mRNA_H-elongata_contig187382.5112.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: D7FGU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGU9_ECTSI) HSP 1 Score: 154 bits (389), Expect = 8.130e-43 Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 1
Query: 1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFL E
Sbjct: 242 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLNSSE 321
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S3Y164_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y164_HETAK) HSP 1 Score: 133 bits (335), Expect = 3.410e-35 Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 1
Query: 4 KALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
+A+ YEYSFP+VSNMLSSWCQYEALKYVTFPTQ+LSK FK+VPIMVMGK++GNK YP YDYVVA VI LGI++FL+ E
Sbjct: 251 RAMIYEYSFPSVSNMLSSWCQYEALKYVTFPTQMLSKCFKLVPIMVMGKVMGNKSYPMYDYVVAAVIGLGISVFLMSTE 329
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A836CEU6_9STRA (UAA transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU6_9STRA) HSP 1 Score: 130 bits (327), Expect = 6.520e-34 Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
SKALAYEYS P+V+NMLSSWCQYEALK+VTFPTQVLSK+FKI PIM+MG++LGNK YP YDY VAG I LG+ LF+ E
Sbjct: 240 SKALAYEYSLPSVTNMLSSWCQYEALKFVTFPTQVLSKAFKIAPIMLMGRMLGNKSYPLYDYCVAGTIGLGVALFVTSSE 319
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: F0Y0E4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0E4_AURAN) HSP 1 Score: 120 bits (300), Expect = 7.150e-31 Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query: 1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
S A+AY ++FP+VSNMLSSWCQYEALKYV+FPTQ+L K FK+ PIMVMGK+LGNK YP YDYVVA VI +GI +F V E
Sbjct: 84 SNAVAYRFAFPSVSNMLSSWCQYEALKYVSFPTQMLFKCFKLFPIMVMGKVLGNKVYPTYDYVVALVIGVGIAVFSVSTE 163
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S0AH51_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH51_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.010e-30 Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 10 LAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
+ YEYSFP++SNMLSSWCQYEALKYV+FP L KSFK+ P+M MGK+LGNKEYP YDYVVA I LGIT+F+ E
Sbjct: 19 IIYEYSFPSISNMLSSWCQYEALKYVSFPAATLFKSFKLAPVMAMGKMLGNKEYPQYDYVVALFIGLGITMFMSGSE 95
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S2BZ86_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ86_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.550e-29 Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query: 7 ALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
A+ YE+SFP+VSNMLSSW QYEALKYV+FPTQ+L K FK+VPIM+MGK LGNK YP YDYVV +I GI +F+V E
Sbjct: 71 AVVYEFSFPSVSNMLSSWTQYEALKYVSFPTQMLFKCFKLVPIMLMGKFLGNKSYPAYDYVVCFMIGFGIAIFMVSTE 148
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S2CE74_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CE74_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.350e-29 Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 1
Query: 4 KALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
+A+ YE+SFP+VSNMLSSWCQYEALKY++FPT +L K FK+VPIM+MGK LGNK YP YDYVV+ +I GI LF++ E
Sbjct: 207 EAIIYEFSFPSVSNMLSSWCQYEALKYISFPTAMLFKCFKLVPIMLMGKYLGNKTYPAYDYVVSLLIGFGIALFMISTE 285
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A4D9CRX1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRX1_9STRA) HSP 1 Score: 116 bits (291), Expect = 6.890e-29 Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query: 1 SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
S A YEYSFP+VSNMLSSWCQYEAL YVTFPTQ LSKSFK+VPIM+MG++L NK YP Y+Y A I LG TLF++ E
Sbjct: 235 SSAPLYEYSFPSVSNMLSSWCQYEALAYVTFPTQTLSKSFKLVPIMLMGRMLTNKRYPLYEYATAISIGLGNTLFMMATE 314
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S3ZN87_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZN87_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.560e-28 Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 7 ALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFLVRHE 240
A+AY ++FP+VSNMLSSWCQYEALKYV+FPTQ+L K FK+ PIM MGK+LGNK YP YDY VA I +GI +F V E
Sbjct: 196 AIAYRFAFPSVSNMLSSWCQYEALKYVSFPTQMLFKCFKLFPIMAMGKLLGNKNYPSYDYGVAAAIGVGIAVFSVATE 273
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Match: A0A7S1VXV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VXV3_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.760e-28 Identity = 49/71 (69.01%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 16 YEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKILGNKEYPFYDYVVAGVIALGITLFL 228
YEYSFP++SNM+SSWCQYEAL+YV+FP L KSFK+ P+M+MGKILGNK YP YDY+VA +I +GIT+F+
Sbjct: 280 YEYSFPSISNMMSSWCQYEALRYVSFPATTLFKSFKLGPVMIMGKILGNKSYPQYDYIVAVMIGVGITMFM 350 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187382.5112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig187382.5112.1 >prot_H-elongata_contig187382.5112.1 ID=prot_H-elongata_contig187382.5112.1|Name=mRNA_H-elongata_contig187382.5112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp SKALAYEYSFPAVSNMLSSWCQYEALKYVTFPTQVLSKSFKIVPIMVMGKback to top mRNA from alignment at H-elongata_contig187382:113..1017- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig187382.5112.1 ID=mRNA_H-elongata_contig187382.5112.1|Name=mRNA_H-elongata_contig187382.5112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig187382:113..1017- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig187382:113..1017- >mRNA_H-elongata_contig187382.5112.1 ID=mRNA_H-elongata_contig187382.5112.1|Name=mRNA_H-elongata_contig187382.5112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig187382:113..1017- (Himanthalia elongata Himel1 dioecious)back to top |