mRNA_H-elongata_contig18712.5099.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig18712.5099.1 vs. uniprot
Match: D7G172_ECTSI (TPX2_importin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G172_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.050e-19 Identity = 67/137 (48.91%), Postives = 88/137 (64.23%), Query Frame = 3
Query: 1200 MQKDLKKMTRRNQLVMERTRQAVHMGNGRSNKPLTVPEGPALKTAGRLGEKVYDSSATKTVDRHG------------AKANAA--AVGRNGLTVPEPFRLSETNRPRKTI------TPQSREESLTFRESMVRMASK 1550
MQ+ LK+MTRRNQ+VMER+R+ + GN RS+KPLTVPE PA+KT GRLG KVY + K D+ G +K N A A G TVP PF+LS++NRP TP+S+E++LTFRES+ R+ +K
Sbjct: 1 MQEQLKQMTRRNQVVMERSRRTAYSGNVRSSKPLTVPESPAMKTVGRLGGKVYAAVGPK--DQVGFSPTHPAKNDPLSKDNLAQLAAQPKGPTVPAPFQLSKSNRPSSRDGGSAPGTPRSKEDTLTFRESLARIENK 135 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18712.5099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18712.5099.1 >prot_H-elongata_contig18712.5099.1 ID=prot_H-elongata_contig18712.5099.1|Name=mRNA_H-elongata_contig18712.5099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=530bp MNSPKKKFAVPQALCRSPRLVHATAAAPSDTAAIEARGLSFTLVVGNEAGback to top mRNA from alignment at H-elongata_contig18712:1447..6628+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18712.5099.1 ID=mRNA_H-elongata_contig18712.5099.1|Name=mRNA_H-elongata_contig18712.5099.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5182bp|location=Sequence derived from alignment at H-elongata_contig18712:1447..6628+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18712:1447..6628+ >mRNA_H-elongata_contig18712.5099.1 ID=mRNA_H-elongata_contig18712.5099.1|Name=mRNA_H-elongata_contig18712.5099.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3180bp|location=Sequence derived from alignment at H-elongata_contig18712:1447..6628+ (Himanthalia elongata Himel1 dioecious)back to top |