mRNA_H-elongata_contig186297.5066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186297.5066.1
Unique NamemRNA_H-elongata_contig186297.5066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: D7G7B4_ECTSI (Cobalamin synthesis protein, P47K n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.430e-23
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    4 LLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            LL+ QVEF++VILLNK+DL  EE ++ LE ++RRLNPTARV RT+ S + LAEVLGTGEFD+EEAS AAGW++
Sbjct:  391 LLMSQVEFANVILLNKSDLATEEDMAALEGLVRRLNPTARVERTVSSAVGLAEVLGTGEFDLEEASKAAGWLR 463          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: A0A6H5JJT0_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.240e-21
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1
Query:   19 VEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            VEF++VILLNK+DL  EE ++ LE ++RRLNPTARV RT+ S + L EVLGTGEFD+EEAS AAGW++
Sbjct:  393 VEFANVILLNKSDLATEEDMAALEGLVRRLNPTARVERTVSSAVGLTEVLGTGEFDLEEASKAAGWLR 460          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: A0A554G7D8_9DELT (GTP-binding protein n=1 Tax=Corallococcus sp. Z5C101001 TaxID=2596829 RepID=A0A554G7D8_9DELT)

HSP 1 Score: 89.4 bits (220), Expect = 2.810e-19
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 LLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            LL++QVEF+ V++LNK DLVD +G+  +E V+RRLNP AR+LR+ R ++PL EVL T  FD E AS A GW+Q
Sbjct:  174 LLVEQVEFADVLVLNKTDLVDADGLGRVEAVLRRLNPQARILRSERGRVPLREVLDTRAFDFERASRAPGWLQ 246          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: UPI000BB9A4EF (GTP-binding protein n=1 Tax=Bacillus TaxID=1386 RepID=UPI000BB9A4EF)

HSP 1 Score: 88.2 bits (217), Expect = 6.910e-19
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    4 LLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            LL+ Q+EF  V+LLNK DLVDEE +  LE+V+R L P+A+++RT  S++ L+EVL TG F+ + ASN+AGW+Q
Sbjct:  170 LLIDQIEFCDVLLLNKCDLVDEENLEKLEKVLRTLQPSAKIIRTTNSEVDLSEVLNTGLFNFDVASNSAGWLQ 242          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: UPI0006D58AD4 (GTP-binding protein n=1 Tax=Numidum massiliense TaxID=1522315 RepID=UPI0006D58AD4)

HSP 1 Score: 87.8 bits (216), Expect = 9.030e-19
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    4 LLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            LL+ Q+EF  V+LLNK DLV EE +  LE V+R L PTA+++RT++ +I   EVL TG FD E AS AAGWIQ
Sbjct:  169 LLIDQIEFCDVLLLNKCDLVSEEALDQLEAVLRTLQPTAKIIRTVKGKIDPQEVLNTGRFDFERASAAAGWIQ 241          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: B9DL22_STACT (CobW C-terminal domain-containing protein n=20 Tax=Staphylococcus TaxID=1279 RepID=B9DL22_STACT)

HSP 1 Score: 87.8 bits (216), Expect = 9.320e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 LLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            LL+ QVEF  V++LNK DLV EE +  LE ++R+L PTAR +RT+ S++ L++VL T  FD E+ASN+AGW+Q
Sbjct:  169 LLIDQVEFCDVLVLNKTDLVTEEELDRLESILRKLQPTARFIRTVNSEVELSDVLNTSLFDFEKASNSAGWLQ 241          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: UPI00145DB24A (GTP-binding protein n=1 Tax=Bacillus sp. RO3 TaxID=2723914 RepID=UPI00145DB24A)

HSP 1 Score: 87.4 bits (215), Expect = 1.230e-18
Identity = 37/73 (50.68%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    4 LLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            LLL Q+EF  V++LNK DLV +E ++ LE+V+R+L PTAR++R+++ ++P +++L TG FD E AS +AGWI+
Sbjct:  169 LLLDQIEFCDVLVLNKCDLVSDEDLAHLEQVLRKLQPTARIIRSVKGEVPSSDILNTGLFDFENASQSAGWIK 241          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: A0A7S0M4N3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M4N3_9CRYP)

