mRNA_H-elongata_contig187298.5104.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187298.5104.1
Unique NamemRNA_H-elongata_contig187298.5104.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187298.5104.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.810e-42
Identity = 82/132 (62.12%), Postives = 103/132 (78.03%), Query Frame = 1 
Query:    1 GASQSVKVMALSYVVIIVIFMGALVPAVANRNFRLQSKESYIWMNEKRKLALTRAYLLLRNPIDHTVRLKDWIQLMSFLRPDCDQGWASALFKNAKKAEDKFCP--GDEASDRLSKGGFFMLCALGKARFSK 390
              ++ ++VM LSY VI+VIF+GALVPAVANRNF+ QSKESY W+ E+RKLALTRA++LLR   D TV  +DW++LM+ LRPDC+ G  SALF  AKKAED+     G++  +RLSKGGFFMLCALG A FS+
Sbjct:  281 AGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRTVGREDWVRLMACLRPDCNAGHTSALFDAAKKAEDETVSLGGEDDRNRLSKGGFFMLCALGTASFSR 412
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BLAST of mRNA_H-elongata_contig187298.5104.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.080e-36
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:    1 GASQSVKVMALSYVVIIVIFMGALVPAVANRNFRLQSKESYIWMNEKRKLALTRAYLLLRNPIDHTVRLKDWIQLMSFLRPDCDQGWASALFKNAKKAEDKFCP--GDEASDRLSKGGFFMLCALGKARFSK 390
              ++ ++VM LSY VI+VIF+GALVPAVANRNF+      Y W+ E+R+LALTRA++LLR   D TV  +DW++LM+ LRPDC+ G  SALF  AKKA+D+     G++  +RLSKGGFFMLCALG A FS+
Sbjct:  418 AGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQ----HHYNWVKEQRRLALTRAFMLLRREEDGTVGREDWVRLMACLRPDCNAGHTSALFDAAKKADDETVSFGGEDDRNRLSKGGFFMLCALGTASFSR 545
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187298.5104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR41_ECTSI3.810e-4262.12Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5L0T6_9PHAE6.080e-3656.82Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187298contigH-elongata_contig187298:172..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size390
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187298.5104.1prot_H-elongata_contig187298.5104.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187298 172..1109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.1432018-CDS-H-elongata_contig187298:171..3001622930070.1432018-CDS-H-elongata_contig187298:171..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187298 172..300 -
1691679269.3483436-CDS-H-elongata_contig187298:171..3001691679269.3483436-CDS-H-elongata_contig187298:171..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187298 172..300 -
1622930070.1547203-CDS-H-elongata_contig187298:557..6991622930070.1547203-CDS-H-elongata_contig187298:557..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187298 558..699 -
1691679269.355956-CDS-H-elongata_contig187298:557..6991691679269.355956-CDS-H-elongata_contig187298:557..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187298 558..699 -
1622930070.1714227-CDS-H-elongata_contig187298:1014..11091622930070.1714227-CDS-H-elongata_contig187298:1014..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187298 1015..1109 -
1691679269.3631094-CDS-H-elongata_contig187298:1014..11091691679269.3631094-CDS-H-elongata_contig187298:1014..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187298 1015..1109 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.1940403-UTR-H-elongata_contig187298:1109..11331622930070.1940403-UTR-H-elongata_contig187298:1109..1133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187298 1110..1133 -
