mRNA_H-elongata_contig186949.5092.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186949.5092.1
Unique NamemRNA_H-elongata_contig186949.5092.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A7S6ZPC0_9STRA (Ribosomal protein S1 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPC0_9STRA)

HSP 1 Score: 475 bits (1223), Expect = 7.230e-169
Identity = 248/253 (98.02%), Postives = 250/253 (98.81%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKRL 759
            FNKFA+ LAKY YK+KKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHI KYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKRL
Sbjct:   12 FNKFAKLLAKYNYKVKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHIPKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKRL 264          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A8F0F7B2_9PHAE (Ribosomal protein S1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7B2_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 6.920e-82
Identity = 125/252 (49.60%), Postives = 183/252 (72.62%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKR 756
            FNKF   L++Y YK+KK DILAG +IGLE  +ALVDLGL ++A LP TEI IK T   ++++NINF GEF+IL+IN    QI+VS+  VH L  WER+KQ+DF + IIY + ++SL KG++++F GLK+F+ NSHI KYYRRKK ++ F+P KF+E+K+S+H   ++ +LA   K     K GS Y+G +TSI  FGIF+N+ G++CLLHIS +  RK   +++F+  GD++ ++I+YK++E G+I   + +
Sbjct:   12 FNKFGLLLSQYDYKVKKNDILAGSIIGLESTHALVDLGLEKIAFLPLTEITIKKTGHQSKLLNINFIGEFLILDINEKTEQILVSLRYVHSLCLWERLKQIDFKHTIIYAKNEKSLNKGKLLSFNGLKIFSQNSHIPKYYRRKKDRNFFMPFKFIEIKDSVHISHVNSRLAIFSKFSRTIKIGSNYLGNVTSIKNFGIFVNVLGIQCLLHISNIPKRKKRNLNMFYKRGDQIGIEILYKDIERGKITVILNK 263          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A2I4Q389_9PHAE (30S ribosomal protein S1 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q389_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 2.210e-79
Identity = 121/253 (47.83%), Postives = 181/253 (71.54%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKRL 759
            FNKFA  L+KY YK+K+YDILAG+VIGLE  +ALVD+GL +VA LP  EI++K   +  +V+++NF GEF+IL +N   NQ +VS+ ++H L  WER+KQ+D  N IIY + + S+ +G+I+ F GLKL+A N HI KYYRRK++K  F+P KFLE+K+ +H V ++ KLA   K     K    Y G I SI  FGIF+N+ G++CLLHISE+S +K+  +  F+  G++++V+I+YK++ +G++  ++K +
Sbjct:    8 FNKFALLLSKYDYKVKQYDILAGVVIGLETTHALVDIGLKKVAFLPLQEIYVKVPNEPKEVLDMNFVGEFLILYLNKRTNQTIVSLKQIHSLYLWERLKQIDLKNTIIYAKSEHSIGRGKILDFNGLKLYALNLHIPKYYRRKREKRFFIPFKFLEIKDFLHVVQVNAKLALFNKSSINLKLNETYKGTIISIKIFGIFINLLGLQCLLHISEISRKKLLDLTEFYKPGEQIQVQILYKDIGQGKVFLTLKEV 260          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A8F0F9U3_9PHAE (Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9U3_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 8.040e-77
Identity = 123/255 (48.24%), Postives = 177/255 (69.41%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNR--KISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKRL 759
