mRNA_H-elongata_contig18588.5039.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18588.5039.1
Unique NamemRNA_H-elongata_contig18588.5039.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18588.5039.1 vs. uniprot
Match: D8LCG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG8_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 1.490e-112
Identity = 230/531 (43.31%), Postives = 297/531 (55.93%), Query Frame = 1 
Query:    1 EQLRGLRSELRHAARAARSTFKEGDRVESRWRRPTRLERPRVDPDAWHAGRVIAVSADGS-IGMVFEDGDRDRLNRIPTTHVRLAP-----------------------GPSLRPPPMNSSNSMPQTQVKHCSSKLDLVC-ASRRELAHVTITTDFLRRSWEDPLTMNQELSRLRRLYEKIIRSRPAWRGSFPTVSFQATKTVPIGGD-------------ATRAVRGGAQYQDRTRKLRHLERYDARCGARRA--------RRPSCVVFHSRGLLAASTRRVGYEKCAKLDLHP--DVNAFDIPETPYSPPL-----------------LVKAQTNLIAAVMAYDRCVSAASDCLQRGVSSFRAARSYSEQQRAFDEVTAYLGPAQRARPGYKDWRGNAIVGLQSTTLDVVEAMNAWAIERAV--------------ISEKAIVAKEKDTCSRGGAHTYKAPPFLWEGLPLVSTIIGHSAKVLERAPELKRWYGPGFPVERNPFFLSYSIDDRPLTPMNALPRTYIEGEV 1356
            +Q RGL  E++ A + A +TF+EGDRVESRWRRPTRL++ ++DP AWH GRV+    DG  + +VFEDGD +RL+ I T HVRLAP                       G S R    NS +  P   V   +   +LVC ASR ELAH+   T FLR +WEDP+ ++QE++RLR L E+ +R RP WRGSFP V F ATK +P G               A  A       +DR  + +     D+R   R          + P+ V    R       +  G ++C   D +   + NA    +   S                    L++AQ  L++A +AYDR V+ A DCL RG ++FR AR+YSEQQ+AF+E TA LGPAQ AR GY DWRG+ +VGLQS TLDVVEAM+AWA E A                +E+ +V K+        A    APPFLWEG PLVSTIIG SAK++  APELK WYGPGFP+ERNPFFL+Y +DDRP+TP +AL R ++ GEV
Sbjct:  331 QQSRGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKDGGRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXXXXXXXXXXXVMAAGVSGR---RNSCDRRPSC-VPTSAPTDELVCSASRGELAHIACATKFLRCTWEDPVPISQEMARLRMLEERKMRGRPEWRGSFPLVDFSATKRLPFGAGGMARTGGRRARNAAASAATAAVATRDRQLQAQGTVHDDSRTRLRTVQWSPSSSLKMPTTVPQVHREENIDRDQGQG-DRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXGATALLEAQAKLVSAALAYDRYVAGARDCLDRGCAAFRLARTYSEQQKAFEESTAILGPAQPARAGYTDWRGSPVVGLQSATLDVVEAMDAWAAEWAADKGGKPDTGGGGNAFAEEGVVLKDGAVAEVAVA----APPFLWEGSPLVSTIIGQSAKLVAGAPELKGWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGEV 852
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BLAST of mRNA_H-elongata_contig18588.5039.1 vs. uniprot
Match: A0A6H5JB67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB67_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 6.400e-110
Identity = 225/537 (41.90%), Postives = 293/537 (54.56%), Query Frame = 1 
