mRNA_H-elongata_contig186474.5076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186474.5076.1
Unique NamemRNA_H-elongata_contig186474.5076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: A0A6H5KFQ5_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFQ5_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.040e-37
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    4 GILSKDTLSVGGLTSEATFGEISTRSLDGCATVDGVLGMGLSSSGDNQNVFETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHYEGMF 288
            GILS DTLS+GGLT+ ATFGE+STRS+DGC T+DG++GMG+ SS D Q+VFE LV+A VVDVPIFSF+MGNIDT +PTG LTLGGVNQTHYEG  
Sbjct:  161 GILSVDTLSIGGLTTTATFGEMSTRSMDGCTTMDGIMGMGVPSS-DKQSVFEDLVEANVVDVPIFSFFMGNIDTGSPTGFLTLGGVNQTHYEGCL 254          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: A0A6H5KFF6_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.790e-24
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 TGILSKDTLSVGGLTSEATFGEISTRSLDGCATVDGVLGMGLSSSGDNQNVFETLVDAGVVDVPIFSFYMGNID-TDTPTGVLTLGGVNQTHYEGMF 288
            TG LS D L++GG+++  TF E++   L+GC  VDG +GMGL++  +  N FE +V+AGVV +PIFSF++GN+D ++ P GVLTLGGVNQTHYEG  
Sbjct:  139 TGFLSNDVLTMGGMSTAVTFAEMTEAELEGCTEVDGEMGMGLTND-EETNAFEDMVEAGVVGLPIFSFFLGNMDASEGPHGVLTLGGVNQTHYEGCL 234          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: A0A423SAG9_PENVA (Cathepsin D-like protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423SAG9_PENVA)

HSP 1 Score: 65.5 bits (158), Expect = 3.020e-10
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    4 GILSKDTLSVGGLT-SEATFGEISTRSLDGCATV----DGVLGMGLS--SSGDNQNVFETLVDAGVVDVPIFSFYMGNIDTDTPT--------GVLTLGGVNQTHYEGMF 288
            G LS D++SVGG+T ++ TF E +     G A V    DG+LGMG +  S      VF+T++D GVVD P+FSFY+  I +D+          G L LGG +  HYEG F
Sbjct:  150 GFLSSDSVSVGGVTVTDQTFAEATQE--PGLAFVAGAFDGILGMGFTEISVMGIPTVFDTMLDQGVVDQPVFSFYLNQIISDSDANGFSAELGGELVLGGSDPNHYEGEF 257          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: UPI000F68A7A6 (lysosomal aspartic protease-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI000F68A7A6)

HSP 1 Score: 65.1 bits (157), Expect = 4.140e-10
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    4 GILSKDTLSVGGLT-SEATFGEISTRSLDGCATV----DGVLGMGLS--SSGDNQNVFETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHYEGMF 288
            G LS D++SVGG+T ++ TF E +     G A V    DG+LGMG +  S      VF+T++D GVVD P+FSFY+ +       G L LGG +  HYEG F
Sbjct:  160 GFLSSDSVSVGGVTVTDQTFAEATQE--PGLAFVAGAFDGILGMGFTEISVMGIPTVFDTMLDQGVVDQPVFSFYLNHDMNGELGGELVLGGSDPNHYEGEF 259          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: UPI001C70C19C (lysosomal aspartic protease-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70C19C)

HSP 1 Score: 61.6 bits (148), Expect = 6.730e-9
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    4 GILSKDTLSVGGLT-SEATFGEISTRSLDGCATV----DGVLGMGLSSSG--DNQNVFETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHYEGMF 288
            G LS D ++VGGLT ++ TF E +     G A V    DG++GMG +         VF+T+V  GVVD P+FSFY+ +       G L LGG +  HYEG F
Sbjct:  132 GFLSSDNVAVGGLTVTDQTFAEATQE--PGLAFVAGAFDGIMGMGFTEISVLGIPTVFDTMVAQGVVDQPVFSFYLNHDMNGELGGELVLGGSDPNHYEGEF 231          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: UPI001E67340F (lysosomal aspartic protease-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E67340F)

HSP 1 Score: 60.1 bits (144), Expect = 2.360e-8
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    1 TGILSKDTLSVGGLTS-EATFGEISTRSLDGCATV----DGVLGMG---LSSSGDNQNVFETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHYEGMF 288
            TG LS DT++VG L   + TF E +     G A +    DG+LGMG   +S  G    VF+ +V  GVVD PIFSF++ +  T+T  G L LGG +  HYEG F
Sbjct:  132 TGFLSSDTVAVGDLAVVDQTFAEATHE--PGIAFLAGVFDGILGMGFVEISVMGI-PTVFDNMVAQGVVDEPIFSFFLNHDMTETLGGELVLGGSDPNHYEGEF 232          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: Q86ZP8_PARBR (Aspartyl proteinase n=5 Tax=Paracoccidioides brasiliensis TaxID=121759 RepID=Q86ZP8_PARBR)