            FNKF   L+KY Y+ KK DILAGIVIG+E NYALVD GL ++  LP  EI I PTL   + +NINF GEF IL+I    N+I++S+ ++  +  W R++Q+DF N+ IY ++++S+ KG++  F GL LF  NS+I KYY R  +K+IF+P KFLE+K+  H   IS KLA   K ++    G IY G I SI  FG+F+NI G+KCLLHISE+S +  K++ ++L + +GD+L++K+IYK+ + GRI+ ++  L
Sbjct:   12 FNKFGLLLSKYSYQAKKNDILAGIVIGIESNYALVDFGLEQICFLPLKEISICPTLDLREFLNINFIGEFSILDITNRQNRIIISLRRIESIYLWNRLRQIDFSNITIYAKIEKSIGKGKLTIFNGLLLFVLNSNIPKYYLRIDRKNIFMPFKFLEVKDYYHVAHISSKLAIFSKVNNNLTIGLIYSGNIVSIRDFGVFINILGIKCLLHISEISQKQKKVTNLNLLYKVGDQLKLKVIYKDTKRGRISVTLASL 266          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A8F0FAQ9_9PHAE (Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAQ9_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 2.150e-76
Identity = 121/254 (47.64%), Postives = 176/254 (69.29%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELS--NRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKR 756
            FNKF   L+KY Y++KK DILAGI+IGLE NYALVDLGL ++  LP  EI I P +   +++N NF GEF+IL+I   +++I+VS+ ++  +  W R++Q+DF NM IY ++++ L KG+++ F GLK F  N +I KYY R  +K++F+P KFLE+K+  H   +S +LA   K +       IYIG ITSI  FGIF+N+ G+KCLLHISE+S  + KI  +   + +GD++ +KIIYK+ E GRI+ ++KR
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGLESNYALVDLGLEQICFLPLKEISIYPLVNTRELLNTNFVGEFLILDITNNHSRIIVSLKRLESIYLWNRLRQLDFTNMTIYAKIEKPLGKGKLVIFNGLKFFVLNLNIPKYYLRTNKKNLFMPFKFLEVKDYFHIAQVSSRLAIFTKVNKNLSIRKIYIGNITSIKDFGIFINVLGIKCLLHISEISQNHNKIPNLVSLYKLGDQIPIKIIYKDTERGRISVTLKR 265          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A8F0FC68_9PHAE (Ribosomal protein S1 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC68_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.530e-75
Identity = 123/253 (48.62%), Postives = 177/253 (69.96%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKRL 759
            FNKF   L++Y YK+KK DILAGIV+G+E NYALVDLGL ++ +LP  EI I       ++++INF  EF+ILNI+   ++I+VS+ +V  L  W R++QMDF NMIIY +++++L +G++I F GL  F  NS+I KYYRR   +++F+P KFLE+K+  H   +S +LA   K +     G  Y+G ITSI  FGIFLNIFG++CLLHISE+S + I  ++  +  GD++ VKI+YK+ E GRI+ ++K L
Sbjct:   12 FNKFGLILSQYSYKVKKNDILAGIVVGIESNYALVDLGLDQIGILPLNEISIHTNKNPHELLHINFICEFLILNISTNPSRIIVSLKRVESLYLWNRLRQMDFTNMIIYAKIEKTLGRGKLINFNGLVFFVLNSNIPKYYRRTNYQNLFMPFKFLEIKDYFHIAHVSSRLAGFDKVNKNLDIGQRYLGNITSIKKFGIFLNIFGIRCLLHISEISAKHILDVNKLYKRGDQVWVKILYKDTERGRISVTLKNL 264          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A0R6M9B1_UNDPI (30S ribosomal protein S1 n=11 Tax=Laminariales TaxID=2886 RepID=A0A0R6M9B1_UNDPI)

HSP 1 Score: 238 bits (608), Expect = 2.460e-75
Identity = 118/253 (46.64%), Postives = 175/253 (69.17%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNR--KISKIDLFFSIGDELRVKIIYKNVEEGRIAASIK 753
            FNKF   L+KY Y++KK DILAGI+IG+E NYALVDLGL ++  LP  EI I PT+  ++++N NF GEF+IL+I   +N+I+VS+ ++  +  W R++Q+DF NM IY ++++ L KG+++ F GL  F  NS+I KYY R   K++F+P KFLE+K+  H   +S KLA   K +     G+IYIG ITSI  FGIF+N+ G+KC LH SE+  +  K + +   + +GD++ +KIIYK+ E GRI+ +++
