mRNA_H-elongata_contig186420.5074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186420.5074.1
Unique NamemRNA_H-elongata_contig186420.5074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186420.5074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186420contigH-elongata_contig186420:180..953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size774
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186420.5074.1prot_H-elongata_contig186420.5074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186420 433..822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.0237281-UTR-H-elongata_contig186420:179..4321622930067.0237281-UTR-H-elongata_contig186420:179..432Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186420 180..432 +
1691679268.1515176-UTR-H-elongata_contig186420:179..4321691679268.1515176-UTR-H-elongata_contig186420:179..432Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186420 180..432 +
1622930067.0491545-UTR-H-elongata_contig186420:822..9531622930067.0491545-UTR-H-elongata_contig186420:822..953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186420 823..953 +
1691679268.1686568-UTR-H-elongata_contig186420:822..9531691679268.1686568-UTR-H-elongata_contig186420:822..953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186420 823..953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.0381417-CDS-H-elongata_contig186420:432..8221622930067.0381417-CDS-H-elongata_contig186420:432..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186420 433..822 +
1691679268.1589763-CDS-H-elongata_contig186420:432..8221691679268.1589763-CDS-H-elongata_contig186420:432..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186420 433..822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186420.5074.1

>prot_H-elongata_contig186420.5074.1 ID=prot_H-elongata_contig186420.5074.1|Name=mRNA_H-elongata_contig186420.5074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MGNLAVMGRIRNLANTRLSEVYYVWGNHGGHGLRGGAGNKKSGWECLLGD
LKSFRYQHRPLDDCSPGQGGMAQDGGTRGGTFHEELDRCRESKGWTTACT
SIFEHGGEDQQKDSPKQARAHAVLLVIVD*
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mRNA from alignment at H-elongata_contig186420:180..953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186420.5074.1 ID=mRNA_H-elongata_contig186420.5074.1|Name=mRNA_H-elongata_contig186420.5074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig186420:180..953+ (Himanthalia elongata Himel1 dioecious)
CAACAACAAACAGTCTTCATTTATTTATTTATTTGTTTTTAAAATAAATT
AATCACAAAAATCAGACAAATTTAAGTGGTGACGTCATTTGGGGGAGTGA
GTAGATAAAGTTCAGCCATCACCATTGATTGTTGGTTGGCGACGTGGTGT
TGGAAACCTGGACTCGCATCGCAGTAAAACATGTTAGCGCGTGGAGAAGC
GGGTCAATCAATCCATTGATCCCTTACTACTGTAGGGCTACACAACCGGC
GGCATGGGGAACCTTGCAGTGATGGGTAGGATTCGCAACCTAGCAAACAC
GAGACTGTCGGAAGTGTATTATGTTTGGGGAAATCATGGGGGGCACGGGC
TGCGTGGGGGTGCAGGAAACAAGAAGAGTGGATGGGAGTGCCTTTTAGGT
GACCTCAAAAGCTTTCGATATCAACACCGACCATTGGACGATTGCAGCCC
AGGACAAGGGGGAATGGCGCAAGACGGCGGAACAAGGGGCGGGACGTTTC
ATGAAGAATTGGATCGCTGCAGAGAAAGTAAGGGCTGGACTACGGCATGC
ACTAGCATATTCGAACATGGCGGGGAGGACCAACAAAAGGATAGCCCGAA
GCAAGCCCGTGCTCATGCTGTTTTGCTTGTCATAGTTGACTAGTAGTCAA
GAGTGGCGCGAACTTATCCTCTGGGCATTTGTTTTTGCTTGTCGATGTGA
TTTTGCCCTTCTCTGGTTTTACGGGATTTTTTGTTTTTTTTGTTATCGTT
CTTTTTCTTTTTCATTAAACCCGT
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Coding sequence (CDS) from alignment at H-elongata_contig186420:180..953+

>mRNA_H-elongata_contig186420.5074.1 ID=mRNA_H-elongata_contig186420.5074.1|Name=mRNA_H-elongata_contig186420.5074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig186420:180..953+ (Himanthalia elongata Himel1 dioecious)
ATGGGGAACCTTGCAGTGATGGGTAGGATTCGCAACCTAGCAAACACGAG
ACTGTCGGAAGTGTATTATGTTTGGGGAAATCATGGGGGGCACGGGCTGC
GTGGGGGTGCAGGAAACAAGAAGAGTGGATGGGAGTGCCTTTTAGGTGAC
CTCAAAAGCTTTCGATATCAACACCGACCATTGGACGATTGCAGCCCAGG
ACAAGGGGGAATGGCGCAAGACGGCGGAACAAGGGGCGGGACGTTTCATG
AAGAATTGGATCGCTGCAGAGAAAGTAAGGGCTGGACTACGGCATGCACT
AGCATATTCGAACATGGCGGGGAGGACCAACAAAAGGATAGCCCGAAGCA
AGCCCGTGCTCATGCTGTTTTGCTTGTCATAGTTGACTAGATGGGGAACC
TTGCAGTGATGGGTAGGATTCGCAACCTAGCAAACACGAGACTGTCGGAA
GTGTATTATGTTTGGGGAAATCATGGGGGGCACGGGCTGCGTGGGGGTGC
AGGAAACAAGAAGAGTGGATGGGAGTGCCTTTTAGGTGACCTCAAAAGCT
TTCGATATCAACACCGACCATTGGACGATTGCAGCCCAGGACAAGGGGGA
ATGGCGCAAGACGGCGGAACAAGGGGCGGGACGTTTCATGAAGAATTGGA
TCGCTGCAGAGAAAGTAAGGGCTGGACTACGGCATGCACTAGCATATTCG
AACATGGCGGGGAGGACCAACAAAAGGATAGCCCGAAGCAAGCCCGTGCT
CATGCTGTTTTGCTTGTCATAGTTGACTAG
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