HSP 1 Score: 85.9 bits (211), Expect = 2.020e-18
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 KLLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            +LLL QVEF++VI++NK DL  +  +  LE V+R LNP+AR+L   R ++PLAE+L T  FD +EAS +AGWIQ
Sbjct:   98 ELLLNQVEFANVIVVNKVDLASKAQLGVLEGVLRHLNPSARILLATRGEVPLAEILNTRRFDFQEASQSAGWIQ 171          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: A0A023X241_9ACTN (Putative GTPases (G3E family) n=1 Tax=Rubrobacter radiotolerans TaxID=42256 RepID=A0A023X241_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 2.030e-18
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 LLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            LL++QVEF+ VILLNK DL++ E +  LE+ IR+LNP ARVLRT    +P+ EVLGTG FD E A+ + GW++
Sbjct:  177 LLVEQVEFADVILLNKCDLIEPEEVDVLEDAIRKLNPGARVLRTEHGVVPVREVLGTGLFDFERAAESPGWLR 249          
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Match: A0A7S2XUQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUQ5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.250e-18
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 KLLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQIPLAEVLGTGEFDIEEASNAAGWIQ 222
            +LL+ QVEF+ VI+LNK DLV E+    +E ++R+LNP A V+R+++ Q+ L  V+GT  FD + A+ AAGW+Q
Sbjct:   23 ELLISQVEFADVIVLNKVDLVSEQEADRVETLLRKLNPEAEVVRSVKGQVDLGRVVGTNRFDFDRAAEAAGWLQ 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186297.5066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7B4_ECTSI2.430e-2367.12Cobalamin synthesis protein, P47K n=1 Tax=Ectocarp... [more]
A0A6H5JJT0_9PHAE5.240e-2166.18CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A554G7D8_9DELT2.810e-1957.53GTP-binding protein n=1 Tax=Corallococcus sp. Z5C1... [more]
UPI000BB9A4EF6.910e-1954.79GTP-binding protein n=1 Tax=Bacillus TaxID=1386 Re... [more]
UPI0006D58AD49.030e-1957.53GTP-binding protein n=1 Tax=Numidum massiliense Ta... [more]
B9DL22_STACT9.320e-1954.79CobW C-terminal domain-containing protein n=20 Tax... [more]
UPI00145DB24A1.230e-1850.68GTP-binding protein n=1 Tax=Bacillus sp. RO3 TaxID... [more]
A0A7S0M4N3_9CRYP2.020e-1854.05Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A023X241_9ACTN2.030e-1856.16Putative GTPases (G3E family) n=1 Tax=Rubrobacter ... [more]
A0A7S2XUQ5_9STRA2.250e-1848.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186297contigH-elongata_contig186297:477..698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D7G7B4
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.0159025-CDS-H-elongata_contig186297:476..6981622930066.0159025-CDS-H-elongata_contig186297:476..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186297 477..698 -
1691679267.788404-CDS-H-elongata_contig186297:476..6981691679267.788404-CDS-H-elongata_contig186297:476..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186297 477..698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186297.5066.1prot_H-elongata_contig186297.5066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186297 477..698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186297.5066.1

>prot_H-elongata_contig186297.5066.1 ID=prot_H-elongata_contig186297.5066.1|Name=mRNA_H-elongata_contig186297.5066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
KLLLKQVEFSSVILLNKADLVDEEGISTLEEVIRRLNPTARVLRTIRSQI
PLAEVLGTGEFDIEEASNAAGWIQ
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mRNA from alignment at H-elongata_contig186297:477..698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186297.5066.1 ID=mRNA_H-elongata_contig186297.5066.1|Name=mRNA_H-elongata_contig186297.5066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig186297:477..698- (Himanthalia elongata Himel1 dioecious)
AAATTGCTGCTCAAGCAGGTTGAGTTTTCGAGTGTCATACTTTTGAACAA GGCCGATCTCGTCGATGAGGAGGGTATATCAACTCTCGAGGAGGTGATAC GGCGGCTGAATCCAACGGCACGTGTTCTGCGGACGATCAGGTCCCAGATT CCTCTGGCTGAAGTTTTGGGAACTGGGGAGTTCGATATCGAGGAGGCGTC TAATGCAGCCGGATGGATTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig186297:477..698-

>mRNA_H-elongata_contig186297.5066.1 ID=mRNA_H-elongata_contig186297.5066.1|Name=mRNA_H-elongata_contig186297.5066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig186297:477..698- (Himanthalia elongata Himel1 dioecious)
AAATTGCTGCTCAAGCAGGTTGAGTTTTCGAGTGTCATACTTTTGAACAA
GGCCGATCTCGTCGATGAGGAGGGTATATCAACTCTCGAGGAGGTGATAC
GGCGGCTGAATCCAACGGCACGTGTTCTGCGGACGATCAGGTCCCAGATT
CCTCTGGCTGAAGTTTTGGGAACTGGGGAGTTCGATATCGAGGAGGCGTC
TAATGCAGCCGGATGGATTCAGAAATTGCTGCTCAAGCAGGTTGAGTTTT
CGAGTGTCATACTTTTGAACAAGGCCGATCTCGTCGATGAGGAGGGTATA
TCAACTCTCGAGGAGGTGATACGGCGGCTGAATCCAACGGCACGTGTTCT
GCGGACGATCAGGTCCCAGATTCCTCTGGCTGAAGTTTTGGGAACTGGGG
AGTTCGATATCGAGGAGGCGTCTAATGCAGCCGGATGGATTCAG
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