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGVESNYALVDLGLEQICFLPLKEISIYPTIDPSELLNTNFVGEFLILDITNNHNRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIEKPLGKGKLVIFNGLNFFVLNSNIPKYYLRTNNKNLFMPFKFLEIKDYFHIAHVSSKLAIFSKVNKNLSIGTIYIGNITSIKDFGIFINVLGIKCFLHSSEIPQKQSKTTNLASLYKLGDQILIKIIYKDTERGRISLTLE 264          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A5B9RE09_9PHAE (30S ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE09_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 4.940e-75
Identity = 117/253 (46.25%), Postives = 175/253 (69.17%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNR--KISKIDLFFSIGDELRVKIIYKNVEEGRIAASIK 753
            FNKF   L+KY Y++KK DILAGI+IG+E NYALVDLGL ++  LP  EI I PT+   +++N NF GEF+I +I   +++I+VS+ ++  +  W R++Q+DF NM IY ++++SL KG+++ F GL+ F  NS+I KYY R   K++F+P KFLE+K+  H   +S +LA   K +     G IY+G ITSI  FGIF+N+ G+KC LHISE+S +  K   +   + +GD++ +KIIYK+ E GRI+ +++
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPLKEISIYPTMDPRELLNTNFVGEFLIFDIINNSSRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIQKSLGKGKLVIFNGLRFFVLNSNIPKYYLRTNNKNLFMPFKFLEVKDYFHIAHVSSRLAIFSKVNKNLSIGKIYLGNITSIRGFGIFINVLGIKCFLHISEISQKHNKTPNLGSLYKLGDQIPIKIIYKDTERGRISVTLE 264          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A6B7EVE1_9PHAE (30S ribosomal protein S1 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVE1_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 2.910e-74
Identity = 120/252 (47.62%), Postives = 167/252 (66.27%), Query Frame = 1
Query:    1 FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISEL--SNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASI 750
            FNKF   L+KY YK+K  DILAGIV+G+E NY LVD+GL +V  LP  EI I P  K   ++NIN+ GEF+ILNIN  +N+I+VSM +V  +  W R++Q+DF N+ IY +  ESL KG++I F+ L  F  N +I KYY +     +F+P KFLE+K+S H   IS KLA   K +     G  Y+G +TSI YFG+F+NI G+ CLLHISE+   N +   I  F+ +GD++ +KII K++E GR+  ++
Sbjct:   12 FNKFGLILSKYSYKIKTNDILAGIVVGVESNYVLVDVGLDQVCFLPLKEISISPITKKIDLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYAKFGESLGKGKLITFDSLSFFVLNINIPKYYLKLNNNKLFIPFKFLEIKDSFHIAHISSKLAVFNKVNRNLVIGPTYLGNVTSIKYFGVFINILGINCLLHISEIFQKNEQTQNISSFYKLGDQIPLKIISKDLERGRVLVAL 263          
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Match: A0A8E6D6L3_9PHAE (Ribosomal protein S1 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6L3_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 1.100e-73
Identity = 122/252 (48.41%), Postives = 174/252 (69.05%), Query Frame = 1
Query:    4 NKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEIFIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQMDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFLPMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFLNIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASIKRL 759
            N+F   LAKY Y++K  DILAG +IGLE  +ALVD+GL R ALLPR EI +         + I+F GEF+IL+IN    QI+VS+ +V  +R W+RI+Q+DF N +IY   +  L KG+II F GLK F+ NSHI K+YRRKK+K+  LP KF+E+K+ IH   ++ +LA   +     + G  Y   + SI  FGIF+NI+G++CLLHISE+S  +IS I+  +  GD+L+VKI+YK++++G+I+ SIK+L
