mRNA_H-elongata_contig18611.5056.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18611.5056.1
Unique NamemRNA_H-elongata_contig18611.5056.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18611.5056.1 vs. uniprot
Match: D8LQ08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 1.820e-103
Identity = 179/343 (52.19%), Postives = 235/343 (68.51%), Query Frame = 1 
Query:    1 QSYLQVRAIVLIMVGLLMAGLSIIGCVGTHRQKKRDCAWGGRRTLSLFQLLLLAMIVGQGVVLIHVYRIEVNLEEAAEELPEEYGEFEDRFRVGFNEAYFDQICGDE--GESWMLSLVNDNCPSTISEEVCSCSVYPPEEGVPASCSVLETFTLDECCPDEDLCEAGTEASCPYSGCRTGVLKLLMIFITPARNYAIFALALEGGILILTCLLICYNPRDSTEDILLKTGALVRM---PSEIPGLTQGEPELSATGAGGKTLKTNNGGSFRNHFVQPAVVE-AGEVKRTRSNSKEG----NPARPTLDSSPIA-HDLPGEPLRQFMTPRVVGNRIIYGPVSPG 996
            Q+Y+Q   I+ +MVG+L+A +SIIGCVGT+RQ +RD  W GRR LSL+QL+L+A++VGQGVV + +Y IEV+LEEAA +LP ++GEFE RFR GFNEAYF+Q+C     G+SW+ SLV D+CP  IS + CSCS      G+PA CS  ET++ + CCPDE+ CEAG E +CPY+ CRTG+L++L+ +ITPAR Y+ F   LEG +LILTCLLICYNPRDSTEDIL+KTG ++R    P E  G   GEP+       G      N      H ++  +V+ AG V+R  +  K G    +P R T   SP+A  ++P EPL QF+TP+  GNRI YGP S G
Sbjct:   43 QTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVSLEEAAADLPIQHGEFEGRFREGFNEAYFEQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPARCSTPETYSAEGCCPDEEFCEAGKEEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQHHKPGEGGG---GEPDSQVGDLEGAPGGAKNPAGASIHALRLDLVQPAGAVRRAGAAGKRGAAGGSPDRATPAMSPMAVENIPTEPLSQFLTPKRGGNRITYGPDSGG 382
[Close]
BLAST of mRNA_H-elongata_contig18611.5056.1 vs. uniprot
Match: A0A812W7H9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7H9_SYMMI)

HSP 1 Score: 124 bits (311), Expect = 1.250e-29
Identity = 78/232 (33.62%), Postives = 125/232 (53.88%), Query Frame = 1 
Query:   25 IVLIMVGLLMAGLSIIGCVGTHRQKKRDCAWGGRRTLSLFQLLLLAMIVGQGVVLIHVYRIEVNLEEAAEELPE-----EYGEFEDRFRVGFNEAYFDQI--CGDEGESWMLSLVNDNCPSTISEEVCSCSVYPPEEGVPASCSVLETFTLDECCPDEDLC--EAGTEASCPYSGCRTGVLKLLMIFITPARNYAIFALAL-EGGILILTCLLICYNPRDSTEDILLKTGAL 690
            IV+I+  +L+  +S++GC+G   Q ++   W GRR L+L+QL LLA I+G   ++  +  +   L+    +L       +YG FE+     FNE +F     C D   +W  S V+D+CP +I +               A C     +++  C  DEDLC  ++G    CPY  CR GVL  L+ ++ P  N A+  +A+ +  I++LTC+LICY P+D+ E +L+KTG +
Sbjct:   51 IVVILFSVLILMISLLGCMGVSHQSEQLSCWTGRRILALYQLSLLATIIGNLWMVTKLIILVRGLDATYSDLTSADDTVDYGRFEEAVADRFNEFFFSAAATCTDSKYAWFWSWVDDHCPVSIGQ---------------ARCMACGDYSVTTCPADEDLCYAQSGGMDKCPYDQCRAGVLDYLISYMEPL-NVALLVIAVFQLCIMVLTCMLICYTPQDTVEQMLVKTGTI 266