Query:    1 EQLRGLRSELRHAARAARSTFKEGDRVESRWRRPTRLERPRVDPDAWHAGRVIAVSADGS-IGMVFEDGDRDRLNRIPTTHVRLAPGPSLRPPPMNSSNSMPQTQV---------KHCSSK---------LDLVCAS-RRELAHVTITTDFLRRSWEDPLTMNQELSRLRRLYEKIIRSRPAWRGSFPTVSFQATKTVPIGGD-------------ATRAVRGGAQYQDRTRKLRHLERYDARCGARRA--------RRPSCVVFHSRGLLAASTRRVGY-EKCAKLDLHP--DVNAFDIPETPYSPPL------------------------LVKAQTNLIAAVMAYDRCVSAASDCLQRGVSSFRAARSYSEQQRAFDEVTAYLGPAQRARPGYKDWRGNAIVGLQSTTLDVVEAMNAWAIERAVISEKAIVAKEKDTCSRGGAHTYK-----------------APPFLWEGLPLVSTIIGHSAKVLERAPELKRWYGPGFPVERNPFFLSYSIDDRPLTPMNALPRTYIEGEV 1356
            +Q +GL  E++ A + A +TF+EGDRVESRWRRPTRL++ ++DP AWH GRV+     G  + +VFEDGD +RL+ I T HVRLAP           S+      V           C  +          +LVC++ RRELAH+   T  LR +WE P+ ++QE++RLR L E+ +RSRP WRGSFP V F ATK +P G               A  AV      +D   + +   R D+R   R          + P  V    R       R +G  ++C   D +   + NA    +   S                           L+ AQ  L++A +AYDRCV+   DCL RG ++FR AR+YSEQQ+AF+E TA LGPAQ AR GYKDWRG+ +VGLQS TLDVVEAM+ WA E AV       AK   T + GG + +                  APPFLWEG PLVST+IG SAK++  APELK WYGPGFP+ERNPFFL+Y +DDRP+TP +AL R ++ GEV
Sbjct:  249 QQSQGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKGGDRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXLVSSGRDDDYVTAAGVTGRRNSCDRRPSCAPTPAPTELVCSAIRRELAHIACATKSLRCTWEVPVPISQEMARLRMLEERKMRSRPEWRGSFPLVDFSATKRLPFGAGGMARTVVRKVKNTAASAVSAVLATRDHQLQAQSTVRDDSRTRLRTVQSSPSSSLKMPMTVPQVQRD--ENDDRDLGQGDRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXXXXXXXXXXTALLAAQAKLVSAAVAYDRCVAGVRDCLDRGCAAFRLARTYSEQQKAFEESTATLGPAQPARAGYKDWRGSPVVGLQSATLDVVEAMDDWAAEWAV-------AKGGKTDAGGGDNAFAEEGVVLKDGAVEEVAVAAPPFLWEGSPLVSTVIGQSAKLVAGAPELKEWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGEV 776
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18588.5039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCG8_ECTSI1.490e-11243.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB67_9PHAE6.400e-11041.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18588contigH-elongata_contig18588:4794..6605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score366.7
Seed ortholog evalue1.8e-98
Seed eggNOG ortholog2880.D8LCG8
EggNOG OGs2CYV0@1,2S6K7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005000.1
Exons2
Model size1536
Cds size1536
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.1222007-CDS-H-elongata_contig18588:4793..49761622930063.1222007-CDS-H-elongata_contig18588:4793..4976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 4794..4976 -
