mRNA_H-elongata_contig187293.5103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187293.5103.1
Unique NamemRNA_H-elongata_contig187293.5103.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 4.030e-39
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDR 270
            +DSDAIKLFVGQIPKHMEE+DLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCAR SADAAI+ALHGQRRLDR
Sbjct:   39 KDSDAIKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARVSADAAIAALHGQRRLDR 113
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A212CEU7_CEREH (RRM domain-containing protein n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A212CEU7_CEREH)

HSP 1 Score: 108 bits (269), Expect = 6.860e-29
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 276
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG IF+L VI+DK +GLH+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGVS 78
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: UPI0007623B6E (CUGBP Elav-like family member 3 n=1 Tax=Marmota marmota marmota TaxID=9994 RepID=UPI0007623B6E)

HSP 1 Score: 108 bits (271), Expect = 1.390e-28
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSSL 282
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG IF+L VI+DK +GLH+GCAFLTYCAR SA  A SALH Q+ L  VS++
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGVSAV 80
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A851SQB2_CERFA (CELF3 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A851SQB2_CERFA)

HSP 1 Score: 107 bits (266), Expect = 1.610e-28
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 276
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVS 78
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A3Q3DZY3_HIPCM (RRM domain-containing protein n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q3DZY3_HIPCM)

HSP 1 Score: 107 bits (268), Expect = 1.890e-28
Identity = 51/81 (62.96%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:   40 TPQDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSSL 282
            T  ++DAIKLFVGQIP+++EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS+L
Sbjct:   20 TGHEADAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVSAL 100
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A7L4CTA8_9AVES (CELF3 protein (Fragment) n=8 Tax=Aves TaxID=8782 RepID=A0A7L4CTA8_9AVES)

HSP 1 Score: 106 bits (264), Expect = 4.070e-28
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 276
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:   10 KEPDAIKLFVGQIPRHLEERDLKPIFEQFGRIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVS 86
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: UPI001C685AF0 (CUGBP Elav-like family member 3 n=1 Tax=Lagopus leucura TaxID=30410 RepID=UPI001C685AF0)

HSP 1 Score: 107 bits (267), Expect = 4.240e-28
Identity = 50/78 (64.10%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSS 279
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS+
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVSA 79
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A803XYZ6_MELGA (RRM domain-containing protein n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=A0A803XYZ6_MELGA)

HSP 1 Score: 107 bits (266), Expect = 6.740e-28
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 276
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVS 78
[Close]
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A836CK81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK81_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.950e-28
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRL 264
            +D DAIKLFVGQIPKHME D L P+F EFG+IFDL +IRDK +G+HRGCAFLT+C RASA+AAI ALHG R+L
Sbjct:   13 KDPDAIKLFVGQIPKHMESDALLPLFSEFGDIFDLTIIRDKQTGVHRGCAFLTFCTRASAEAAIQALHGNRKL 85
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BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A4W5N857_9TELE (RRM domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5N857_9TELE)

HSP 1 Score: 105 bits (262), Expect = 9.470e-28
Identity = 49/78 (62.82%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:   46 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSS 279
            +++DAIKLFVGQIP+++EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS+
Sbjct:    2 KEADAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVST 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV60_ECTSI4.030e-3994.67Trinucleotide repeat containing 4, isoform CRA_d n... [more]
A0A212CEU7_CEREH6.860e-2967.53RRM domain-containing protein n=3 Tax=Boreoeutheri... [more]
UPI0007623B6E1.390e-2865.82CUGBP Elav-like family member 3 n=1 Tax=Marmota ma... [more]
A0A851SQB2_CERFA1.610e-2864.94CELF3 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
A0A3Q3DZY3_HIPCM1.890e-2862.96RRM domain-containing protein n=1 Tax=Hippocampus ... [more]
A0A7L4CTA8_9AVES4.070e-2864.94CELF3 protein (Fragment) n=8 Tax=Aves TaxID=8782 R... [more]
UPI001C685AF04.240e-2864.10CUGBP Elav-like family member 3 n=1 Tax=Lagopus le... [more]
A0A803XYZ6_MELGA6.740e-2864.94RRM domain-containing protein n=1 Tax=Meleagris ga... [more]
A0A836CK81_9STRA8.950e-2873.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4W5N857_9TELE9.470e-2862.82RRM domain-containing protein n=1 Tax=Hucho hucho ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187293contigH-elongata_contig187293:368..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue1.8e-33
Seed eggNOG ortholog2880.D7FV60
Preferred nameCELF2
KEGG rclassRC00002,RC00017
KEGG koko:K00852,ko:K02177,ko:K13207
KEGG ReactionR01051,R02750
KEGG Pathwayko00030,ko04320,map00030,map04320
GOsGO:0000003,GO:0000166,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0000900,GO:0001889,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007010,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007319,GO:0007346,GO:0007368,GO:0007389,GO:0007568,GO:0008016,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0008380,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009626,GO:0009628,GO:0009648,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010228,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010927,GO:0012501,GO:0012505,GO:0014743,GO:0014881,GO:0016020,GO:0016043,GO:0016049,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016477,GO:0016604,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019827,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0030371,GO:0030718,GO:0031016,GO:0031032,GO:0031047,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031369,GO:0031536,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0034050,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0035194,GO:0035239,GO:0035295,GO:0035770,GO:0036002,GO:0036094,GO:0036099,GO:0036464,GO:0040007,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0040029,GO:0042692,GO:0042802,GO:0042803,GO:0042835,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045087,GO:0045182,GO:0045214,GO:0045495,GO:0045595,GO:0045597,GO:0045787,GO:0045840,GO:0045927,GO:0045931,GO:0045935,GO:0046011,GO:0046483,GO:0046700,GO:0046983,GO:0048024,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048546,GO:0048565,GO:0048568,GO:0048573,GO:0048580,GO:0048583,GO:0048584,GO:0048588,GO:0048589,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048870,GO:0050684,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0055001,GO:0055002,GO:0055123,GO:0060255,GO:0060293,GO:0061008,GO:0061013,GO:0061014,GO:0061031,GO:0061061,GO:0061113,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080151,GO:0090066,GO:0090068,GO:0090079,GO:0090257,GO:0090304,GO:0097159,GO:0097435,GO:0098727,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1903311,GO:1903313,GO:1903522,GO:1990402,GO:1990904,GO:2000026,GO:2000028,GO:2000031,GO:2000112,GO:2000113,GO:2000241,GO:2000736,GO:2000738,GO:2001023,GO:2001025,GO:2001038,GO:2001040
EggNOG free text desc.RNA binding
EggNOG OGsKOG0144@1,KOG0144@2759
EC2.7.1.15
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.0839045-CDS-H-elongata_contig187293:367..5541622930070.0839045-CDS-H-elongata_contig187293:367..554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187293 368..554 +
1691679269.3202574-CDS-H-elongata_contig187293:367..5541691679269.3202574-CDS-H-elongata_contig187293:367..554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187293 368..554 +
1622930070.096903-CDS-H-elongata_contig187293:1077..11751622930070.096903-CDS-H-elongata_contig187293:1077..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187293 1078..1175 +
1691679269.3323162-CDS-H-elongata_contig187293:1077..11751691679269.3323162-CDS-H-elongata_contig187293:1077..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187293 1078..1175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187293.5103.1prot_H-elongata_contig187293.5103.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187293 368..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187293.5103.1

