mRNA_H-elongata_contig18588.5038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18588.5038.1
Unique NamemRNA_H-elongata_contig18588.5038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 1.240e-68
Identity = 129/212 (60.85%), Postives = 157/212 (74.06%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTG---PAPKDTKDGKAGER--------SADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSRESQRTATVGSAA 603
            KVV+RRLPH+MKEE+F+ AL   A +A +GER  SWDL+YF PGKMSK+RGRVT TAYL I+R RG +ADLS+ KLRAAV   +A+T    PA   +K+G             +A AGP V AAPFQKLFKQKPK+DVRVGTIEKDA +KAFCAALQSP     SADVQ D R+ EGK++PK  NA+LDFL+ER A++ R+SQR A +GS+A
Sbjct:   27 KVVVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSSA 238          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.370e-20
Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTR 486
            K+V+RRL      EDF + +  VA EA   ER  ++ ++Y++PGK+SK+RG++T   YL + R  G++         AA +   A          D  A      A P+V  AP+Q++F+ KP++D   GT E+D D++AFCAAL+ P     SADVQ+D R
Sbjct:   64 KIVVRRLSPYFTPEDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAGVTP--------AAAVDAVAXXXXXXXXXFDTHARADPDAARPLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQR 217          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A061RR23_9CHLO (Regulator of nonsense transcripts 3 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RR23_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 7.710e-9
Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSRESQRTATVGSA 600
            KVV+R+LP E+ +E+F TAL  + + +R      SW    F  GK+S +R    S AYL++  T       ++I+  A +            + +  KAG     A   V  APFQK  + + +KD R GT+ KDADF++F   L++P     SA+ Q+   +     D      +++F++++ A+K+ + +  A  G+A
Sbjct:   10 KVVVRKLPPELTQEEFQTALDSILDRSRY-----SW--FRFMQGKISLKRV-YNSCAYLKLKDT------ATVIEFSAKI------------NGRHFKAGNLRPLACE-VQYAPFQKAPRARSRKDPREGTLCKDADFQSFKERLEAPPAPLPSAEGQLQADEKGSGSDAVVVTPLMEFIRQKYARKAPKPKVAAVKGAA 182          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 9.570e-8
Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMS-----KRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSR 567
            KV++R +PH M  +  L  L     +A    R S W    F PGK+       R GR+    YL   +   L+  + I KL   VL+          D KD    +        V  APFQK+ ++K +KD ++GTI++D DF AF   L  P     SADV  D ++ EG + P +  A++ +L ER+  K++
Sbjct:  100 KVLVRDIPHTMDLDKMLEVL-----DANGVARDSVWR---FVPGKVRGNNRVPRPGRL----YLDFKKETELAKTV-ITKLDGYVLS----------DVKDTPKLQ--------VDFAPFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAEKPVA--ALVQYLNERKRDKAK 260          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A423SUN6_PENVA (Regulator of nonsense transcripts 3A n=2 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423SUN6_PENVA)

