mRNA_H-elongata_contig186411.5072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186411.5072.1
Unique NamemRNA_H-elongata_contig186411.5072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig186411.5072.1 vs. uniprot
Match: A0A6H5KWN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.390e-13
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 DAFVAKLNGSDGSLAWGWQRGSE-GNDYVNAVAVDARGGVYACGAA 135
            DAFVAKL+G++G+  WGWQ GSE GNDY NAVAVD+ G VYACGAA
Sbjct:  304 DAFVAKLDGANGTHVWGWQGGSEVGNDYANAVAVDSNGDVYACGAA 349
[Close]
BLAST of mRNA_H-elongata_contig186411.5072.1 vs. uniprot
Match: A0A367Z2Q4_9CHLR (Alkaline phosphatase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A367Z2Q4_9CHLR)

HSP 1 Score: 47.4 bits (111), Expect = 7.690e-5
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 DAFVAKLNGSDGSLAWGWQRGSEGNDYVNAVAVDARGGVYACG 129
            DAFVAKLN ++G+L W    G  G+DY N +A+D  G VY  G
Sbjct:  378 DAFVAKLNATNGALLWHAFLGGAGDDYGNGIALDVSGNVYVAG 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186411.5072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWN4_9PHAE7.390e-1373.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A367Z2Q4_9CHLR7.690e-551.16Alkaline phosphatase n=1 Tax=Anaerolineae bacteriu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186411contigH-elongata_contig186411:193..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.823675-CDS-H-elongata_contig186411:192..3301622930066.823675-CDS-H-elongata_contig186411:192..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186411 193..330 -
1691679268.1241336-CDS-H-elongata_contig186411:192..3301691679268.1241336-CDS-H-elongata_contig186411:192..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186411 193..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186411.5072.1prot_H-elongata_contig186411.5072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186411 193..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186411.5072.1

>prot_H-elongata_contig186411.5072.1 ID=prot_H-elongata_contig186411.5072.1|Name=mRNA_H-elongata_contig186411.5072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
DAFVAKLNGSDGSLAWGWQRGSEGNDYVNAVAVDARGGVYACGAAT
back to top

mRNA from alignment at H-elongata_contig186411:193..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186411.5072.1 ID=mRNA_H-elongata_contig186411.5072.1|Name=mRNA_H-elongata_contig186411.5072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig186411:193..330- (Himanthalia elongata Himel1 dioecious)
GACGCGTTCGTCGCCAAGCTCAATGGCAGCGATGGCAGCCTAGCTTGGGG
ATGGCAGCGGGGCTCCGAGGGCAACGACTATGTTAATGCCGTTGCAGTGG
ACGCCAGGGGTGGTGTGTATGCCTGCGGCGCGGCCACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig186411:193..330-

>mRNA_H-elongata_contig186411.5072.1 ID=mRNA_H-elongata_contig186411.5072.1|Name=mRNA_H-elongata_contig186411.5072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig186411:193..330- (Himanthalia elongata Himel1 dioecious)
GACGCGTTCGTCGCCAAGCTCAATGGCAGCGATGGCAGCCTAGCTTGGGG
ATGGCAGCGGGGCTCCGAGGGCAACGACTATGTTAATGCCGTTGCAGTGG
ACGCCAGGGGTGGTGTGTATGCCTGCGGCGCGGCCACGGACGCGTTCGTC
GCCAAGCTCAATGGCAGCGATGGCAGCCTAGCTTGGGGATGGCAGCGGGG
CTCCGAGGGCAACGACTATGTTAATGCCGTTGCAGTGGACGCCAGGGGTG
GTGTGTATGCCTGCGGCGCGGCCACG
back to top