>prot_H-elongata_contig187293.5103.1 ID=prot_H-elongata_contig187293.5103.1|Name=mRNA_H-elongata_contig187293.5103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MGDFSTFVNNGYPTPQDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDL
AVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSSL*
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mRNA from alignment at H-elongata_contig187293:368..1175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187293.5103.1 ID=mRNA_H-elongata_contig187293.5103.1|Name=mRNA_H-elongata_contig187293.5103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=808bp|location=Sequence derived from alignment at H-elongata_contig187293:368..1175+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGATTTTTCCACCTTCGTTAACAACGGTTATCCTACACCCCAGGA
CTCGGACGCCATAAAGCTGTTCGTGGGACAAATCCCTAAACACATGGAGG
AAGACGACCTGAGGCCCGTGTTCGAGGAATTTGGGGAAATTTTCGATCTG
GCTGTCATCAGGGACAAGATTTCCGGTCTCCACAGAGGTAGACAAGCTTT
TCTTGATCTCTCTGCGATGAGAGTAAATCGGTGTAAGTATATCATAAGGG
TGGTACTTCAACTGTATGCATGTTGCTCTCTAACTAATGCCAGGTGGGCG
GCAGCATACGCCGGCGGCTTGTCAGATAGTCTTCCTCCACTTTTATTCAA
TCCGCCAGAAGCCAAATTTGTCCAGAAGCGTCCACGATGTATACTTCGGA
GCAGCATATACTTTTCGAGCAGTCAGCTTCATCGATGGCGGGAGAATATT
GGTAATAAGATTATCCCATTTTGGACCTGAACCCGGGCTTCGTCGCCCTT
GACCCTTGACCCGAGAGGGCAACCTACAGCTATTATACTCCTGATTTGAG
AACTTCCTTGACATTCACCTGAGCACTCTTTAATTTTTACTAGTCCCGTC
AGCTATCAAACAACTGGAACCTGTACTTGCAAATCCAGATTGCACCGCAC
CACCTCTCGTGGCACCGCATTTTTGTGTCTGCCGCTCATGTCGCCGTATG
CCGTGTGCAGGTTGTGCATTCCTGACATATTGCGCGCGGGCATCCGCAGA
CGCTGCAATCTCGGCGCTTCATGGACAGCGGAGGTTGGACCGGGTGAGCT
CTCTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig187293:368..1175+

>mRNA_H-elongata_contig187293.5103.1 ID=mRNA_H-elongata_contig187293.5103.1|Name=mRNA_H-elongata_contig187293.5103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig187293:368..1175+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGATTTTTCCACCTTCGTTAACAACGGTTATCCTACACCCCAGGA
CTCGGACGCCATAAAGCTGTTCGTGGGACAAATCCCTAAACACATGGAGG
AAGACGACCTGAGGCCCGTGTTCGAGGAATTTGGGGAAATTTTCGATCTG
GCTGTCATCAGGGACAAGATTTCCGGTCTCCACAGAGATGGGCGATTTTT
CCACCTTCGTTAACAACGGTTATCCTACACCCCAGGACTCGGACGCCATA
AAGCTGTTCGTGGGACAAATCCCTAAACACATGGAGGAAGACGACCTGAG
GCCCGTGTTCGAGGAATTTGGGGAAATTTTCGATCTGGCTGTCATCAGGG
ACAAGATTTCCGGTCTCCACAGAGGTTGTGCATTCCTGACATATTGCGCG
CGGGCATCCGCAGACGCTGCAATCTCGGCGCTTCATGGACAGCGGAGGTT
GGACCGGGTGAGCTCTCTTTAAGTTGTGCATTCCTGACATATTGCGCGCG
GGCATCCGCAGACGCTGCAATCTCGGCGCTTCATGGACAGCGGAGGTTGG
ACCGGGTGAGCTCTCTTTAA
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