mRNA_H-elongata_contig186.5050.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186.5050.1
Unique NamemRNA_H-elongata_contig186.5050.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186.5050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186contigH-elongata_contig186:21319..22123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size496
Cds size378
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186.5050.1prot_H-elongata_contig186.5050.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186 21436..22123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.0116863-UTR-H-elongata_contig186:21318..214351622930064.0116863-UTR-H-elongata_contig186:21318..21435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186 21319..21435 -
1691679266.9141574-UTR-H-elongata_contig186:21318..214351691679266.9141574-UTR-H-elongata_contig186:21318..21435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186 21319..21435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.0742488-CDS-H-elongata_contig186:21435..215791622930064.0742488-CDS-H-elongata_contig186:21435..21579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186 21436..21579 -
1691679266.9238703-CDS-H-elongata_contig186:21435..215791691679266.9238703-CDS-H-elongata_contig186:21435..21579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186 21436..21579 -
1622930064.0926175-CDS-H-elongata_contig186:21889..221231622930064.0926175-CDS-H-elongata_contig186:21889..22123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186 21890..22123 -
1691679266.9313793-CDS-H-elongata_contig186:21889..221231691679266.9313793-CDS-H-elongata_contig186:21889..22123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186 21890..22123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186.5050.1

>prot_H-elongata_contig186.5050.1 ID=prot_H-elongata_contig186.5050.1|Name=mRNA_H-elongata_contig186.5050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
GGAFHSSYNRHCLSARDITSASKGWPTHTAEAFVRKTLHLRDKTVVRSSG
CKTQRLSDHVIPREEPDPREWKEEAATEEDEEALEGAVTPHGRHCCRQGV
ALVGSRELRVQDPSPVRPCRTKRRT*
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mRNA from alignment at H-elongata_contig186:21319..22123-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186.5050.1 ID=mRNA_H-elongata_contig186.5050.1|Name=mRNA_H-elongata_contig186.5050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=805bp|location=Sequence derived from alignment at H-elongata_contig186:21319..22123- (Himanthalia elongata Himel1 dioecious)
GGTGGTGCTTTTCATTCATCTTACAATAGGCACTGTCTTTCCGCACGCGA
TATCACCTCTGCAAGCAAGGGCTGGCCCACACATACAGCCGAAGCGTTCG
TTCGCAAGACTCTGCATCTTCGTGATAAAACGGTAGTCAGGAGCTCCGGG
TGCAAGACGCAGCGCCTATCCGACCATGTCATACCAAGGGAAGAACCTGA
CCCCAGGGAGTGGAAAGAAGAAGCGGCGACGGAAGCAGGGACAAAGAGGA
GGATGAAAACAGGGATAGGGATAAGGACGGGGACGGTGATAGGGACGGAA
ACTGGGGAGGAGACAGAGACCGGGAAGGGGATGATATTGGAGGGCAGAGG
GTAGATCGAAGAGAGAGCCCGTTTTTTTCCAAGAGATAGGACAAGTGAGG
AAGAAGACCCGAGAGAGAGGGTGCCGCCTACGGGTCACCCGAATCTGCAG
CAGCAAGATCCGATGCCCCAGCGAGAACGTTGCGTCATGCGAATGGCCAA
AGCCCACGGGCAGGTAGTGAGGGACGGGATCGGGGAGGGAAGAGGAGGAC
GAGGAGGCGTTAGAAGGTGCTGTCACTCCACACGGGCGTCATTGCTGCAG
ACAGGGAGTGGCGCTTGTAGGCAGCCGGGAACTTCGGGTGCAAGATCCGT
CACCAGTCCGACCATGTCGTACGAAGAGGAGAACCTGATCCCAGGGACGA
AATGGAAGGCACGATAACGGGAATAGGGACGGGGGTGAAGACGGCGATGG
AAACGGGAACATGAATAGGAATGGTGACGGTGACGGAACCGAAAACGGGA
AAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig186:21319..22123-

>mRNA_H-elongata_contig186.5050.1 ID=mRNA_H-elongata_contig186.5050.1|Name=mRNA_H-elongata_contig186.5050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig186:21319..22123- (Himanthalia elongata Himel1 dioecious)
GGTGGTGCTTTTCATTCATCTTACAATAGGCACTGTCTTTCCGCACGCGA
TATCACCTCTGCAAGCAAGGGCTGGCCCACACATACAGCCGAAGCGTTCG
TTCGCAAGACTCTGCATCTTCGTGATAAAACGGTAGTCAGGAGCTCCGGG
TGCAAGACGCAGCGCCTATCCGACCATGTCATACCAAGGGAAGAACCTGA
CCCCAGGGAGTGGAAAGAAGAAGCGGCGACGGAAGGTGGTGCTTTTCATT
CATCTTACAATAGGCACTGTCTTTCCGCACGCGATATCACCTCTGCAAGC
AAGGGCTGGCCCACACATACAGCCGAAGCGTTCGTTCGCAAGACTCTGCA
TCTTCGTGATAAAACGGTAGTCAGGAGCTCCGGGTGCAAGACGCAGCGCC
TATCCGACCATGTCATACCAAGGGAAGAACCTGACCCCAGGGAGTGGAAA
GAAGAAGCGGCGACGGAAGAGGACGAGGAGGCGTTAGAAGGTGCTGTCAC
TCCACACGGGCGTCATTGCTGCAGACAGGGAGTGGCGCTTGTAGGCAGCC
GGGAACTTCGGGTGCAAGATCCGTCACCAGTCCGACCATGTCGTACGAAG
AGGAGAACCTGAGAGGACGAGGAGGCGTTAGAAGGTGCTGTCACTCCACA
CGGGCGTCATTGCTGCAGACAGGGAGTGGCGCTTGTAGGCAGCCGGGAAC
TTCGGGTGCAAGATCCGTCACCAGTCCGACCATGTCGTACGAAGAGGAGA
ACCTGA
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