:0034645,GO:0034654,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046390,GO:0046483,GO:0046963,GO:0046964,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050427,GO:0050428,GO:0051179,GO:0051234,GO:0051503,GO:0051704,GO:0055085,GO:0055086,GO:0071702,GO:0071704,GO:0071705,GO:0072348,GO:0072521,GO:0072522,GO:0072530,GO:0090407,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901135,GO:1901137,GO:1901264,GO:1901293,GO:1901360,GO:1901362,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1901679,GO:1901682,GO:1902559
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUAA transporter
Ec32 orthologEc-11_000740.1
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.941885-CDS-H-elongata_contig187382:112..2621622930070.941885-CDS-H-elongata_contig187382:112..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187382 113..262 -
1691679269.7186365-CDS-H-elongata_contig187382:112..2621691679269.7186365-CDS-H-elongata_contig187382:112..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187382 113..262 -
1622930070.9600065-CDS-H-elongata_contig187382:915..10171622930070.9600065-CDS-H-elongata_contig187382:915..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187382 916..1017 -
1691679269.7500126-CDS-H-elongata_contig187382:915..10171691679269.7500126-CDS-H-elongata_contig187382:915..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187382 916..1017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187382.5112.1prot_H-elongata_contig187382.5112.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187382 113..1017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187382.5112.1

>prot_H-elongata_contig187382.5112.1 ID=prot_H-elongata_contig187382.5112.1|Name=mRNA_H-elongata_contig187382.5112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGK
ILGNKEYPFYDYVVAGVIALGITLFLVRHEVIK*
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mRNA from alignment at H-elongata_contig187382:113..1017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187382.5112.1 ID=mRNA_H-elongata_contig187382.5112.1|Name=mRNA_H-elongata_contig187382.5112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig187382:113..1017- (Himanthalia elongata Himel1 dioecious)
TCTAAGGCGCTGGCGTACGAGTACTCTTTTCCCGCCGTGTCCAACATGCT CAGCTCCTGGTGCCAGTACGAGGCGCTCAAGTACGTCACATTCCCGACCC AGGTAATATATTTATATTGTGGCCTACGTCATGCCATGAAAAACGCCTCC CCAAGTTTCTGTTTTTGTAGGGATTATCGAGTATACAAGACTGTTAGGTC ATGTGCCGTGAAATGCGCCTCCCGAATGTATAGATTATAGTATAAAAACT ATAATACATCATGCCATATACCGTGAAACTCCTCCCCCCTTCGAGTGTAT GGATTACAGGATGCAAAATTATTTTGTCGCGTGCCACGGGTCATACCCCT CGTGTCTCCTCATATGTATTGATTATAGTATGCAGATCTTCCTATTTTCC CCCTCCAGTGTAGAGCTAGCTAGATACCTATAGTTGGTGTACTACACAAA ATAAATAAAATCGATACGTGATGTTATCCTGTAGCGGCTTGGAACGAAAT GTGCTCGTGCATGATTTGATAGTCCGTGTTTGTGTAAATGTATGTGCGTG TGTGTGCATCACATATAAAGCATATTAGAGTATGGACCAACCGGATGTGT GTGACTGACGGCAATGGCTGTGACTGATCACCCACATCCACTAACCATCC ACGAACCGCGACTTTCTTCGTCCATCGGTAACGCCGCGTGATTGGCTCGG CTCCCGTCGGATTTTGACCTGATTGGCCGGGGACCGGGGATGCGGTCGTG CGAAGGTTCTGTCGAAGAGCTTCAAGATTGTCCCGATCATGGTAATGGGT AAGATACTCGGCAACAAAGAGTATCCGTTTTACGATTACGTGGTGGCAGG CGTTATCGCCCTCGGCATCACCCTTTTCCTGGTGAGGCATGAAGTAATAA AGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig187382:113..1017-

>mRNA_H-elongata_contig187382.5112.1 ID=mRNA_H-elongata_contig187382.5112.1|Name=mRNA_H-elongata_contig187382.5112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig187382:113..1017- (Himanthalia elongata Himel1 dioecious)
TCTAAGGCGCTGGCGTACGAGTACTCTTTTCCCGCCGTGTCCAACATGCT
CAGCTCCTGGTGCCAGTACGAGGCGCTCAAGTACGTCACATTCCCGACCC
AGTCTAAGGCGCTGGCGTACGAGTACTCTTTTCCCGCCGTGTCCAACATG
CTCAGCTCCTGGTGCCAGTACGAGGCGCTCAAGTACGTCACATTCCCGAC
CCAGGTTCTGTCGAAGAGCTTCAAGATTGTCCCGATCATGGTAATGGGTA
AGATACTCGGCAACAAAGAGTATCCGTTTTACGATTACGTGGTGGCAGGC
GTTATCGCCCTCGGCATCACCCTTTTCCTGGTGAGGCATGAAGTAATAAA
GTGAGTTCTGTCGAAGAGCTTCAAGATTGTCCCGATCATGGTAATGGGTA
AGATACTCGGCAACAAAGAGTATCCGTTTTACGATTACGTGGTGGCAGGC
GTTATCGCCCTCGGCATCACCCTTTTCCTGGTGAGGCATGAAGTAATAAA
GTGA
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