HSP 1 Score: 58.9 bits (141), Expect = 6.100e-8
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    4 GILSKDTLSVGGLTSEAT-FGEISTRSLDGCATV----DGVLGMGLSSSGDNQNV--FETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHYEG 282
            G +S+D L +G +T E+  F E ++    G A      DG+LG+G  +   N+ V  F  +V+ G++D P+FSFY+GN DTD      T GG+++ HY G
Sbjct:  154 GFVSQDVLRIGDMTVESQDFAEATSE--PGLAFAFGRFDGILGLGYDTISVNRIVPTFYLMVNQGLLDEPVFSFYLGNSDTDGDDSEATFGGIDKDHYTG 251          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: UPI001FB3050C (napsin-A-like isoform X2 n=1 Tax=Sciurus carolinensis TaxID=30640 RepID=UPI001FB3050C)

HSP 1 Score: 58.5 bits (140), Expect = 8.170e-8
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    4 GILSKDTLSVGGLT-SEATFGEI--STRSLDGCATVDGVLGMG--LSSSGDNQNVFETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHY 276
            GILSKD L++GG+  +  TFGE       +   A  DG+LG+G  + + G  Q   +TLV+ G++D P+FSFY+         G L LGG + THY
Sbjct:  145 GILSKDNLTIGGIKGASVTFGEALWEPSLVFTFAHFDGILGLGFPILAVGGVQPPLDTLVEQGLLDRPVFSFYLNRDSEGADGGELVLGGSDPTHY 240          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: A0A8D2JRS5_SCIVU (Napsin A aspartic peptidase n=3 Tax=Sciurus vulgaris TaxID=55149 RepID=A0A8D2JRS5_SCIVU)

HSP 1 Score: 58.5 bits (140), Expect = 8.440e-8
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    4 GILSKDTLSVGGLT-SEATFGEI--STRSLDGCATVDGVLGMG--LSSSGDNQNVFETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHY 276
            GILSKD L++GG+  +  TFGE       +   A  DG+LG+G  + + G  Q   +TLV+ G++D P+FSFY+         G L LGG + THY
Sbjct:  146 GILSKDNLTIGGIKGASVTFGEALWEPSLVFTFAHFDGILGLGFPILAVGGVQPPLDTLVEQGLLDRPVFSFYLNRDSEGADGGELVLGGSDPTHY 241          
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Match: A0A1U7LK19_NEOID (Vacuolar protease A n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LK19_NEOID)

HSP 1 Score: 57.8 bits (138), Expect = 1.550e-7
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  103 DGVLGMGLSSSGDNQNV--FETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHYEGMFM 291
            DG+LG+G  +   NQ V  F T++D G++D P+FSFY+G+ D+ +  G++T GG+  + Y G  +
Sbjct:  188 DGILGLGYDTISVNQIVPPFYTMIDQGLLDQPVFSFYLGDKDSGSDGGIVTFGGIEPSLYTGKMI 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186474.5076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFQ5_9PHAE5.040e-3774.74Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KFF6_9PHAE2.790e-2454.64Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A423SAG9_PENVA3.020e-1042.73Cathepsin D-like protein n=1 Tax=Penaeus vannamei ... [more]
UPI000F68A7A64.140e-1044.12lysosomal aspartic protease-like n=3 Tax=Penaeus T... [more]
UPI001C70C19C6.730e-942.16lysosomal aspartic protease-like n=1 Tax=Penaeus j... [more]
UPI001E67340F2.360e-844.23lysosomal aspartic protease-like n=1 Tax=Procambar... [more]
Q86ZP8_PARBR6.100e-838.00Aspartyl proteinase n=5 Tax=Paracoccidioides brasi... [more]
UPI001FB3050C8.170e-840.63napsin-A-like isoform X2 n=1 Tax=Sciurus carolinen... [more]
A0A8D2JRS5_SCIVU8.440e-840.63Napsin A aspartic peptidase n=3 Tax=Sciurus vulgar... [more]
A0A1U7LK19_NEOID1.550e-740.00Vacuolar protease A n=1 Tax=Neolecta irregularis (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186474contigH-elongata_contig186474:478..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue7.6e-33
Seed eggNOG ortholog2880.D7FJG5
KEGG koko:K01378,ko:K01379,ko:K06002,ko:K08245
KEGG Pathwayko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05152
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.1,3.4.23.4,3.4.23.40,3.4.23.5
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionaspartyl protease
Ec32 orthologEc-14_006250.1
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.361832-CDS-H-elongata_contig186474:477..6481622930067.361832-CDS-H-elongata_contig186474:477..648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186474 478..648 +
1691679268.294748-CDS-H-elongata_contig186474:477..6481691679268.294748-CDS-H-elongata_contig186474:477..648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186474 478..648 +
1622930067.4210715-CDS-H-elongata_contig186474:1020..11611622930067.4210715-CDS-H-elongata_contig186474:1020..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186474 1021..1161 +
1691679268.3053024-CDS-H-elongata_contig186474:1020..11611691679268.3053024-CDS-H-elongata_contig186474:1020..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186474 1021..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186474.5076.1prot_H-elongata_contig186474.5076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186474 478..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186474.5076.1