1691679266.6167786-CDS-H-elongata_contig18588:4793..49761691679266.6167786-CDS-H-elongata_contig18588:4793..4976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 4794..4976 -
1622930063.1378102-CDS-H-elongata_contig18588:5252..66051622930063.1378102-CDS-H-elongata_contig18588:5252..6605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 5253..6605 -
1691679266.626638-CDS-H-elongata_contig18588:5252..66051691679266.626638-CDS-H-elongata_contig18588:5252..6605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 5253..6605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18588.5039.1prot_H-elongata_contig18588.5039.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18588 4794..6605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18588.5039.1

>prot_H-elongata_contig18588.5039.1 ID=prot_H-elongata_contig18588.5039.1|Name=mRNA_H-elongata_contig18588.5039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=512bp
EQLRGLRSELRHAARAARSTFKEGDRVESRWRRPTRLERPRVDPDAWHAG
RVIAVSADGSIGMVFEDGDRDRLNRIPTTHVRLAPGPSLRPPPMNSSNSM
PQTQVKHCSSKLDLVCASRRELAHVTITTDFLRRSWEDPLTMNQELSRLR
RLYEKIIRSRPAWRGSFPTVSFQATKTVPIGGDATRAVRGGAQYQDRTRK
LRHLERYDARCGARRARRPSCVVFHSRGLLAASTRRVGYEKCAKLDLHPD
VNAFDIPETPYSPPLLVKAQTNLIAAVMAYDRCVSAASDCLQRGVSSFRA
ARSYSEQQRAFDEVTAYLGPAQRARPGYKDWRGNAIVGLQSTTLDVVEAM
NAWAIERAVISEKAIVAKEKDTCSRGGAHTYKAPPFLWEGLPLVSTIIGH
SAKVLERAPELKRWYGPGFPVERNPFFLSYSIDDRPLTPMNALPRTYIEG
EVTTTASTTLLAERKEAALKAVLDKQAAAPSWWPAKGGMVNKAHYGRIRQ
AEKVLLREERNV
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mRNA from alignment at H-elongata_contig18588:4794..6605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18588.5039.1 ID=mRNA_H-elongata_contig18588.5039.1|Name=mRNA_H-elongata_contig18588.5039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1812bp|location=Sequence derived from alignment at H-elongata_contig18588:4794..6605- (Himanthalia elongata Himel1 dioecious)
GAACAGTTGCGCGGGTTACGCTCGGAACTCAGACACGCTGCAAGAGCGGC
GCGCAGCACCTTCAAGGAGGGTGACAGGGTTGAGAGTCGTTGGCGTCGGC
CAACACGACTGGAGAGACCTCGCGTCGATCCTGATGCCTGGCACGCGGGG
CGCGTTATAGCCGTCAGTGCGGACGGCAGCATCGGCATGGTTTTCGAGGA
CGGAGACAGAGATCGTCTAAACAGAATACCTACCACGCATGTTCGTCTTG
CTCCAGGACCATCATTAAGGCCTCCGCCCATGAATAGCTCCAATTCTATG
CCGCAAACACAGGTGAAACATTGTTCGTCAAAATTGGACTTAGTCTGCGC
GAGTCGGAGGGAGCTCGCACATGTAACAATCACGACGGATTTTCTTCGAC
GTAGCTGGGAGGATCCTTTGACGATGAACCAAGAGCTATCGAGACTCAGG
AGGCTGTATGAGAAAATAATCCGGAGCAGGCCGGCATGGCGAGGGTCATT
CCCCACCGTCAGCTTTCAGGCGACGAAGACGGTACCCATCGGTGGTGACG
