mRNA_H-elongata_contig186006.5052.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186006.5052.1
Unique NamemRNA_H-elongata_contig186006.5052.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186006.5052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186006contigH-elongata_contig186006:370..1227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size858
Cds size858
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.4923465-CDS-H-elongata_contig186006:369..12271622930064.4923465-CDS-H-elongata_contig186006:369..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186006 370..1227 +
1691679267.0950806-CDS-H-elongata_contig186006:369..12271691679267.0950806-CDS-H-elongata_contig186006:369..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186006 370..1227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186006.5052.1prot_H-elongata_contig186006.5052.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186006 370..1227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186006.5052.1

>prot_H-elongata_contig186006.5052.1 ID=prot_H-elongata_contig186006.5052.1|Name=mRNA_H-elongata_contig186006.5052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MAPSATDIGCMGVVSATGSFGSSAFSPTSSTNEKNAFAAAAVPVCGVAPL
DPVTCDTELMAPSATDIGCMGVVSATGSFGSSAFSPTSSNNENNVFAAAA
VAVSGVAPLDPVTSGAGFTVSSTPDTDCAEVVSATGSFGSSVFPVKSVTN
ENNALAAAAFAVSDIAPLDPSTSGAVLTASCASDTRCAGVISVALKFDSF
ADFPVKSATHEKNTFAASAVVVPGAASSDPFTSCVGLIGPSTNDTGCAGV
VSATGSFGSSSAFPSMSSTNEKNAFAAAAVAVCGVA
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mRNA from alignment at H-elongata_contig186006:370..1227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186006.5052.1 ID=mRNA_H-elongata_contig186006.5052.1|Name=mRNA_H-elongata_contig186006.5052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig186006:370..1227+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCCTTCCGCTACCGATATAGGCTGCATGGGAGTCGTTTCCGCGAC
CGGTTCCTTTGGATCATCTGCCTTTTCCCCCACGTCCTCCACCAATGAAA
AGAATGCCTTCGCTGCGGCTGCGGTCCCCGTCTGCGGTGTGGCTCCGCTA
GATCCCGTTACATGCGATACTGAATTGATGGCCCCTTCCGCTACCGATAT
AGGCTGCATGGGAGTCGTTTCCGCGACCGGTTCCTTTGGATCATCTGCCT
TTTCCCCCACGTCCTCCAACAATGAAAATAATGTCTTCGCTGCGGCTGCG
GTCGCCGTTAGCGGTGTTGCTCCACTAGATCCCGTTACAAGCGGTGCTGG
TTTCACGGTCTCTTCCACTCCCGATACGGACTGCGCGGAAGTTGTTTCCG
CGACCGGTTCCTTCGGCTCCTCGGTATTTCCCGTCAAGTCCGTCACCAAT
GAAAATAACGCCTTAGCTGCCGCCGCGTTTGCCGTCTCCGATATAGCTCC
GCTAGATCCCTCTACCAGCGGCGCTGTTTTGACGGCTTCATGCGCTAGTG