[Close]
BLAST of mRNA_H-elongata_contig18611.5056.1 vs. uniprot
Match: K0TPL8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPL8_THAOC)

HSP 1 Score: 121 bits (304), Expect = 1.080e-28
Identity = 75/216 (34.72%), Postives = 113/216 (52.31%), Query Frame = 1 
Query:   64 SIIGCVGTHRQKKRDCAWGGRRTLSLFQLLLLAMIVGQGVVLIHVYRIEVNLEEAAEELPEEYGEFEDRFRVGFNEAYFDQICGDEGES---WMLSLVNDNCPSTISEEVCSCSVYPPEEGVPASCSVLE--TFTLDE--CCPDEDLCEAGTEASCPYSGCRTGVLKLLMIFITPARNYAIFALALEGGILILTCLLICYNPRDSTEDILLKTGAL 690
            S  GC G  RQ KR   + GR+ L L QLLL+A++V     L    ++  ++     +  ++Y  FE+R  V F+  YF  +C     +   W+   V+ NCP  +    C+ S     +    +C  L+  T    E  CCP ++LC++G E++CPY  CR  +   L  F+ PA+  A  ++A  G +++L+ LLICYNPRDS E  L KTG L
Sbjct:   18 SFYGCNGALRQTKRKGCFAGRKILCLHQLLLIAVLVFAFANLEWTTKLHRSVRSFLRDPSQDYNGFEERLSVFFDGEYFKSLCSSNDSTAGDWLEKFVSANCPQQMKPTACALSGRK-RDMCDTTCYALQGDTDRFQELGCCPSKELCQSGFESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVL 232
[Close]
BLAST of mRNA_H-elongata_contig18611.5056.1 vs. uniprot
Match: A0A7S2G7W8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7W8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.540e-23
Identity = 68/228 (29.82%), Postives = 110/228 (48.25%), Query Frame = 1 
Query:   22 AIVLIMVGLLMAGLSIIGCVGTHRQKKRDCAWGGRRTLSLFQLLLLAMIVGQGVVLIHVYRIEVNLEEAAEELPE-------EYGEFEDRFRVGFNEAYFDQICGDEGESWMLSLVNDNCPSTISEEVCSCSVYPPEEGVPASCSVLETFTLDECCPDEDLCEAGTEASCPYSGCRTGVLKLLMIFITPARNYAIFALALEGGILILTCLLICYNPRDSTEDILLKTG 684
            A +LI  G+++  + + GC G   Q++R  +  GRR LS +Q+ LL +I  Q    +++     +L+    EL         EY + E      FN+ YFD + G + + +    V+++CP +       C+V              +++     CPDE  C+ G  A CPY  CR   +   +  + P   Y IF    E  ++ILTC LIC+NPRD+ + IL+K+G
Sbjct:   71 ATILISTGVVILIIVMCGCFGAVYQEQRTGSCRGRRLLSFYQICLLTLIGLQFYTTVYMLNTAESLQAVKGELASAKSNVTVEYVDAERSLSTKFNDYYFDTVTGSQ-DGYFWKFVDESCPKSSGMGSDDCNV--------------DSYATT--CPDEASCDDGASAQCPYDLCRRAAVTRFLGIVEPIGEYGIFVCIFETALMILTCCLICFNPRDAEQTILMKSG 281
[Close]
BLAST of mRNA_H-elongata_contig18611.5056.1 vs. uniprot
Match: W7U843_9STRA (Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U843_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.560e-23
Identity = 77/228 (33.77%), Postives = 108/228 (47.37%), Query Frame = 1 