HSP 1 Score: 62.4 bits (150), Expect = 1.120e-6
Identity = 61/201 (30.35%), Postives = 89/201 (44.28%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQ--KPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSA------DVQVDTRDLEGKDDP-KSPNAILDFLKEREAKKSRESQ 576
            KVV RRLP  M EE+FL A++P+AE          +D   F P   S       S AY+    T  +            V               D K  E  A    MV  APFQK+ K+    KKD+RVGTI++D DF AF  +L+ P             ++Q   R+L+  +   K    +L+F+++++A+K R  +
Sbjct:   43 KVVARRLPPTMTEEEFLEAVSPLAE----------YDYFSFVPADKSLG-AHAFSRAYINFKNTDDVFTFRDRFDSYVFV---------------DKKGNEYPA----MVEYAPFQKIPKRAGNKKKDIRVGTIDQDPDFMAFLESLEKPESVQLPTLEVVLEEIQAHERELKANNGIIKVKTPLLEFIEQKKAEKLRTKE 213          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A2D4CDX7_PYTIN (Smg4_UPF3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDX7_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 3.060e-6
Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKM-SKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSR 567
            KVVIR++PH++ EE     +     +A    R+  W    F PGK+    R       YL   +    +  + + +L+ A +T                 G  + D    V  APFQK+ ++K ++D +VGTIEKD ++ AF   L  P     SAD+ +D++D    + P +  A++ +L ER   K +
Sbjct:  114 KVVIRQIPHDVDEETVYARIL----DAHDVSRSHIWR---FVPGKVRGNNRPPYPGRLYLDFKKDTEXATSV-VAQLKGAEIT--------------SSKGTVTLD----VDFAPFQKIPREKQRRDPKVGTIEKDPEYLAFLEDLAKPAEKLPSADLALDSKDGAAAEKPVA--ALVQYLNERRRDKGK 275          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A662YFV9_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFV9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.960e-6
Identity = 55/186 (29.57%), Postives = 86/186 (46.24%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKM-SKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLA-APFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDL-EGKDDPKSPNAILDFLKER 549
            K+V+R LP    E D L  L P+  +      AS W    F  G++   +R  V +  YL + +    +  L       A L  ++  G    D K G+  +   DA  +V+  APFQK+ ++K +KD +VGTI++D ++ AF   LQ P     S        D+ EG+   K    ++ +L ER
Sbjct:   53 KLVVRNLPPSATEADALRLLAPLGVDG-----ASVWR---FVAGRVRGNQRAPVPARLYLDLKKEPERARKL------IAALHGQSFWGD---DAKGGRLQDNGEDASSLVVEFAPFQKIPREKQRKDAKVGTIDRDPEYLAFLEELQKPRDVSLSLPSAEAVADMAEGEAVEKPVATLVKYLNER 221          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: K3XC97_GLOUD (Smg4_UPF3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC97_GLOUD)

HSP 1 Score: 60.8 bits (146), Expect = 5.220e-6
Identity = 63/206 (30.58%), Postives = 93/206 (45.15%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKM-SKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREA----KKSRESQRTATVGSAA 603
            KVV+R +PH   +ED + AL     EA    R S W    F PGK+    R   T   YL + +            L  A     A+ G     T D  A          V  AP+QK+ + K +KD +VGTI++D ++ AF   L  P     SA+V  DT +++  + P +  A++ ++ ER+     K   +S + A  GSAA
Sbjct:   95 KVVVRNIPHTT-DEDAIWALV----EAHGVTRESLWR---FVPGKVRGNNRQPTTGRMYLDLKKD-----------LEQARRLIAALNGHVLDVTADPPARLE-------VEFAPYQKIPRDKQRKDAKVGTIDRDPEYLAFLEELAKPKEKLPSAEVVADTAEVDVAEKPVA--ALVKYMNERKVHSRDKGKGKSGKFAEKGSAA 272          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: UPI001FB5BFFE (regulator of nonsense transcripts 3A-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB5BFFE)

HSP 1 Score: 59.3 bits (142), Expect = 5.870e-6
Identity = 59/201 (29.35%), Postives = 87/201 (43.28%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQ--KPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSA------DVQVDTRDLEGKDDP-KSPNAILDFLKEREAKKSRESQ 576
            KVV RRLP  M EE+FL A++P+AE          +D   F P   S       S AY+    T  +            V               D K  E  A    MV  APFQK+ K+    KKD+R GTI++D DF AF  +L+ P             ++    R+L+  +   K    +L+F+++++A+K R  +
Sbjct:   43 KVVARRLPPSMTEEEFLEAVSPLAE----------YDYFSFVPADRSLG-AHAFSRAYINFKNTDDVFTFRDRFDSYVFV---------------DKKGNEYPA----MVEYAPFQKIPKRIGNKKKDIRAGTIDQDPDFMAFLESLEKPETVQLPTLEVVLEEIHAHERELKANNGIIKVKTPLLEFIEQKKAEKLRTKE 213          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: UPI0018A6EE1F (regulator of nonsense transcripts 3B-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6EE1F)

