mRNA_H-elongata_contig186084.5055.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186084.5055.1
Unique NamemRNA_H-elongata_contig186084.5055.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: D7FP41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP41_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 9.160e-27
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   25 QDHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCIMDN 180
            +DHND+CEVCSHGGDLLCCDTC+LVFHTKC RPELK++P GDWNCQFC+ D+
Sbjct:  107 EDHNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADS 158
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: A0A6H5KSV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 9.170e-27
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   25 QDHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCIMDN 180
            +DHND+CEVCSHGGDLLCCDTC+LVFHTKC RPELK++P GDWNCQFC+ D+
Sbjct:  141 EDHNDLCEVCSHGGDLLCCDTCSLVFHTKCHRPELKEVPAGDWNCQFCVADS 192
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: A0A7S3M305_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M305_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.420e-22
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   13 ATSSQDHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCIMDN 180
            + S  DH++VCEVC  GGDLLCCDTC LVFH KC RP+L  IP+G W+C  CI+D+
Sbjct:   63 SNSFDDHDEVCEVCEKGGDLLCCDTCTLVFHLKCFRPKLSGIPKGSWSCPHCIIDD 118
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: K0SZ98_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZ98_THAOC)

HSP 1 Score: 85.5 bits (210), Expect = 7.720e-18
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   31 HNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCIMDN--PNKS 192
            HND+CE C  GGDLLCC TCNLVFH +C RP+L  IPE DW+C +CI     P+K+
Sbjct: 1762 HNDLCETCGLGGDLLCCSTCNLVFHLECTRPKLATIPENDWSCAYCIASGEIPSKT 1817
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: B7FZ99_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZ99_PHATC)

HSP 1 Score: 83.6 bits (205), Expect = 3.640e-17
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 SMNHATSSQDHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCIMDNPNKSA 195
            SM+ AT  + HND+CEVC   GDLL C+TCNLVFH  C+RP L+ +PE D+ C +C++    K++
Sbjct:  225 SMDTATFVKAHNDLCEVCDEAGDLLMCETCNLVFHVACVRPALETLPEQDYKCAYCVLSTEPKNS 289
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: K0T856_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T856_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 1.270e-16
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   31 HNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIP-EGDWNCQFCIMD 177
            HND+CEVC+  G+LLCC +CNLVFH KC+RP L D P E DWNC +CI D
Sbjct:  383 HNDLCEVCNEPGELLCCGSCNLVFHVKCVRPILTDEPAEDDWNCPYCIAD 432
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: A0A369RVZ2_9METZ (Chromodomain-helicase-DNA-binding protein 3-like protein n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RVZ2_9METZ)

HSP 1 Score: 82.0 bits (201), Expect = 1.270e-16
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   28 DHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCIMDNPNKSAGEL 204
            DHND C VC  GG LLCCD+C L +H +CL P L+DIPEGDW C  C+     K   ++
Sbjct:  269 DHNDFCHVCKDGGQLLCCDSCPLSYHLRCLNPPLEDIPEGDWRCPRCLCPRLTKKVEKI 327
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: A0A7S2E5U7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E5U7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.740e-16
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 SMNHATSSQDHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCI 171
            SM+       HND+CEVC+ GGDLLCC TCNLVFH  C RP LK +P  +W+C +C+
Sbjct:  270 SMDEEEFLNQHNDLCEVCNTGGDLLCCATCNLVFHQACSRPVLKKLPPDNWSCAYCV 326
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BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: A0A7S4QH92_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QH92_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.380e-16
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 SMNHATSSQDHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCI 171
            SM+       HND+CEVC+ GGDLLCC TCNLVFH  C RP LK +P  +W+C +C+
Sbjct:  270 SMDEEEFLNQHNDLCEVCNTGGDLLCCATCNLVFHQACSRPVLKKLPPDNWSCAYCV 326
[Close]
BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Match: K0S9D6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9D6_THAOC)

