mRNA_H-elongata_contig185968.5047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185968.5047.1
Unique NamemRNA_H-elongata_contig185968.5047.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Match: D7G130_ECTSI (Tudor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G130_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.300e-51
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 VIKNVSEDGQDFEVTYMGYGSEGSATITTLRQITRSSRPVAAAAAVKGLECKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQKRAVVSQAK 306
            VI +VSEDGQDF VTYMGYG+EG+ATITTLRQITRS RPVAAAAAVKGLEC+ALY+GDG YYDC IQEVTANGYK++FPAYGNVEEVPLEYLQK+  +S AK
Sbjct:  141 VIDSVSEDGQDFGVTYMGYGTEGTATITTLRQITRSPRPVAAAAAVKGLECRALYVGDGTYYDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAK 242
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BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Match: A0A6H5JFR7_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.870e-51
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 VIKNVSEDGQDFEVTYMGYGSEGSATITTLRQITRSSRPVAAAAAVKGLECKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQKRAVVSQAK 306
            VI +VSEDGQDF VTYMGYG+EG+ATITTLRQITRS RPVAAAAAVKGLEC+ALY+GDG YYDC IQEVTANGYK++FPAYGNVEEVPLEYLQK+  +S AK
Sbjct:  141 VIDSVSEDGQDFGVTYMGYGTEGTATITTLRQITRSPRPVAAAAAVKGLECRALYVGDGTYYDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAK 242
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BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Match: A0A7S2USF4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USF4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.590e-13
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    1 VIKNVSEDGQDFEVTYMGYGSEGSATITT-----LRQITRSSRPVAAAAAVKG-----LECKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQ 279
            V+ + +  G    V Y+G+G++ +  +T      L+    ++RP+     V G      +C A Y GDG YY+  +QEVT  G+KV F AYGN EEVPLEYLQ
Sbjct:   24 VVVSAAGPGNVATVHYIGHGADDTIDLTVSKLRVLKPPREATRPITNVLEVHGGIGPGFQCLARYSGDGQYYEATVQEVTVYGFKVAFTAYGNAEEVPLEYLQ 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G130_ECTSI1.300e-5183.33Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFR7_9PHAE1.870e-5183.33Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2USF4_9STRA2.590e-1339.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185968contigH-elongata_contig185968:150..837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue8.8e-42
Seed eggNOG ortholog2880.D7G130
Preferred nameSMNDC1
KEGG koko:K07179,ko:K10410,ko:K12839
KEGG Pathwayko03008,ko03040,ko05016,map03008,map03040,map05016
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0009987,GO:0010467,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG3026@1,KOG3026@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_001310.1
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.8540537-CDS-H-elongata_contig185968:149..2761622930063.8540537-CDS-H-elongata_contig185968:149..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185968 150..276 -
1691679266.8871744-CDS-H-elongata_contig185968:149..2761691679266.8871744-CDS-H-elongata_contig185968:149..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185968 150..276 -
1622930063.869762-CDS-H-elongata_contig185968:658..8371622930063.869762-CDS-H-elongata_contig185968:658..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185968 659..837 -
1691679266.8968365-CDS-H-elongata_contig185968:658..8371691679266.8968365-CDS-H-elongata_contig185968:658..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185968 659..837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185968.5047.1prot_H-elongata_contig185968.5047.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185968 150..837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185968.5047.1

>prot_H-elongata_contig185968.5047.1 ID=prot_H-elongata_contig185968.5047.1|Name=mRNA_H-elongata_contig185968.5047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
VIKNVSEDGQDFEVTYMGYGSEGSATITTLRQITRSSRPVAAAAAVKGLE
CKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQKRAVVSQ
AK
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mRNA from alignment at H-elongata_contig185968:150..837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185968.5047.1 ID=mRNA_H-elongata_contig185968.5047.1|Name=mRNA_H-elongata_contig185968.5047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=688bp|location=Sequence derived from alignment at H-elongata_contig185968:150..837- (Himanthalia elongata Himel1 dioecious)
GTGATCAAGAATGTATCCGAAGACGGACAAGACTTCGAGGTGACCTACAT
GGGCTACGGCTCAGAAGGCTCGGCGACGATCACCACCCTCCGGCAAATCA
CGCGGTCTTCGAGACCGGTGGCGGCAGCAGCAGCGGTGAAGGGGCTGGAG
TGCAAGGCACTATACATGGGGGACGGAGTGTGAGTAAACTCTCGCCGTCT
TCGGCAATCAGTCACCGTTGCCGCACGTGTGACTATTCTTGTTGAGTGCG
CAATAATCAGTCACGGTTGTAAGACGTCAGCCTATGACACAGATGATACG
TACGGCCATGATGAGTTCCGATATTGCGGTGATGTCCATCACGTTCTTGG
CCATTTCCCCCCCCCGTCTTCTCGCCTTTCCCACCGATCTCTAAATGCAG
ACTTACTACTATAATAGCTCTTAATTCGTGGAACCCTGCAAACTCGCAAG
GCCCATCAAAGGGGATTTCGGGTGCGATGGTCGCATGCATGACTCCCTCA
ATCTAATCGTGTCTCTCGACCGTATCCCCCCTCCTTTTACCCCGTGGCGC
ACTCCCTGTAGATACTATGATTGCGAGATCCAAGAGGTGACAGCGAACGG
CTACAAGGTGATATTCCCCGCCTATGGGAACGTCGAAGAGGTGCCTTTGG
AGTACCTGCAGAAGAGGGCTGTTGTGTCTCAAGCAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig185968:150..837-

>mRNA_H-elongata_contig185968.5047.1 ID=mRNA_H-elongata_contig185968.5047.1|Name=mRNA_H-elongata_contig185968.5047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig185968:150..837- (Himanthalia elongata Himel1 dioecious)
GTGATCAAGAATGTATCCGAAGACGGACAAGACTTCGAGGTGACCTACAT
GGGCTACGGCTCAGAAGGCTCGGCGACGATCACCACCCTCCGGCAAATCA
CGCGGTCTTCGAGACCGGTGGCGGCAGCAGCAGCGGTGAAGGGGCTGGAG
TGCAAGGCACTATACATGGGGGACGGAGTGTGATCAAGAATGTATCCGAA
GACGGACAAGACTTCGAGGTGACCTACATGGGCTACGGCTCAGAAGGCTC
GGCGACGATCACCACCCTCCGGCAAATCACGCGGTCTTCGAGACCGGTGG
CGGCAGCAGCAGCGGTGAAGGGGCTGGAGTGCAAGGCACTATACATGGGG
GACGGAGTATACTATGATTGCGAGATCCAAGAGGTGACAGCGAACGGCTA
CAAGGTGATATTCCCCGCCTATGGGAACGTCGAAGAGGTGCCTTTGGAGT
ACCTGCAGAAGAGGGCTGTTGTGTCTCAAGCAAAGATACTATGATTGCGA
GATCCAAGAGGTGACAGCGAACGGCTACAAGGTGATATTCCCCGCCTATG
GGAACGTCGAAGAGGTGCCTTTGGAGTACCTGCAGAAGAGGGCTGTTGTG
TCTCAAGCAAAG
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