ATACGCGCTGCGCGGGAGTCATTTCCGTGGCCTTAAAATTCGACTCCTTT
GCTGACTTTCCCGTCAAGTCCGCCACCCACGAAAAGAACACCTTCGCTGC
CTCCGCGGTCGTCGTCCCCGGTGCAGCTTCCTCTGATCCCTTTACCAGCT
GTGTTGGTTTGATAGGCCCTTCTACTAACGATACGGGTTGCGCAGGAGTC
GTTTCCGCGACCGGGTCCTTCGGCTCCTCCTCTGCCTTTCCCTCCATGTC
CTCCACCAATGAAAAGAATGCCTTCGCTGCGGCTGCGGTCGCCGTTTGCG
GTGTGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig186006:370..1227+

>mRNA_H-elongata_contig186006.5052.1 ID=mRNA_H-elongata_contig186006.5052.1|Name=mRNA_H-elongata_contig186006.5052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig186006:370..1227+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCCTTCCGCTACCGATATAGGCTGCATGGGAGTCGTTTCCGCGAC
CGGTTCCTTTGGATCATCTGCCTTTTCCCCCACGTCCTCCACCAATGAAA
AGAATGCCTTCGCTGCGGCTGCGGTCCCCGTCTGCGGTGTGGCTCCGCTA
GATCCCGTTACATGCGATACTGAATTGATGGCCCCTTCCGCTACCGATAT
AGGCTGCATGGGAGTCGTTTCCGCGACCGGTTCCTTTGGATCATCTGCCT
TTTCCCCCACGTCCTCCAACAATGAAAATAATGTCTTCGCTGCGGCTGCG
GTCGCCGTTAGCGGTGTTGCTCCACTAGATCCCGTTACAAGCGGTGCTGG
TTTCACGGTCTCTTCCACTCCCGATACGGACTGCGCGGAAGTTGTTTCCG
CGACCGGTTCCTTCGGCTCCTCGGTATTTCCCGTCAAGTCCGTCACCAAT
GAAAATAACGCCTTAGCTGCCGCCGCGTTTGCCGTCTCCGATATAGCTCC
GCTAGATCCCTCTACCAGCGGCGCTGTTTTGACGGCTTCATGCGCTAGTG
ATACGCGCTGCGCGGGAGTCATTTCCGTGGCCTTAAAATTCGACTCCTTT
GCTGACTTTCCCGTCAAGTCCGCCACCCACGAAAAGAACACCTTCGCTGC
CTCCGCGGTCGTCGTCCCCGGTGCAGCTTCCTCTGATCCCTTTACCAGCT
GTGTTGGTTTGATAGGCCCTTCTACTAACGATACGGGTTGCGCAGGAGTC
GTTTCCGCGACCGGGTCCTTCGGCTCCTCCTCTGCCTTTCCCTCCATGTC
CTCCACCAATGAAAAGAATGCCTTCGCTGCGGCTGCGGTCGCCGTTTGCG
GTGTGGCTATGGCCCCTTCCGCTACCGATATAGGCTGCATGGGAGTCGTT
TCCGCGACCGGTTCCTTTGGATCATCTGCCTTTTCCCCCACGTCCTCCAC
CAATGAAAAGAATGCCTTCGCTGCGGCTGCGGTCCCCGTCTGCGGTGTGG
CTCCGCTAGATCCCGTTACATGCGATACTGAATTGATGGCCCCTTCCGCT
ACCGATATAGGCTGCATGGGAGTCGTTTCCGCGACCGGTTCCTTTGGATC
ATCTGCCTTTTCCCCCACGTCCTCCAACAATGAAAATAATGTCTTCGCTG
CGGCTGCGGTCGCCGTTAGCGGTGTTGCTCCACTAGATCCCGTTACAAGC
GGTGCTGGTTTCACGGTCTCTTCCACTCCCGATACGGACTGCGCGGAAGT
TGTTTCCGCGACCGGTTCCTTCGGCTCCTCGGTATTTCCCGTCAAGTCCG
TCACCAATGAAAATAACGCCTTAGCTGCCGCCGCGTTTGCCGTCTCCGAT
ATAGCTCCGCTAGATCCCTCTACCAGCGGCGCTGTTTTGACGGCTTCATG
CGCTAGTGATACGCGCTGCGCGGGAGTCATTTCCGTGGCCTTAAAATTCG
ACTCCTTTGCTGACTTTCCCGTCAAGTCCGCCACCCACGAAAAGAACACC
TTCGCTGCCTCCGCGGTCGTCGTCCCCGGTGCAGCTTCCTCTGATCCCTT
TACCAGCTGTGTTGGTTTGATAGGCCCTTCTACTAACGATACGGGTTGCG
CAGGAGTCGTTTCCGCGACCGGGTCCTTCGGCTCCTCCTCTGCCTTTCCC
TCCATGTCCTCCACCAATGAAAAGAATGCCTTCGCTGCGGCTGCGGTCGC
CGTTTGCGGTGTGGCT
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