HSP 1 Score: 79.7 bits (195), Expect = 8.210e-16
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   31 HNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDWNCQFCIMD 177
            HND CEVC+  G+LLCC TCNLVFH  C+RP+L   P  DW C FC+ D
Sbjct:  182 HNDACEVCNQPGELLCCSTCNLVFHIDCVRPKLTGDPPDDWACAFCVAD 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186084.5055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP41_ECTSI9.160e-2780.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSV1_9PHAE9.170e-2780.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3M305_9STRA4.420e-2262.50Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K0SZ98_THAOC7.720e-1860.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B7FZ99_PHATC3.640e-1750.77Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0T856_THAOC1.270e-1666.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A369RVZ2_9METZ1.270e-1652.54Chromodomain-helicase-DNA-binding protein 3-like p... [more]
A0A7S2E5U7_9STRA1.740e-1656.14Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QH92_9STRA2.380e-1656.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0S9D6_THAOC8.210e-1661.22Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186084contigH-elongata_contig186084:359..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D7FP41
EggNOG free text desc.methylated histone binding
EggNOG OGsKOG1473@1,KOG1473@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size204
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.7148056-UTR-H-elongata_contig186084:358..3611622930064.7148056-UTR-H-elongata_contig186084:358..361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186084 359..361 +
1691679267.1948736-UTR-H-elongata_contig186084:358..3611691679267.1948736-UTR-H-elongata_contig186084:358..361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186084 359..361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.7317924-CDS-H-elongata_contig186084:361..5651622930064.7317924-CDS-H-elongata_contig186084:361..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186084 362..565 +
1691679267.2079313-CDS-H-elongata_contig186084:361..5651691679267.2079313-CDS-H-elongata_contig186084:361..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186084 362..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186084.5055.1prot_H-elongata_contig186084.5055.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186084 362..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186084.5055.1

>prot_H-elongata_contig186084.5055.1 ID=prot_H-elongata_contig186084.5055.1|Name=mRNA_H-elongata_contig186084.5055.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MNHATSSQDHNDVCEVCSHGGDLLCCDTCNLVFHTKCLRPELKDIPEGDW
NCQFCIMDNPNKSAGEL*
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mRNA from alignment at H-elongata_contig186084:359..565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186084.5055.1 ID=mRNA_H-elongata_contig186084.5055.1|Name=mRNA_H-elongata_contig186084.5055.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig186084:359..565+ (Himanthalia elongata Himel1 dioecious)
TCGATGAACCACGCAACATCCTCGCAGGACCACAACGACGTCTGCGAGGT
TTGCTCTCACGGAGGCGATCTTCTCTGCTGCGACACGTGCAACCTGGTGT
TCCACACCAAGTGCTTGCGTCCGGAACTGAAAGATATCCCTGAGGGCGAC
TGGAACTGTCAGTTTTGCATTATGGACAACCCCAACAAATCTGCGGGTGA
GCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig186084:359..565+

>mRNA_H-elongata_contig186084.5055.1 ID=mRNA_H-elongata_contig186084.5055.1|Name=mRNA_H-elongata_contig186084.5055.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig186084:359..565+ (Himanthalia elongata Himel1 dioecious)
ATGAACCACGCAACATCCTCGCAGGACCACAACGACGTCTGCGAGGTTTG
CTCTCACGGAGGCGATCTTCTCTGCTGCGACACGTGCAACCTGGTGTTCC
ACACCAAGTGCTTGCGTCCGGAACTGAAAGATATCCCTGAGGGCGACTGG
AACTGTCAGTTTTGCATTATGGACAACCCCAACAAATCTGCGGGTGAGCT
GTGAATGAACCACGCAACATCCTCGCAGGACCACAACGACGTCTGCGAGG
TTTGCTCTCACGGAGGCGATCTTCTCTGCTGCGACACGTGCAACCTGGTG
TTCCACACCAAGTGCTTGCGTCCGGAACTGAAAGATATCCCTGAGGGCGA
CTGGAACTGTCAGTTTTGCATTATGGACAACCCCAACAAATCTGCGGGTG
AGCTGTGA
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