1691679269.3756678-UTR-H-elongata_contig187298:1109..11331691679269.3756678-UTR-H-elongata_contig187298:1109..1133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187298 1110..1133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187298.5104.1

>prot_H-elongata_contig187298.5104.1 ID=prot_H-elongata_contig187298.5104.1|Name=mRNA_H-elongata_contig187298.5104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MALSYVVIIVIFMGALVPAVANRNFRLQSKESYIWMNEKRKLALTRAYLL
LRNPIDHTVRLKDWIQLMSFLRPDCDQGWASALFKNAKKAEDKFCPGDEA
SDRLSKGGFFMLCALGKARFSK
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mRNA from alignment at H-elongata_contig187298:172..1133-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187298.5104.1 ID=mRNA_H-elongata_contig187298.5104.1|Name=mRNA_H-elongata_contig187298.5104.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=962bp|location=Sequence derived from alignment at H-elongata_contig187298:172..1133- (Himanthalia elongata Himel1 dioecious)
GGGGCATCACAGAGCGTGAAAGTGATGGCTCTGTCGTACGTGGTGATCAT
CGTGATCTTCATGGGCGCTTTGGTCCCCGCCGTCGCTAACCGAAATTTCC
GGCTCCAGTCAAAGGAAAGGTGAGTACAGTACAACCTCTTGTGTCTTGGT
ATGTCTTGGTGAGTCTCTTTTCATTCATCTCTGTGCCTCTCTTCTTTTTA
GTATGTTTATATAAATATATATATATATGTATATATATGTATATGTCGAT
ATGACTCCCTGTCCTCTGTCTCATGTCTCCGTTTCCCTGAAAATAACAAG
CGACGGGACTGTTTGAATGTAACCGCCGGTCCCCGCTCGATTTTGACCCA
CCCCTTTGTAGGATTAGCAAACGTAAGCGACCCTGCTCGGTGCCTTGTGC
AAAATTTATTTCACCGATTGGTTTGATGATGCAGCTATATCTGGATGAAC
GAGAAGCGGAAGCTGGCGCTCACGCGAGCCTACCTCCTGCTGAGGAACCC
GATCGACCACACCGTCCGCCTGAAGGACTGGATTCAGCTTATGTCATTCT
TACGCCCTGACTGCGATCAAGGATGGGTGAGGGATTATCCAAGAGAGCGT
TCGTGGGAGGCTCTCTCTTTCTGTCCCGTCCTGCCATGTAAATCATTTGC
GTTCGTGTAGTATGTGTTTGTCTCTGTGCCCCATATACATCCAAATTGTT
TATTTTTTTTGCCTAATGTAATATTTTGTCGTAAGGTAATTTTATGTTTT
TGTTGTATTTTTTTAGATGCCTTTGATCCATATAATACATACTTGTCCCG
AATTTGTTGGCTGTTGGTTTTTCTGTCGACCAGGCATCAGCGCTTTTTAA
AAATGCGAAGAAGGCGGAAGATAAATTCTGCCCTGGAGACGAAGCCTCGG
ATCGGCTTTCCAAAGGAGGCTTTTTCATGCTGTGCGCCCTTGGCAAGGCT
CGCTTCTCAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig187298:172..1133-

>mRNA_H-elongata_contig187298.5104.1 ID=mRNA_H-elongata_contig187298.5104.1|Name=mRNA_H-elongata_contig187298.5104.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig187298:172..1133- (Himanthalia elongata Himel1 dioecious)
ATGGCTCTGTCGTACGTGGTGATCATCGTGATCTTCATGGGCGCTTTGGT
CCCCGCCGTCGCTAACCGAAATTTCCGGCTCCAGTCAAAGGAAAGATGGC
TCTGTCGTACGTGGTGATCATCGTGATCTTCATGGGCGCTTTGGTCCCCG
CCGTCGCTAACCGAAATTTCCGGCTCCAGTCAAAGGAAAGCTATATCTGG
ATGAACGAGAAGCGGAAGCTGGCGCTCACGCGAGCCTACCTCCTGCTGAG
GAACCCGATCGACCACACCGTCCGCCTGAAGGACTGGATTCAGCTTATGT
CATTCTTACGCCCTGACTGCGATCAAGGATGGCTATATCTGGATGAACGA
GAAGCGGAAGCTGGCGCTCACGCGAGCCTACCTCCTGCTGAGGAACCCGA
TCGACCACACCGTCCGCCTGAAGGACTGGATTCAGCTTATGTCATTCTTA
CGCCCTGACTGCGATCAAGGATGGGCATCAGCGCTTTTTAAAAATGCGAA
GAAGGCGGAAGATAAATTCTGCCCTGGAGACGAAGCCTCGGATCGGCTTT
CCAAAGGAGGCTTTTTCATGCTGTGCGCCCTTGGCAAGGCTCGCTTCTCA
AAGGCATCAGCGCTTTTTAAAAATGCGAAGAAGGCGGAAGATAAATTCTG
CCCTGGAGACGAAGCCTCGGATCGGCTTTCCAAAGGAGGCTTTTTCATGC
TGTGCGCCCTTGGCAAGGCTCGCTTCTCAAAG
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