Sbjct:   13 NRFGLILAKYSYRVKLNDILAGRIIGLESTHALVDIGLERAALLPREEINVSAVNNPKAALYIDFIGEFLILSINKTTQQIIVSLKQVDCMRLWQRIRQIDFKNTVIYAINERPLRKGKIILFYGLKFFSLNSHIPKHYRRKKRKNFLLPFKFIEVKDIIHIGYLNSRLAVYPRFSQNLEVGGTYCSNVVSIKSFGIFVNIYGIQCLLHISEISYDRISDINSLYKKGDQLKVKIVYKSIQQGKISVSIKKL 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186949.5092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPC0_9STRA7.230e-16998.02Ribosomal protein S1 n=1 Tax=Schizocladia ischiens... [more]
A0A8F0F7B2_9PHAE6.920e-8249.60Ribosomal protein S1 n=1 Tax=Protohalopteris sp. T... [more]
A0A2I4Q389_9PHAE2.210e-7947.8330S ribosomal protein S1 n=1 Tax=Dictyopteris diva... [more]
A0A8F0F9U3_9PHAE8.040e-7748.24Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID... [more]
A0A8F0FAQ9_9PHAE2.150e-7647.64Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0FC68_9PHAE1.530e-7548.62Ribosomal protein S1 n=1 Tax=Desmarestia aculeata ... [more]
A0A0R6M9B1_UNDPI2.460e-7546.6430S ribosomal protein S1 n=11 Tax=Laminariales Tax... [more]
A0A5B9RE09_9PHAE4.940e-7546.2530S ribosomal protein S1 n=2 Tax=Laminariales TaxI... [more]
A0A6B7EVE1_9PHAE2.910e-7447.6230S ribosomal protein S1 n=1 Tax=Cladosiphon okamu... [more]
A0A8E6D6L3_9PHAE1.100e-7348.41Ribosomal protein S1 n=1 Tax=Ishige okamurae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186949contigH-elongata_contig186949:456..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score138.3
Seed ortholog evalue5.1e-30
Seed eggNOG ortholog1173020.Cha6605_5524
Preferred namerps1a
KEGG koko:K02945
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
EggNOG free text desc.ribosomal protein S1
EggNOG OGs1G11B@1117,COG0539@1,COG0539@2
COG Functional cat.J
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size762
Cds size762
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.006473-CDS-H-elongata_contig186949:455..12171622930069.006473-CDS-H-elongata_contig186949:455..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186949 456..1217 -
1691679268.8958387-CDS-H-elongata_contig186949:455..12171691679268.8958387-CDS-H-elongata_contig186949:455..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186949 456..1217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186949.5092.1prot_H-elongata_contig186949.5092.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186949 456..1217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186949.5092.1

>prot_H-elongata_contig186949.5092.1 ID=prot_H-elongata_contig186949.5092.1|Name=mRNA_H-elongata_contig186949.5092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
FNKFAECLAKYIYKLKKYDILAGIVIGLEENYALVDLGLTRVALLPRTEI
FIKPTLKFTQVININFTGEFMILNINPLNNQIVVSMNKVHILRRWERIKQ
MDFLNMIIYGRLKESLPKGRIIAFEGLKLFAPNSHISKYYRRKKQKDIFL
PMKFLELKESIHTVSISLKLAFLRKQHSVFKTGSIYIGCITSITYFGIFL
NIFGVKCLLHISELSNRKISKIDLFFSIGDELRVKIIYKNVEEGRIAASI
KRL*