Query:   37 MVGLLMAGLSIIGCVGTHRQKKRDCAWGGRRTLSLFQLLLLAMIVGQGVVLIHVYRIEVNLEEAAEELPEEYGEFEDRFRVG-FNEAYFDQ----ICGDEGES----WMLSLVNDNCPSTISEEVCSCSVYPPEEGVPASCSVLETFTLDECCPDEDLCEAGTEASCPYSGCRTGVLKLLMIFITPARNYAIFALALEGGILILTCLLICYNPRDSTEDILLKTGALV 693
            +VGL +  LS +GC G  RQ  R    GGRR LSL+QLLLL ++       + +  +   +    +     Y   E    V  FN  YF      +   +G +    W       +CP ++    C+      + G     SV  T   D CCP +DLC AG   +CPY  CR GV + L   +   + Y  F L L+  +LI TC+LICYNPRDS  ++L KTG ++
Sbjct:  105 LVGLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDGGT----SVPYT---DGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVI 325
[Close]
BLAST of mRNA_H-elongata_contig18611.5056.1 vs. uniprot
Match: A0A6H5JEQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.720e-14
Identity = 58/135 (42.96%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:  610 ILILTCLLICYNPRDSTEDILLKTGALVRMPSEIPGLTQGEP------ELSATGAGGKTLKTNNGGSFRNHFVQPAVVEAGEVKRTRSNSKEGNPARPTLDSSPIAHDLPGEPLRQFMTPRVVGNRIIYGPVSPG 996
            +LILTCLLICYNPRDSTEDIL+KTG +VR   + PG   GE       +L  T  G K     +  + R   VQPA          +  +  G+P R T   SP+A       +  F+TPR  GNRI YGP S G
Sbjct:    2 VLILTCLLICYNPRDSTEDILIKTGTIVRQQHK-PGERGGEEPGSQAGDLEGTPGGAKNPAGASIHALRLDLVQPAGAARRAGAVGKRGAAGGSPDRSTPAMSPMA-------VENFLTPRRGGNRITYGPDSDG 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18611.5056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQ08_ECTSI1.820e-10352.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812W7H9_SYMMI1.250e-2933.62Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
K0TPL8_THAOC1.080e-2834.72Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2G7W8_9STRA2.540e-2329.82Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7U843_9STRA2.560e-2333.77Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID... [more]
A0A6H5JEQ5_9PHAE1.720e-1442.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18611contigH-elongata_contig18611:2812..6487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.3
Seed ortholog evalue1.7e-89
Seed eggNOG ortholog2880.D8LQ08
EggNOG OGs2EQYQ@1,2STVK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTetraspanin/Peripherin
Ec32 orthologEc-15_001390.1
Exons7
Model size996
Cds size996
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.7705188-CDS-H-elongata_contig18611:2811..30561622930064.7705188-CDS-H-elongata_contig18611:2811..3056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 2812..3056 -
