mRNA_H-elongata_contig186492.5078.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186492.5078.1
Unique NamemRNA_H-elongata_contig186492.5078.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: D8LN34_ECTSI (FAD dependent oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN34_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 8.850e-9
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAE 120
            AL SPSTGIVDSHAL  +LQGDAEA GA+V+LRT V GAE
Sbjct:  142 ALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAE 181
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BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A2D9I4T6_9PROT (FAD-dependent oxidoreductase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D9I4T6_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 8.850e-8
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIG 114
            ALLSPSTGI+DSHAL+QA QGDAE+CGA++   + V+G
Sbjct:  137 ALLSPSTGIIDSHALMQAYQGDAESCGAMIVCNSPVLG 174
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BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A6M7TTM8_RHILI (NAD(P)/FAD-dependent oxidoreductase n=5 Tax=Mesorhizobium TaxID=68287 RepID=A0A6M7TTM8_RHILI)

HSP 1 Score: 55.1 bits (131), Expect = 1.210e-7
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAEV 123
            ALLSPSTGIVDSHAL+ AL+GDAEA GA  AL T V+GA +
Sbjct:  137 ALLSPSTGIVDSHALMLALRGDAEAAGASFALLTTVVGAAI 177
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BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A6I6LHX2_PSEST (FAD-dependent oxidoreductase n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=A0A6I6LHX2_PSEST)

HSP 1 Score: 54.7 bits (130), Expect = 1.650e-7
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 LLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAEV 123
            LLSPSTGIVDSHAL+ ALQGDAEA GA++ALR  V   EV
Sbjct:  138 LLSPSTGIVDSHALMLALQGDAEAAGALLALRAPVTSIEV 177
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BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: UPI001F532CC6 (NAD(P)/FAD-dependent oxidoreductase n=3 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI001F532CC6)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAEVI 126
            AL SPSTGIVDSHAL+ ALQGDAE CGA++A  + V+G  V+
Sbjct:  139 ALHSPSTGIVDSHALMLALQGDAERCGAVLAFASPVLGGRVV 180
[Close]
BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A6H5JKE6_9PHAE (DAO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAE 120
            AL SPSTGIVDSHAL  +LQGDAEA GA+V+LRT V  AE
Sbjct:  119 ALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHWAE 158
[Close]
BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A537RM79_9PROT (NAD(P)/FAD-dependent oxidoreductase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RM79_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 2.120e-7
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAEV 123
            ALLSPSTGI+DSHAL+ A QG+AEA GAIV LRT V+   V
Sbjct:   67 ALLSPSTGIIDSHALMLAYQGEAEAAGAIVVLRTPVLSGRV 107
[Close]
BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A537UJK6_9PROT (NAD(P)/FAD-dependent oxidoreductase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UJK6_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 2.170e-7
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAEV 123
            ALLSPSTGI+DSHAL+ A QG+AEA GA VA RT V G  V
Sbjct:   82 ALLSPSTGIIDSHALMLAYQGEAEAAGAFVAFRTPVFGGHV 122
[Close]
BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A2E2E278_9PROT (FAD-dependent oxidoreductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2E278_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIG 114
            ALLSPSTGI+DSHAL+ A QGDAE+CGA++A  + V+G
Sbjct:  137 ALLSPSTGIIDSHALMLAYQGDAESCGAMIACNSPVLG 174
[Close]
BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Match: A0A4S4AB85_9RHOO (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Azoarcus rhizosphaerae TaxID=2565932 RepID=A0A4S4AB85_9RHOO)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAE 120
            AL SPSTGIVDSHAL+ AL GDAEA GA++ALRT V+G E
Sbjct:  137 ALHSPSTGIVDSHALMLALLGDAEAHGALLALRTPVLGGE 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186492.5078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN34_ECTSI8.850e-977.50FAD dependent oxidoreductase n=1 Tax=Ectocarpus si... [more]
A0A2D9I4T6_9PROT8.850e-868.42FAD-dependent oxidoreductase n=2 Tax=Rhodospirilla... [more]
A0A6M7TTM8_RHILI1.210e-773.17NAD(P)/FAD-dependent oxidoreductase n=5 Tax=Mesorh... [more]
A0A6I6LHX2_PSEST1.650e-775.00FAD-dependent oxidoreductase n=1 Tax=Pseudomonas s... [more]
UPI001F532CC61.660e-766.67NAD(P)/FAD-dependent oxidoreductase n=3 Tax=Calidi... [more]
A0A6H5JKE6_9PHAE1.660e-775.00DAO domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A537RM79_9PROT2.120e-770.73NAD(P)/FAD-dependent oxidoreductase (Fragment) n=1... [more]
A0A537UJK6_9PROT2.170e-770.73NAD(P)/FAD-dependent oxidoreductase (Fragment) n=1... [more]
A0A2E2E278_9PROT2.270e-768.42FAD-dependent oxidoreductase n=1 Tax=Rhodospirilla... [more]
A0A4S4AB85_9RHOO2.270e-775.00NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Azoarc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186492contigH-elongata_contig186492:943..1068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.6495173-CDS-H-elongata_contig186492:942..10681622930067.6495173-CDS-H-elongata_contig186492:942..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186492 943..1068 -
1691679268.425738-CDS-H-elongata_contig186492:942..10681691679268.425738-CDS-H-elongata_contig186492:942..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186492 943..1068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186492.5078.1prot_H-elongata_contig186492.5078.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186492 943..1068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186492.5078.1

>prot_H-elongata_contig186492.5078.1 ID=prot_H-elongata_contig186492.5078.1|Name=mRNA_H-elongata_contig186492.5078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
ALLSPSTGIVDSHALVQALQGDAEACGAIVALRTAVIGAEVI
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mRNA from alignment at H-elongata_contig186492:943..1068-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186492.5078.1 ID=mRNA_H-elongata_contig186492.5078.1|Name=mRNA_H-elongata_contig186492.5078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig186492:943..1068- (Himanthalia elongata Himel1 dioecious)
GCGCTGCTTTCCCCCAGCACCGGGATCGTGGACAGCCACGCCCTCGTGCA
GGCGCTCCAGGGTGACGCCGAGGCGTGTGGCGCCATAGTAGCTCTCCGCA
CGGCCGTGATCGGTGCCGAGGTAATC
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Coding sequence (CDS) from alignment at H-elongata_contig186492:943..1068-

>mRNA_H-elongata_contig186492.5078.1 ID=mRNA_H-elongata_contig186492.5078.1|Name=mRNA_H-elongata_contig186492.5078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig186492:943..1068- (Himanthalia elongata Himel1 dioecious)
GCGCTGCTTTCCCCCAGCACCGGGATCGTGGACAGCCACGCCCTCGTGCA
GGCGCTCCAGGGTGACGCCGAGGCGTGTGGCGCCATAGTAGCTCTCCGCA
CGGCCGTGATCGGTGCCGAGGTAATCGCGCTGCTTTCCCCCAGCACCGGG
ATCGTGGACAGCCACGCCCTCGTGCAGGCGCTCCAGGGTGACGCCGAGGC
GTGTGGCGCCATAGTAGCTCTCCGCACGGCCGTGATCGGTGCCGAGGTAA
TC
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