CGACGCGCGCGGTACGGGGGGGAGCTCAATATCAAGATAGAACACGAAAG
TTGCGCCATCTGGAGCGCTATGACGCAAGATGCGGAGCAAGGAGAGCTCG
AAGACCATCGTGTGTGGTTTTTCATTCTCGCGGTTTGCTTGCGGCATCGA
CAAGAAGAGTGGGTTACGAAAAATGTGCAAAACTCGATCTGCATCCGGAT
GTTAATGCTTTCGATATCCCCGAGACGCCCTATTCCCCGCCGTTGCTTGT
CAAGGCTCAGACCAACCTGATCGCGGCAGTGATGGCGTACGACAGATGCG
TGTCTGCAGCAAGCGATTGCCTTCAACGCGGGGTTTCCTCCTTTCGCGCA
GCGCGCTCTTATTCGGAGCAACAAAGAGCTTTCGATGAAGTCACCGCGTA
CTTAGGTCCTGCTCAGCGGGCCCGCCCGGGGTACAAAGACTGGCGCGGCA
ACGCCATCGTTGGACTCCAAAGCACGACGCTGGACGTTGTTGAGGCAATG
AACGCCTGGGCGATAGAACGGGCGGTAATCTCCGAAAAAGCTATCGTCGC
GAAGGAGAAAGACACATGCAGCCGTGGAGGGGCGCATACATATAAGGCCC
CTCCGTTCTTGTGGGAAGGCTTGCCGCTTGTATCTACGATTATCGGTCAC
AGCGCCAAAGTGCTCGAGCGCGCGCCGGAGCTGAAGAGATGGTACGGCCC
CGGATTTCCAGTCGAGCGGAATCCGTTCTTCCTCTCATATTCTATCGATG
ATCGGCCACTGACGCCGATGAACGCTCTCCCACGGACGTACATAGAAGGC
GAGGTGAGCGAAACGTACCCTTGCACGGCAGCTATGTCTTATTGTTTGGA
AGTGAGCTTTCTTCACCCGATGCAAGGGACTGCCTCACAGAGAGGCGAGA
AATGGCTGACTATTCAGCAAAACATTCAGCTTAACCAGGAAGTTACCGCA
TTTGTCGCACACAATCGCGGGAAATCTCTCATTGCTAACATATTAAATCA
CATCACAGTCATCTCCGAAACAATATCTATTCACGGCACGCACCACTTAA
TGCTCCCTGCAAAAACCACTCTGGAAAAGGTAACGACGACTGCAAGCACC
ACCCTCCTGGCGGAAAGAAAAGAAGCGGCTCTTAAGGCTGTCCTCGATAA
ACAAGCGGCAGCGCCTTCGTGGTGGCCAGCAAAAGGTGGGATGGTGAACA
AGGCGCACTACGGCAGGATACGACAGGCAGAGAAGGTGCTCCTTCGGGAA
GAGCGCAATGTG
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Coding sequence (CDS) from alignment at H-elongata_contig18588:4794..6605-

>mRNA_H-elongata_contig18588.5039.1 ID=mRNA_H-elongata_contig18588.5039.1|Name=mRNA_H-elongata_contig18588.5039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3072bp|location=Sequence derived from alignment at H-elongata_contig18588:4794..6605- (Himanthalia elongata Himel1 dioecious)
GAACAGTTGCGCGGGTTACGCTCGGAACTCAGACACGCTGCAAGAGCGGC
GCGCAGCACCTTCAAGGAGGGTGACAGGGTTGAGAGTCGTTGGCGTCGGC
CAACACGACTGGAGAGACCTCGCGTCGATCCTGATGCCTGGCACGCGGGG
CGCGTTATAGCCGTCAGTGCGGACGGCAGCATCGGCATGGTTTTCGAGGA
CGGAGACAGAGATCGTCTAAACAGAATACCTACCACGCATGTTCGTCTTG
CTCCAGGACCATCATTAAGGCCTCCGCCCATGAATAGCTCCAATTCTATG
CCGCAAACACAGGTGAAACATTGTTCGTCAAAATTGGACTTAGTCTGCGC
GAGTCGGAGGGAGCTCGCACATGTAACAATCACGACGGATTTTCTTCGAC
GTAGCTGGGAGGATCCTTTGACGATGAACCAAGAGCTATCGAGACTCAGG
AGGCTGTATGAGAAAATAATCCGGAGCAGGCCGGCATGGCGAGGGTCATT
CCCCACCGTCAGCTTTCAGGCGACGAAGACGGTACCCATCGGTGGTGACG
CGACGCGCGCGGTACGGGGGGGAGCTCAATATCAAGATAGAACACGAAAG
TTGCGCCATCTGGAGCGCTATGACGCAAGATGCGGAGCAAGGAGAGCTCG
AAGACCATCGTGTGTGGTTTTTCATTCTCGCGGTTTGCTTGCGGCATCGA