1691679267.2197769-CDS-H-elongata_contig18611:2811..30561691679267.2197769-CDS-H-elongata_contig18611:2811..3056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 2812..3056 -
1622930064.7825835-CDS-H-elongata_contig18611:3545..37331622930064.7825835-CDS-H-elongata_contig18611:3545..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 3546..3733 -
1691679267.2288542-CDS-H-elongata_contig18611:3545..37331691679267.2288542-CDS-H-elongata_contig18611:3545..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 3546..3733 -
1622930064.800812-CDS-H-elongata_contig18611:3961..40641622930064.800812-CDS-H-elongata_contig18611:3961..4064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 3962..4064 -
1691679267.2368066-CDS-H-elongata_contig18611:3961..40641691679267.2368066-CDS-H-elongata_contig18611:3961..4064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 3962..4064 -
1622930064.8164387-CDS-H-elongata_contig18611:4583..47191622930064.8164387-CDS-H-elongata_contig18611:4583..4719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 4584..4719 -
1691679267.2445116-CDS-H-elongata_contig18611:4583..47191691679267.2445116-CDS-H-elongata_contig18611:4583..4719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 4584..4719 -
1622930064.8327472-CDS-H-elongata_contig18611:5404..55181622930064.8327472-CDS-H-elongata_contig18611:5404..5518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 5405..5518 -
1691679267.2519438-CDS-H-elongata_contig18611:5404..55181691679267.2519438-CDS-H-elongata_contig18611:5404..5518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 5405..5518 -
1622930064.844732-CDS-H-elongata_contig18611:5864..59651622930064.844732-CDS-H-elongata_contig18611:5864..5965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 5865..5965 -
1691679267.267488-CDS-H-elongata_contig18611:5864..59651691679267.267488-CDS-H-elongata_contig18611:5864..5965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 5865..5965 -
1622930064.860288-CDS-H-elongata_contig18611:6378..64871622930064.860288-CDS-H-elongata_contig18611:6378..6487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 6379..6487 -
1691679267.2768338-CDS-H-elongata_contig18611:6378..64871691679267.2768338-CDS-H-elongata_contig18611:6378..6487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18611 6379..6487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18611.5056.1prot_H-elongata_contig18611.5056.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18611 2812..6487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18611.5056.1

