mRNA_H-elongata_contig187335.5109.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187335.5109.1
Unique NamemRNA_H-elongata_contig187335.5109.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig187335.5109.1 vs. uniprot
Match: A0A6H5JNM9_9PHAE (TauD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM9_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.320e-6
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 PSMVARVELQPGDTVILNNHRTMHGRESFEVR 96
            PS+VAR+ L+PG+ VILNNHR +HGRESF+ R
Sbjct:  378 PSLVARIVLEPGECVILNNHRALHGRESFKGR 409
[Close]
BLAST of mRNA_H-elongata_contig187335.5109.1 vs. uniprot
Match: D7FLG7_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG7_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.020e-5
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 PSMVARVELQPGDTVILNNHRTMHGRESFEVR 96
            PS+VAR+ L+PG+ VIL+NHR +HGRESF+ R
Sbjct:  220 PSLVARIVLEPGECVILDNHRALHGRESFKGR 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187335.5109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNM9_9PHAE2.320e-668.75TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FLG7_ECTSI1.020e-565.63TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187335contigH-elongata_contig187335:849..1004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.6610858-CDS-H-elongata_contig187335:848..9981622930070.6610858-CDS-H-elongata_contig187335:848..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187335 849..998 -
1691679269.6098158-CDS-H-elongata_contig187335:848..9981691679269.6098158-CDS-H-elongata_contig187335:848..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187335 849..998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.6777713-UTR-H-elongata_contig187335:998..10041622930070.6777713-UTR-H-elongata_contig187335:998..1004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187335 999..1004 -
1691679269.6214552-UTR-H-elongata_contig187335:998..10041691679269.6214552-UTR-H-elongata_contig187335:998..1004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187335 999..1004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187335.5109.1prot_H-elongata_contig187335.5109.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187335 849..998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187335.5109.1

>prot_H-elongata_contig187335.5109.1 ID=prot_H-elongata_contig187335.5109.1|Name=mRNA_H-elongata_contig187335.5109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MVARVELQPGDTVILNNHRTMHGRESFEVRIPALSQFLIYLNFSSFRGLP
back to top

mRNA from alignment at H-elongata_contig187335:849..1004-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187335.5109.1 ID=mRNA_H-elongata_contig187335.5109.1|Name=mRNA_H-elongata_contig187335.5109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig187335:849..1004- (Himanthalia elongata Himel1 dioecious)
CCGTCTATGGTTGCTCGTGTCGAACTACAGCCGGGGGACACGGTGATTCT
GAACAACCACCGAACGATGCATGGGCGGGAATCATTCGAGGTGAGGATCC
CCGCTTTATCTCAATTCCTTATTTATCTCAATTTTTCATCATTCCGAGGT
CTCCCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig187335:849..1004-

>mRNA_H-elongata_contig187335.5109.1 ID=mRNA_H-elongata_contig187335.5109.1|Name=mRNA_H-elongata_contig187335.5109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig187335:849..1004- (Himanthalia elongata Himel1 dioecious)
ATGGTTGCTCGTGTCGAACTACAGCCGGGGGACACGGTGATTCTGAACAA
CCACCGAACGATGCATGGGCGGGAATCATTCGAGGTGAGGATCCCCGCTT
TATCTCAATTCCTTATTTATCTCAATTTTTCATCATTCCGAGGTCTCCCT
ATGGTTGCTCGTGTCGAACTACAGCCGGGGGACACGGTGATTCTGAACAA
CCACCGAACGATGCATGGGCGGGAATCATTCGAGGTGAGGATCCCCGCTT
TATCTCAATTCCTTATTTATCTCAATTTTTCATCATTCCGAGGTCTCCCT
back to top