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mRNA from alignment at H-elongata_contig186949:456..1217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186949.5092.1 ID=mRNA_H-elongata_contig186949.5092.1|Name=mRNA_H-elongata_contig186949.5092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=762bp|location=Sequence derived from alignment at H-elongata_contig186949:456..1217- (Himanthalia elongata Himel1 dioecious)
TTCAATAAATTTGCTGAATGCTTAGCAAAATATATTTATAAATTAAAAAA GTATGATATTCTTGCGGGAATTGTTATCGGATTAGAAGAGAATTATGCAT TAGTAGATTTGGGTTTAACTAGAGTAGCTTTATTACCAAGAACAGAAATA TTTATAAAACCAACTTTAAAATTCACTCAAGTAATAAATATTAATTTTAC TGGCGAATTTATGATTCTGAATATAAATCCGTTAAACAATCAAATTGTTG TATCCATGAATAAGGTACATATTTTACGTCGGTGGGAAAGAATAAAGCAA ATGGATTTTTTGAATATGATTATTTATGGACGATTAAAAGAATCTTTACC CAAAGGTAGAATTATTGCATTTGAAGGACTAAAACTGTTTGCTCCCAATT CTCATATCTCTAAATATTATCGACGTAAAAAACAAAAAGATATTTTTTTA CCTATGAAGTTTCTTGAATTAAAAGAAAGTATACACACAGTTAGTATTAG TTTAAAATTAGCCTTCTTAAGAAAACAACATAGTGTTTTCAAAACAGGTT CCATTTATATTGGTTGTATAACTTCAATTACATATTTTGGGATTTTTTTA AATATTTTTGGAGTCAAATGTTTATTGCATATATCCGAACTCTCTAATAG AAAAATTAGTAAAATAGATCTATTTTTTAGTATTGGTGATGAACTTAGAG TAAAAATAATTTATAAAAATGTAGAGGAAGGGAGAATTGCTGCTTCGATT AAGCGATTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig186949:456..1217-

>mRNA_H-elongata_contig186949.5092.1 ID=mRNA_H-elongata_contig186949.5092.1|Name=mRNA_H-elongata_contig186949.5092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig186949:456..1217- (Himanthalia elongata Himel1 dioecious)
TTCAATAAATTTGCTGAATGCTTAGCAAAATATATTTATAAATTAAAAAA
GTATGATATTCTTGCGGGAATTGTTATCGGATTAGAAGAGAATTATGCAT
TAGTAGATTTGGGTTTAACTAGAGTAGCTTTATTACCAAGAACAGAAATA
TTTATAAAACCAACTTTAAAATTCACTCAAGTAATAAATATTAATTTTAC
TGGCGAATTTATGATTCTGAATATAAATCCGTTAAACAATCAAATTGTTG
TATCCATGAATAAGGTACATATTTTACGTCGGTGGGAAAGAATAAAGCAA
ATGGATTTTTTGAATATGATTATTTATGGACGATTAAAAGAATCTTTACC
CAAAGGTAGAATTATTGCATTTGAAGGACTAAAACTGTTTGCTCCCAATT
CTCATATCTCTAAATATTATCGACGTAAAAAACAAAAAGATATTTTTTTA
CCTATGAAGTTTCTTGAATTAAAAGAAAGTATACACACAGTTAGTATTAG
TTTAAAATTAGCCTTCTTAAGAAAACAACATAGTGTTTTCAAAACAGGTT
CCATTTATATTGGTTGTATAACTTCAATTACATATTTTGGGATTTTTTTA
AATATTTTTGGAGTCAAATGTTTATTGCATATATCCGAACTCTCTAATAG
AAAAATTAGTAAAATAGATCTATTTTTTAGTATTGGTGATGAACTTAGAG
TAAAAATAATTTATAAAAATGTAGAGGAAGGGAGAATTGCTGCTTCGATT
AAGCGATTATAATTCAATAAATTTGCTGAATGCTTAGCAAAATATATTTA
TAAATTAAAAAAGTATGATATTCTTGCGGGAATTGTTATCGGATTAGAAG
AGAATTATGCATTAGTAGATTTGGGTTTAACTAGAGTAGCTTTATTACCA
AGAACAGAAATATTTATAAAACCAACTTTAAAATTCACTCAAGTAATAAA
TATTAATTTTACTGGCGAATTTATGATTCTGAATATAAATCCGTTAAACA
ATCAAATTGTTGTATCCATGAATAAGGTACATATTTTACGTCGGTGGGAA
AGAATAAAGCAAATGGATTTTTTGAATATGATTATTTATGGACGATTAAA
AGAATCTTTACCCAAAGGTAGAATTATTGCATTTGAAGGACTAAAACTGT
TTGCTCCCAATTCTCATATCTCTAAATATTATCGACGTAAAAAACAAAAA
GATATTTTTTTACCTATGAAGTTTCTTGAATTAAAAGAAAGTATACACAC
AGTTAGTATTAGTTTAAAATTAGCCTTCTTAAGAAAACAACATAGTGTTT
TCAAAACAGGTTCCATTTATATTGGTTGTATAACTTCAATTACATATTTT
GGGATTTTTTTAAATATTTTTGGAGTCAAATGTTTATTGCATATATCCGA
ACTCTCTAATAGAAAAATTAGTAAAATAGATCTATTTTTTAGTATTGGTG
ATGAACTTAGAGTAAAAATAATTTATAAAAATGTAGAGGAAGGGAGAATT
GCTGCTTCGATTAAGCGATTATAA
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