mRNA_H-elongata_contig186579.5081.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186579.5081.1
Unique NamemRNA_H-elongata_contig186579.5081.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: E1ZHZ8_CHLVA (J domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHZ8_CHLVA)

HSP 1 Score: 51.2 bits (121), Expect = 2.110e-7
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    7 KEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNPVRPAVA 138
            +E A ++LGL  G   TE  IKKAYRK+AL  HPDKNP  PA A
Sbjct:    2 EENAYQLLGLEQGPTATEAEIKKAYRKLALVKHPDKNPDNPAAA 45          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: T0T3G9_9PROT (DnaJ domain protein n=1 Tax=Bacteriovorax sp. DB6_IX TaxID=1353530 RepID=T0T3G9_9PROT)

HSP 1 Score: 49.3 bits (116), Expect = 2.090e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    1 MSKEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNP 120
            MSK    EVLG+G G +K E  IKKAYRK+A++ HPD+NP
Sbjct:    1 MSKRDYYEVLGVGKGADKNE--IKKAYRKLAMKYHPDRNP 38          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: UPI001A9153AD (molecular chaperone DnaJ n=1 Tax=Alkalibacter sp. ES005 TaxID=2815577 RepID=UPI001A9153AD)

HSP 1 Score: 50.1 bits (118), Expect = 8.540e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    1 MSKEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNP 120
            MSK    EVLGLG G   +EE IKKAYRK+A++ HPD+NP
Sbjct:    1 MSKRDYYEVLGLGKGA--SEEEIKKAYRKLAMKYHPDRNP 38          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: A0A2P6TMJ5_CHLSO (DnaJ-like protein subfamily C member 17 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TMJ5_CHLSO)

HSP 1 Score: 48.9 bits (115), Expect = 2.180e-5
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   10 EQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNPVRPAVA 138
            E A ++LGL  G   TE  IKKAYRK+AL  HPDKNP  P  A
Sbjct:    2 ENAYQLLGLEQGPAATEAEIKKAYRKLALVKHPDKNPDNPRAA 44          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: A0A7S4DE88_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE88_HETAK)

HSP 1 Score: 47.4 bits (111), Expect = 2.240e-5
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 MSKEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNPVRP 129
            M  E+A E+LG+ DG   +EE IKKAYRK+AL+ HPDKN   P
Sbjct:   40 MKLEEAQEILGVEDGV--SEEDIKKAYRKLALQYHPDKNKDNP 80          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: A0A2P6VE42_9CHLO (Putative boron transporter 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VE42_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 3.010e-5
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    7 KEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNPVRPAVA 138
            +E A E+LGL  G   TE  IKKAYR++AL  HPDKNP  P  A
Sbjct:    2 EENAYELLGLEQGPAATEADIKKAYRRLALIKHPDKNPDNPKAA 45          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: A0A257VC09_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=Acidobacteriia bacterium 12-62-4 TaxID=1970571 RepID=A0A257VC09_9BACT)

HSP 1 Score: 45.8 bits (107), Expect = 3.260e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1
Query:    1 MSKEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNP 120
            MSK    EVLGL  G +  E A+K AYRK+AL+ HPD+NP
Sbjct:    1 MSKRDYYEVLGLSKGAD--EAALKSAYRKLALQYHPDRNP 38          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: A0A087SJ56_AUXPR (DnaJ-like protein subfamily C member 17 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SJ56_AUXPR)

HSP 1 Score: 48.1 bits (113), Expect = 4.000e-5
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   16 ACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNPVRPAVA 138
            A ++LGL +G E T+  IKKAYR++AL+ HPDKNP  P  A
Sbjct:    5 AYKLLGLENGPEATDVEIKKAYRRLALQKHPDKNPDNPNAA 45          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: A0A1D2A8M4_AUXPR (J domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A8M4_AUXPR)

HSP 1 Score: 48.1 bits (113), Expect = 4.100e-5
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   16 ACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNPVRPAVA 138
            A ++LGL +G E T+  IKKAYR++AL+ HPDKNP  P  A
Sbjct:    5 AYKLLGLENGPEATDVEIKKAYRRLALQKHPDKNPDNPNAA 45          
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Match: A0A349DMY4_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=Microscillaceae bacterium TaxID=2053581 RepID=A0A349DMY4_9BACT)