>prot_H-elongata_contig18611.5056.1 ID=prot_H-elongata_contig18611.5056.1|Name=mRNA_H-elongata_contig18611.5056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
QSYLQVRAIVLIMVGLLMAGLSIIGCVGTHRQKKRDCAWGGRRTLSLFQL
LLLAMIVGQGVVLIHVYRIEVNLEEAAEELPEEYGEFEDRFRVGFNEAYF
DQICGDEGESWMLSLVNDNCPSTISEEVCSCSVYPPEEGVPASCSVLETF
TLDECCPDEDLCEAGTEASCPYSGCRTGVLKLLMIFITPARNYAIFALAL
EGGILILTCLLICYNPRDSTEDILLKTGALVRMPSEIPGLTQGEPELSAT
GAGGKTLKTNNGGSFRNHFVQPAVVEAGEVKRTRSNSKEGNPARPTLDSS
PIAHDLPGEPLRQFMTPRVVGNRIIYGPVSPG
back to top

mRNA from alignment at H-elongata_contig18611:2812..6487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18611.5056.1 ID=mRNA_H-elongata_contig18611.5056.1|Name=mRNA_H-elongata_contig18611.5056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3676bp|location=Sequence derived from alignment at H-elongata_contig18611:2812..6487- (Himanthalia elongata Himel1 dioecious)
CAGTCGTACCTGCAAGTCCGAGCGATTGTCTTAATCATGGTGGGGCTACT
AATGGCTGGGCTATCCATTATCGGCTGCGTGGGTACCCACCGACAGAAAA
AACGAGATTGTGAGTCTAGCGGGATAGGAAGTCTCACCGCGCAGCATTTG
TAGTTCCTCAAAAGGGGGCGACTCGAGAGTGTAAGGGTATCGACCAAAGA
GGGACAGGGTGCGCGTAGGGGGGTTGATTACGTAATTTTTAGTCGACACA
TCAAAACGCAGAGAGAAGAGCATCCTCGACCACCTCCTTATTCTCGCCGC
CGCGTTGATACGCGCATCGCTATCGATCAACTCTTTCACGATGCAGTCGA
CGCGAACTCAACACTACTCTTTGCCTTGTGTCGGAGGGTTAATCCTAACA
TCAATTCGGGGACTTGCTGCTCGTCCTGGTGAACCCCTAGTATTTCGAAC
GCATCCCAGTAGGGACAACCCCTTAATCGGTGATATACCTAAACATCGTG
CATATTTTTGTCCGCTATCAAGGTGCATGGGGTGGAAGGCGAACCCTAAG
CTTGTTCCAGCTTCTGCTTCTAGCAATGATTGTTGGACAGGGGGTCGTCT
TGATCCATGTGTACCGAATCGAGGTAAGCAAGCCTTTAAGTTAGACCGAA
AGTGCCACACTCAATTCGGTCGAAAACATAGGGGAGGGGCTGGTGTCCAC
GGGTGAAAACCCCATCAATCCGGACTCGACTCGCCACCCCGTGTTTACCC
CACGTAAAGTGTGTACGGTATATTTTTTTATTCTTCTGATGGAGCTCTAT
GCGGCGCACAGCTCCTCCATAACACGGGAAAACTCGAAACGCTCGAAAAG
GAGGCGGCCAAGATTTTTTTGAGCAGTTTCTGTGGCTCAGAAGCATGCGG
CTCGTCTATTTACGGCTCCGGCAAAGCAAAACGCTCTTGGGCGTTTTTGC
TGATTCTTGTATGATAAAGGTCAACCTTGAGGAGGCCGCGGAAGAGTTGC
CAGAGGAGTACGGAGAATTTGAGGACCGCTTCCGGGTGGGTTTCAACGAG
GCGTACTTCGATCAGATATGCGGAGATGAAGGTGTGTCGTCTACCGCAGC
GCGACACCTGTATGTACGAGTTGACTCAAAATGGGTATTATACAGACTGC
TGGCTTTAAGGGCCGTTTTAAACATGCCCGTTTTTTGTCAAATAAATTGA
AAAATCAAACATTTCAACATACTAAACGAGGCGTTTGTCACAATTTGATG
TCAAAAACTTGGAAGCAAACACAGGCGAAAAGTGTGAGCGAGTTGCTTCT