CAAGAAGAGTGGGTTACGAAAAATGTGCAAAACTCGATCTGCATCCGGAT
GTTAATGCTTTCGATATCCCCGAGACGCCCTATTCCCCGCCGTTGCTTGT
CAAGGCTCAGACCAACCTGATCGCGGCAGTGATGGCGTACGACAGATGCG
TGTCTGCAGCAAGCGATTGCCTTCAACGCGGGGTTTCCTCCTTTCGCGCA
GCGCGCTCTTATTCGGAGCAACAAAGAGCTTTCGATGAAGTCACCGCGTA
CTTAGGTCCTGCTCAGCGGGCCCGCCCGGGGTACAAAGACTGGCGCGGCA
ACGCCATCGTTGGACTCCAAAGCACGACGCTGGACGTTGTTGAGGCAATG
AACGCCTGGGCGATAGAACGGGCGGTAATCTCCGAAAAAGCTATCGTCGC
GAAGGAGAAAGACACATGCAGCCGTGGAGGGGCGCATACATATAAGGCCC
CTCCGTTCTTGTGGGAAGGCTTGCCGCTTGTATCTACGATTATCGGTCAC
AGCGCCAAAGTGCTCGAGCGCGCGCCGGAGCTGAAGAGATGGTACGGCCC
CGGATTTCCAGTCGAGCGGAATCCGTTCTTCCTCTCATATTCTATCGATG
ATCGGCCACTGACGCCGATGAACGCTCTCCCACGGACGTACATAGAAGGC
GAGGAACAGTTGCGCGGGTTACGCTCGGAACTCAGACACGCTGCAAGAGC
GGCGCGCAGCACCTTCAAGGAGGGTGACAGGGTTGAGAGTCGTTGGCGTC
GGCCAACACGACTGGAGAGACCTCGCGTCGATCCTGATGCCTGGCACGCG
GGGCGCGTTATAGCCGTCAGTGCGGACGGCAGCATCGGCATGGTTTTCGA
GGACGGAGACAGAGATCGTCTAAACAGAATACCTACCACGCATGTTCGTC
TTGCTCCAGGACCATCATTAAGGCCTCCGCCCATGAATAGCTCCAATTCT
ATGCCGCAAACACAGGTGAAACATTGTTCGTCAAAATTGGACTTAGTCTG
CGCGAGTCGGAGGGAGCTCGCACATGTAACAATCACGACGGATTTTCTTC
GACGTAGCTGGGAGGATCCTTTGACGATGAACCAAGAGCTATCGAGACTC
AGGAGGCTGTATGAGAAAATAATCCGGAGCAGGCCGGCATGGCGAGGGTC
ATTCCCCACCGTCAGCTTTCAGGCGACGAAGACGGTACCCATCGGTGGTG
ACGCGACGCGCGCGGTACGGGGGGGAGCTCAATATCAAGATAGAACACGA
AAGTTGCGCCATCTGGAGCGCTATGACGCAAGATGCGGAGCAAGGAGAGC
TCGAAGACCATCGTGTGTGGTTTTTCATTCTCGCGGTTTGCTTGCGGCAT
CGACAAGAAGAGTGGGTTACGAAAAATGTGCAAAACTCGATCTGCATCCG
GATGTTAATGCTTTCGATATCCCCGAGACGCCCTATTCCCCGCCGTTGCT
TGTCAAGGCTCAGACCAACCTGATCGCGGCAGTGATGGCGTACGACAGAT
GCGTGTCTGCAGCAAGCGATTGCCTTCAACGCGGGGTTTCCTCCTTTCGC
GCAGCGCGCTCTTATTCGGAGCAACAAAGAGCTTTCGATGAAGTCACCGC
GTACTTAGGTCCTGCTCAGCGGGCCCGCCCGGGGTACAAAGACTGGCGCG
GCAACGCCATCGTTGGACTCCAAAGCACGACGCTGGACGTTGTTGAGGCA
ATGAACGCCTGGGCGATAGAACGGGCGGTAATCTCCGAAAAAGCTATCGT
CGCGAAGGAGAAAGACACATGCAGCCGTGGAGGGGCGCATACATATAAGG
CCCCTCCGTTCTTGTGGGAAGGCTTGCCGCTTGTATCTACGATTATCGGT
CACAGCGCCAAAGTGCTCGAGCGCGCGCCGGAGCTGAAGAGATGGTACGG
CCCCGGATTTCCAGTCGAGCGGAATCCGTTCTTCCTCTCATATTCTATCG
ATGATCGGCCACTGACGCCGATGAACGCTCTCCCACGGACGTACATAGAA
GGCGAGGTAACGACGACTGCAAGCACCACCCTCCTGGCGGAAAGAAAAGA
AGCGGCTCTTAAGGCTGTCCTCGATAAACAAGCGGCAGCGCCTTCGTGGT
GGCCAGCAAAAGGTGGGATGGTGAACAAGGCGCACTACGGCAGGATACGA
CAGGCAGAGAAGGTGCTCCTTCGGGAAGAGCGCAATGTGGTAACGACGAC
TGCAAGCACCACCCTCCTGGCGGAAAGAAAAGAAGCGGCTCTTAAGGCTG
TCCTCGATAAACAAGCGGCAGCGCCTTCGTGGTGGCCAGCAAAAGGTGGG
ATGGTGAACAAGGCGCACTACGGCAGGATACGACAGGCAGAGAAGGTGCT
CCTTCGGGAAGAGCGCAATGTG
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