HSP 1 Score: 44.7 bits (104), Expect = 6.130e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query:    1 MSKEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNP 120
            M+K    EVLG+G    K E  +KKAYRK+A++ HPDKNP
Sbjct:    1 MAKRDYYEVLGVGRSASKDE--LKKAYRKLAIKHHPDKNP 38          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186579.5081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
E1ZHZ8_CHLVA2.110e-759.09J domain-containing protein (Fragment) n=1 Tax=Chl... [more]
T0T3G9_9PROT2.090e-660.00DnaJ domain protein n=1 Tax=Bacteriovorax sp. DB6_... [more]
UPI001A9153AD8.540e-662.50molecular chaperone DnaJ n=1 Tax=Alkalibacter sp. ... [more]
A0A2P6TMJ5_CHLSO2.180e-558.14DnaJ-like protein subfamily C member 17 n=1 Tax=Ch... [more]
A0A7S4DE88_HETAK2.240e-558.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2P6VE42_9CHLO3.010e-556.82Putative boron transporter 2 n=1 Tax=Micractinium ... [more]
A0A257VC09_9BACT3.260e-557.50Molecular chaperone DnaJ (Fragment) n=1 Tax=Acidob... [more]
A0A087SJ56_AUXPR4.000e-556.10DnaJ-like protein subfamily C member 17 n=1 Tax=Au... [more]
A0A1D2A8M4_AUXPR4.100e-556.10J domain-containing protein n=1 Tax=Auxenochlorell... [more]
A0A349DMY4_9BACT6.130e-555.00Molecular chaperone DnaJ (Fragment) n=1 Tax=Micros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186579contigH-elongata_contig186579:545..682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.8247035-CDS-H-elongata_contig186579:544..6821622930067.8247035-CDS-H-elongata_contig186579:544..682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186579 545..682 -
1691679268.476847-CDS-H-elongata_contig186579:544..6821691679268.476847-CDS-H-elongata_contig186579:544..682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186579 545..682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186579.5081.1prot_H-elongata_contig186579.5081.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186579 545..682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186579.5081.1

>prot_H-elongata_contig186579.5081.1 ID=prot_H-elongata_contig186579.5081.1|Name=mRNA_H-elongata_contig186579.5081.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MSKEQACEVLGLGDGGEKTEEAIKKAYRKIALETHPDKNPVRPAVA
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mRNA from alignment at H-elongata_contig186579:545..682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186579.5081.1 ID=mRNA_H-elongata_contig186579.5081.1|Name=mRNA_H-elongata_contig186579.5081.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig186579:545..682- (Himanthalia elongata Himel1 dioecious)
ATGTCAAAAGAGCAGGCCTGTGAGGTGTTAGGTTTAGGAGATGGTGGGGA GAAGACCGAGGAGGCTATCAAGAAGGCTTACAGAAAGATAGCTCTAGAGA CGCACCCCGACAAGAATCCGGTGAGGCCGGCTGTGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig186579:545..682-

>mRNA_H-elongata_contig186579.5081.1 ID=mRNA_H-elongata_contig186579.5081.1|Name=mRNA_H-elongata_contig186579.5081.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig186579:545..682- (Himanthalia elongata Himel1 dioecious)
ATGTCAAAAGAGCAGGCCTGTGAGGTGTTAGGTTTAGGAGATGGTGGGGA
GAAGACCGAGGAGGCTATCAAGAAGGCTTACAGAAAGATAGCTCTAGAGA
CGCACCCCGACAAGAATCCGGTGAGGCCGGCTGTGGCGATGTCAAAAGAG
CAGGCCTGTGAGGTGTTAGGTTTAGGAGATGGTGGGGAGAAGACCGAGGA
GGCTATCAAGAAGGCTTACAGAAAGATAGCTCTAGAGACGCACCCCGACA
AGAATCCGGTGAGGCCGGCTGTGGCG
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