GACGTTATGATTTTTTTTTTTTTTAATTGACGCAGTTTTTTTTTTTAAAT
GGCAACATTTTCGACATTTTGTTTTATGTATAAAACGGCCCTAAGTACAC
ACCCAAATTATGTACAGTTCAACATCTAGTTTTTGAGTAATAATGCTCGC
TCACTCTGTTTTGCCGACTTAATCGATACCTAATCTTTAATCATCGGTGC
ATACACCACGTCGTAACAAAACAAAACAAATACATCTTTTTCAAGGGAGG
CTGGCCTCAAGCACGTCCGACGTGCTCAACACTCGAAGAGCATGAGAAAT
AACTTTACGAAGAAGGCGGAGTGCATGCTCGAGTCCTGTCTGTGGGTAAT
TGAGTCGTAACCCCGTCGGCCAAACAGTCTTCAACGCCAACCTAGCGCTT
TAAAGCCACGCATACATATTACCTCTTTACCCGTCATATCCCCAAATATT
TTCACTAAAACAGGGGAGGAAAGCTGGATGTTGTCACTTGTAAACGACAA
CTGCCCCTCAACTATTTCTGAAGAGGTTTGCTCGTGCTCGGTGTATCCGC
CTGAAGAAGGGGTTCCCGCATCGTGCTCGGTTCTGGAGACATTCACCCTA
GACGGTGCGTCGTTTCTTGATGCCGGATGTTGTAACAGTGGCTGATGCCT
GCGACTCTTTATAACTGATTGTTACATCAAACAACTACCTCTTGCCTCTA
TAGGGGGATGGCACCACGAATCTGGGCCCTGAAACGTCACTTCACAGTGA
AATATGGACACCCCATAGAAAAGCTAGCGGCAGGCGGGGGGCGGCTATGT
TTGTTCTTCATGAAGAATAGCGATTGACGGCAAAATTATGACTTACGGTA
TTTCTCGACGCCTTGACCTCACACGATGGTCGACGACCCCGACGCAACCT
TCCCGTATCCTTGCTGACATGCATCGTTCAAAATTTTTCAATAATATGAC
CTTGTAGAATTTTTCGAGGGCTCAAAAACTGCCGGAAATACAACCTTTGA
AAGAGAGCCCGCCGGGTTACTCGTAATAATAGCTTCGCCGCCATGGTTGC
GCATATCTTGCCCATCTGGAATCATTAAGTGCTCAATGTCTTTCGCGTTC
TCTCATTCCAATAATTTACAAAGAGTGCTGCCCGGACGAGGATCTGTGCG
AAGCAGGGACAGAAGCTTCGTGTCCTTACTCCGGCTGTCGCACAGGCGTA
CTCAAGCTGCTAATGATCTTCATCACGTAAGAGAGAGGCACGTAGCGTAG
CAGGAACAGCGAGATCGATGGGTCAAAGAAAGCTCTCCACGAGTTTTGGT
CCGTTGTTTCCGTCAAGACGTCGGGATACTAGGGACGTGGCATTTACTTG
CGTCTCGCCGCCCAAACAACCCGCTTCAGCACTTTTGTCTGCCCAATTCC
ACCATATTATTTATCGAACTCCTCCCGACTTCACCCACTTTGTTGCCGTC
GCAGCCCTGCTCGAAATTATGCAATCTTTGCGCTCGCCCTGGAGGGGGGC
ATCCTCATCCTCACTTGTCTCTTGATCTGTTACAACCCGAGGGATAGTAC
GGAAGACATTCTCCTCAAGACGGGCGCCCTCGTTCGTATGCCGTCGGAAA
TACCGGGACTCACGCAAGGTGAACCCGAGCTATCTGCAACAGGTATGATC
AGAACAAAGTATCCCCTCTCCTGTATTAGCTTCTGGATGAAGACCGGCTA
CGTACGATGAGCCCCGGAAATAGCATTGTTCATTCGTGCTGTGGTAGGGT
AGGGTTTGAGAGGTGGGGGGTCTAACCGTATTGCTGCTGGTTTATGACGG
AGGTGCGTAAATCTATCACTTATTGATTTTTCATTACACTCGAAATAACC
CTCACGCACCATACGTAGGATCTCATTTCCTTGACGATAAATAACATCGC
CATCGTTTAAGGCACCCCAACGGAGACGATGATGTTGCCCTTCTTCCCGT
GCATGTCACTCGCCGTCATCCATATATAATACCCGTCATGAAGGAGTCAT
TCAGGCCTGTTAGAGGTGGTCGCAGTCTTGATGCGATATGCTGTAAACTA
CTTTGCTCCCGAAACGACCTACTCCCATATGTGTGATATTTTATCACGTG
CCAGGTCTAATCAACATTCAGAGGACAACAGGTGCGGGCGGTAAGACGCT
GAAGACAAATAATGGCGGAAGCTTTAGGAATCATTTCGTACAGCCGGCGG
TGGTAGAGGCAGGAGAAGTCAAACGTACAAGAAGCAATTCAAAGGAGGGT
AACCCGGCACGGCCAACCCTCGATTCCTCGCCAATCGCGCACGACCTACC
AGGGGAGCCACTTCGCCAGTTTATGACCCCAAGAGTGGTCGGAAACAGGA
TTATTTACGGTCCCGTTTCACCGGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18611:2812..6487-

>mRNA_H-elongata_contig18611.5056.1 ID=mRNA_H-elongata_contig18611.5056.1|Name=mRNA_H-elongata_contig18611.5056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig18611:2812..6487- (Himanthalia elongata Himel1 dioecious)
CAGTCGTACCTGCAAGTCCGAGCGATTGTCTTAATCATGGTGGGGCTACT
AATGGCTGGGCTATCCATTATCGGCTGCGTGGGTACCCACCGACAGAAAA
AACGAGATTCAGTCGTACCTGCAAGTCCGAGCGATTGTCTTAATCATGGT
GGGGCTACTAATGGCTGGGCTATCCATTATCGGCTGCGTGGGTACCCACC
GACAGAAAAAACGAGATTGTGCATGGGGTGGAAGGCGAACCCTAAGCTTG
TTCCAGCTTCTGCTTCTAGCAATGATTGTTGGACAGGGGGTCGTCTTGAT
CCATGTGTACCGAATCGAGGTGCATGGGGTGGAAGGCGAACCCTAAGCTT
GTTCCAGCTTCTGCTTCTAGCAATGATTGTTGGACAGGGGGTCGTCTTGA
TCCATGTGTACCGAATCGAGGTCAACCTTGAGGAGGCCGCGGAAGAGTTG
CCAGAGGAGTACGGAGAATTTGAGGACCGCTTCCGGGTGGGTTTCAACGA
GGCGTACTTCGATCAGATATGCGGAGATGAAGGTGTCAACCTTGAGGAGG
CCGCGGAAGAGTTGCCAGAGGAGTACGGAGAATTTGAGGACCGCTTCCGG
GTGGGTTTCAACGAGGCGTACTTCGATCAGATATGCGGAGATGAAGGTGA
AAGCTGGATGTTGTCACTTGTAAACGACAACTGCCCCTCAACTATTTCTG
AAGAGGTTTGCTCGTGCTCGGTGTATCCGCCTGAAGAAGGGGTTCCCGCA
TCGTGCTCGGTTCTGGAGACATTCACCCTAGACGGAAAGCTGGATGTTGT
CACTTGTAAACGACAACTGCCCCTCAACTATTTCTGAAGAGGTTTGCTCG
TGCTCGGTGTATCCGCCTGAAGAAGGGGTTCCCGCATCGTGCTCGGTTCT
GGAGACATTCACCCTAGACGAGTGCTGCCCGGACGAGGATCTGTGCGAAG
CAGGGACAGAAGCTTCGTGTCCTTACTCCGGCTGTCGCACAGGCGTACTC
AAGCTGCTAATGATCTTCATCACAGTGCTGCCCGGACGAGGATCTGTGCG
AAGCAGGGACAGAAGCTTCGTGTCCTTACTCCGGCTGTCGCACAGGCGTA
CTCAAGCTGCTAATGATCTTCATCACCCCTGCTCGAAATTATGCAATCTT
TGCGCTCGCCCTGGAGGGGGGCATCCTCATCCTCACTTGTCTCTTGATCT
GTTACAACCCGAGGGATAGTACGGAAGACATTCTCCTCAAGACGGGCGCC
CTCGTTCGTATGCCGTCGGAAATACCGGGACTCACGCAAGGTGAACCCGA
GCTATCTGCAACAGCCCTGCTCGAAATTATGCAATCTTTGCGCTCGCCCT
GGAGGGGGGCATCCTCATCCTCACTTGTCTCTTGATCTGTTACAACCCGA
GGGATAGTACGGAAGACATTCTCCTCAAGACGGGCGCCCTCGTTCGTATG
CCGTCGGAAATACCGGGACTCACGCAAGGTGAACCCGAGCTATCTGCAAC
AGGTGCGGGCGGTAAGACGCTGAAGACAAATAATGGCGGAAGCTTTAGGA
ATCATTTCGTACAGCCGGCGGTGGTAGAGGCAGGAGAAGTCAAACGTACA
AGAAGCAATTCAAAGGAGGGTAACCCGGCACGGCCAACCCTCGATTCCTC
GCCAATCGCGCACGACCTACCAGGGGAGCCACTTCGCCAGTTTATGACCC
CAAGAGTGGTCGGAAACAGGATTATTTACGGTCCCGTTTCACCGGGAGTG
CGGGCGGTAAGACGCTGAAGACAAATAATGGCGGAAGCTTTAGGAATCAT
TTCGTACAGCCGGCGGTGGTAGAGGCAGGAGAAGTCAAACGTACAAGAAG
CAATTCAAAGGAGGGTAACCCGGCACGGCCAACCCTCGATTCCTCGCCAA
TCGCGCACGACCTACCAGGGGAGCCACTTCGCCAGTTTATGACCCCAAGA
GTGGTCGGAAACAGGATTATTTACGGTCCCGTTTCACCGGGA
back to top