mRNA_H-elongata_contig185925.5044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185925.5044.1
Unique NamemRNA_H-elongata_contig185925.5044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185925.5044.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.150e-8
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:  289 ERHRFNWKIVIMYIIDGRPWAIINGLDMKMLLAELNSAAVATTPSKSTLDRVLDEMYGEGKATLIATLPSLKAEMDRSGYSGGFCGLQLDLTTVANVEYVTITIS 603
            +R   + + VI   I+ RP  +      K+ +  L+   V TT + +T ++VLD +Y   K  ++  L  L+ E    GY G F G  LDLTTVAN EY+T T+S
Sbjct:    9 QRDLADLRYVIWCCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVS 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185925.5044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXV5_9PHAE4.150e-836.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185925contigH-elongata_contig185925:292..1075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size784
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185925.5044.1prot_H-elongata_contig185925.5044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185925 547..1038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.5566552-UTR-H-elongata_contig185925:291..5461622930063.5566552-UTR-H-elongata_contig185925:291..546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185925 292..546 +
1691679266.7943826-UTR-H-elongata_contig185925:291..5461691679266.7943826-UTR-H-elongata_contig185925:291..546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185925 292..546 +
1622930063.5911794-UTR-H-elongata_contig185925:1038..10751622930063.5911794-UTR-H-elongata_contig185925:1038..1075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185925 1039..1075 +
1691679266.8123083-UTR-H-elongata_contig185925:1038..10751691679266.8123083-UTR-H-elongata_contig185925:1038..1075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185925 1039..1075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.5758314-CDS-H-elongata_contig185925:546..10381622930063.5758314-CDS-H-elongata_contig185925:546..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185925 547..1038 +
1691679266.8025057-CDS-H-elongata_contig185925:546..10381691679266.8025057-CDS-H-elongata_contig185925:546..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185925 547..1038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185925.5044.1

>prot_H-elongata_contig185925.5044.1 ID=prot_H-elongata_contig185925.5044.1|Name=mRNA_H-elongata_contig185925.5044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MFGKLQVFTGPERHRFNWKIVIMYIIDGRPWAIINGLDMKMLLAELNSAA
VATTPSKSTLDRVLDEMYGEGKATLIATLPSLKAEMDRSGYSGGFCGLQL
DLTTVANVEYVTITISANAKESPNVQFSSDITLLRIHCCTCVVNKKITSF
GAAVLVIGDCRHY*
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mRNA from alignment at H-elongata_contig185925:292..1075+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185925.5044.1 ID=mRNA_H-elongata_contig185925.5044.1|Name=mRNA_H-elongata_contig185925.5044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=784bp|location=Sequence derived from alignment at H-elongata_contig185925:292..1075+ (Himanthalia elongata Himel1 dioecious)
ATATTTATTCAATTGCATATACCCGCGCAACCCGGCTCTGTCGTGCCAGT
CATTCTAGGCTACTCTCGCGTTGATACTCCCAATAGGGAATCAAACATAT
TTGCTCTTTGTGTGTGTGTGTGTGTTGTGTCATTTCTTTGACCGTAAGCC
TGAAAAAAGAACAAGTAATGTCGTCCATGTTGTGTGAATCCTCCCACCGT
TCTGTTGCTGCCGTCGTTTCTACTTTATACAGCTGCATCTTCAAGCGCCG
CTGCCATGTTCGGCAAACTTCAGGTTTTCACTGGCCCCGAACGGCACCGC
TTCAACTGGAAAATTGTTATTATGTATATAATCGATGGTCGGCCGTGGGC
GATCATCAACGGTCTTGACATGAAAATGCTACTAGCAGAACTAAACAGCG
CAGCGGTAGCGACGACGCCGAGCAAGTCAACGCTTGACAGGGTGTTAGAT
GAGATGTATGGTGAGGGAAAGGCCACTCTCATCGCGACCTTGCCTAGTCT
AAAAGCCGAGATGGACCGCAGCGGGTACAGCGGGGGGTTCTGTGGACTAC
AGCTCGACCTCACAACCGTCGCCAACGTTGAGTACGTGACGATCACTATT
TCGGCGAACGCAAAGGAGAGCCCCAACGTGCAGTTCTCCAGCGACATCAC
GTTATTGAGGATCCATTGTTGTACTTGTGTTGTCAACAAGAAAATAACGA
GTTTCGGTGCTGCTGTATTGGTGATTGGTGATTGCCGTCACTACTAGTAA
TCGATTCAGCTGTTATTATCGGATGTTGTGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig185925:292..1075+

>mRNA_H-elongata_contig185925.5044.1 ID=mRNA_H-elongata_contig185925.5044.1|Name=mRNA_H-elongata_contig185925.5044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig185925:292..1075+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGCAAACTTCAGGTTTTCACTGGCCCCGAACGGCACCGCTTCAA
CTGGAAAATTGTTATTATGTATATAATCGATGGTCGGCCGTGGGCGATCA
TCAACGGTCTTGACATGAAAATGCTACTAGCAGAACTAAACAGCGCAGCG
GTAGCGACGACGCCGAGCAAGTCAACGCTTGACAGGGTGTTAGATGAGAT
GTATGGTGAGGGAAAGGCCACTCTCATCGCGACCTTGCCTAGTCTAAAAG
CCGAGATGGACCGCAGCGGGTACAGCGGGGGGTTCTGTGGACTACAGCTC
GACCTCACAACCGTCGCCAACGTTGAGTACGTGACGATCACTATTTCGGC
GAACGCAAAGGAGAGCCCCAACGTGCAGTTCTCCAGCGACATCACGTTAT
TGAGGATCCATTGTTGTACTTGTGTTGTCAACAAGAAAATAACGAGTTTC
GGTGCTGCTGTATTGGTGATTGGTGATTGCCGTCACTACTAGATGTTCGG
CAAACTTCAGGTTTTCACTGGCCCCGAACGGCACCGCTTCAACTGGAAAA
TTGTTATTATGTATATAATCGATGGTCGGCCGTGGGCGATCATCAACGGT
CTTGACATGAAAATGCTACTAGCAGAACTAAACAGCGCAGCGGTAGCGAC
GACGCCGAGCAAGTCAACGCTTGACAGGGTGTTAGATGAGATGTATGGTG
AGGGAAAGGCCACTCTCATCGCGACCTTGCCTAGTCTAAAAGCCGAGATG
GACCGCAGCGGGTACAGCGGGGGGTTCTGTGGACTACAGCTCGACCTCAC
AACCGTCGCCAACGTTGAGTACGTGACGATCACTATTTCGGCGAACGCAA
AGGAGAGCCCCAACGTGCAGTTCTCCAGCGACATCACGTTATTGAGGATC
CATTGTTGTACTTGTGTTGTCAACAAGAAAATAACGAGTTTCGGTGCTGC
TGTATTGGTGATTGGTGATTGCCGTCACTACTAG
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