>prot_H-elongata_contig186474.5076.1 ID=prot_H-elongata_contig186474.5076.1|Name=mRNA_H-elongata_contig186474.5076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
TGILSKDTLSVGGLTSEATFGEISTRSLDGCATVDGVLGMGLSSSGDNQN
VFETLVDAGVVDVPIFSFYMGNIDTDTPTGVLTLGGVNQTHYEGMFMSEV
GGG*
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mRNA from alignment at H-elongata_contig186474:478..1161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186474.5076.1 ID=mRNA_H-elongata_contig186474.5076.1|Name=mRNA_H-elongata_contig186474.5076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=684bp|location=Sequence derived from alignment at H-elongata_contig186474:478..1161+ (Himanthalia elongata Himel1 dioecious)
ACAGGGATACTCTCAAAGGACACGCTGAGCGTGGGAGGGCTAACATCGGA GGCGACCTTCGGGGAGATCTCCACGCGCTCGCTGGACGGTTGCGCGACCG TGGACGGTGTCTTGGGGATGGGCCTCTCCAGCTCCGGCGACAACCAAAAC GTCTTCGAAACGCTCGTCGATGTGAGCGGCCTCTGTGTGCAGCCCCGAGT GTTGTCCACTGTTTGTCGTTCCCCGCTTCCCTCACAAAACCCCTTCTCGC CGTCCCCTTGAGCGTGGCCAGCGGTGATGACATAAACTGTTGGCCGCCGA GCCGATAACTCGCTGTCGCTTTTCGCGATTCGGCGGATGGTACGCGCGTA GCATTTTGAGATTAAGAGTAGCGGTTTATCGTGTCTCTCAAGGGGCAGCT TTGTTGGTTGGCGCTCGTCCTTCTTTTTCTTTTTTACGTGCACGCCTCTC CTTGACGTCAAAACCTCTATTTTTCTTTCACGCACGCACTCCTACCTTTG AAGCTTTTGAAACCCGCGCTTGCGTGCACTCGCCCACCCCCAGGCTGGAG TCGTGGACGTTCCGATATTCTCGTTCTACATGGGCAACATTGACACCGAC ACGCCGACCGGTGTGCTCACCCTCGGAGGCGTTAATCAGACTCACTACGA AGGTATGTTTATGTCGGAGGTAGGGGGGGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig186474:478..1161+

>mRNA_H-elongata_contig186474.5076.1 ID=mRNA_H-elongata_contig186474.5076.1|Name=mRNA_H-elongata_contig186474.5076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig186474:478..1161+ (Himanthalia elongata Himel1 dioecious)
ACAGGGATACTCTCAAAGGACACGCTGAGCGTGGGAGGGCTAACATCGGA
GGCGACCTTCGGGGAGATCTCCACGCGCTCGCTGGACGGTTGCGCGACCG
TGGACGGTGTCTTGGGGATGGGCCTCTCCAGCTCCGGCGACAACCAAAAC
GTCTTCGAAACGCTCGTCGATACAGGGATACTCTCAAAGGACACGCTGAG
CGTGGGAGGGCTAACATCGGAGGCGACCTTCGGGGAGATCTCCACGCGCT
CGCTGGACGGTTGCGCGACCGTGGACGGTGTCTTGGGGATGGGCCTCTCC
AGCTCCGGCGACAACCAAAACGTCTTCGAAACGCTCGTCGATGCTGGAGT
CGTGGACGTTCCGATATTCTCGTTCTACATGGGCAACATTGACACCGACA
CGCCGACCGGTGTGCTCACCCTCGGAGGCGTTAATCAGACTCACTACGAA
GGTATGTTTATGTCGGAGGTAGGGGGGGGTTAGGCTGGAGTCGTGGACGT
TCCGATATTCTCGTTCTACATGGGCAACATTGACACCGACACGCCGACCG
GTGTGCTCACCCTCGGAGGCGTTAATCAGACTCACTACGAAGGTATGTTT
ATGTCGGAGGTAGGGGGGGGTTAG
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