HSP 1 Score: 60.5 bits (145), Expect = 9.130e-6
Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 1
Query:    1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQ--KPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSA------DVQVDTRDLEGKDDP-KSPNAILDFLKEREAKKSR 567
            KVV RRLP  M EE+FL A++P+AE          +D   F P   S       S AY+    T  +            V               D K  E  A    MV  APFQK+ K+    KKD+R GTI++D DF AF  +L+ P             ++Q   R+L+  +   K    +L+F+++++A+K R
Sbjct:   43 KVVARRLPPTMTEEEFLEAVSPLAE----------YDYFSFVPADKSLG-AHAFSRAYINFKNTDDVFTFRDRFDSYVFV---------------DKKGNEYPA----MVEYAPFQKIPKRTGNKKKDIRAGTIDQDPDFMAFLESLEKPETVQLPTLEVVLEEIQAHERELKANNGIIKVKTPLLEFIEQKKAEKLR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LCG9_ECTSI1.240e-6860.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7E8_9STRA1.370e-2037.65Smg4_UPF3 domain-containing protein n=1 Tax=Tribon... [more]
A0A061RR23_9CHLO7.710e-930.00Regulator of nonsense transcripts 3 n=2 Tax=Tetras... [more]
A0A8K1FA17_PYTOL9.570e-831.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A423SUN6_PENVA1.120e-630.35Regulator of nonsense transcripts 3A n=2 Tax=Penae... [more]
A0A2D4CDX7_PYTIN3.060e-628.42Smg4_UPF3 domain-containing protein n=1 Tax=Pythiu... [more]
A0A662YFV9_9STRA3.960e-629.57Smg4_UPF3 domain-containing protein n=2 Tax=Nothop... [more]
K3XC97_GLOUD5.220e-630.58Smg4_UPF3 domain-containing protein n=1 Tax=Globis... [more]
UPI001FB5BFFE5.870e-629.35regulator of nonsense transcripts 3A-like n=1 Tax=... [more]
UPI0018A6EE1F9.130e-630.30regulator of nonsense transcripts 3B-like n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18588contigH-elongata_contig18588:295..3115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-26_005010.1
Exons3
Model size2063
Cds size1062
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18588.5038.1prot_H-elongata_contig18588.5038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18588 325..2144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.9900188-UTR-H-elongata_contig18588:294..3241622930062.9900188-UTR-H-elongata_contig18588:294..324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18588 295..324 +
1691679266.571338-UTR-H-elongata_contig18588:294..3241691679266.571338-UTR-H-elongata_contig18588:294..324Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18588 295..324 +
1622930063.0773087-UTR-H-elongata_contig18588:2144..31151622930063.0773087-UTR-H-elongata_contig18588:2144..3115Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18588 2145..3115 +
1691679266.6083298-UTR-H-elongata_contig18588:2144..31151691679266.6083298-UTR-H-elongata_contig18588:2144..3115Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18588 2145..3115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.0240214-CDS-H-elongata_contig18588:324..4501622930063.0240214-CDS-H-elongata_contig18588:324..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 325..450 +
1691679266.579477-CDS-H-elongata_contig18588:324..4501691679266.579477-CDS-H-elongata_contig18588:324..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 325..450 +
1622930063.0440617-CDS-H-elongata_contig18588:979..11741622930063.0440617-CDS-H-elongata_contig18588:979..1174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 980..1174 +
1691679266.5879405-CDS-H-elongata_contig18588:979..11741691679266.5879405-CDS-H-elongata_contig18588:979..1174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 980..1174 +
1622930063.057654-CDS-H-elongata_contig18588:1403..21441622930063.057654-CDS-H-elongata_contig18588:1403..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 1404..2144 +
1691679266.5997145-CDS-H-elongata_contig18588:1403..21441691679266.5997145-CDS-H-elongata_contig18588:1403..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18588 1404..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18588.5038.1

>prot_H-elongata_contig18588.5038.1 ID=prot_H-elongata_contig18588.5038.1|Name=mRNA_H-elongata_contig18588.5038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp
MKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQ
INRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMV
LAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPPPPPPSADVQVD
TRDLEGKDDPKSPNAILDFLKEREAKKSRESQRTATVGSAARGTRRSSSS
SGGSSGSTTAKTTATAAAAAGMSATSSTSATKLKHPPPPPSSSSTAISSA
ETPKIGKSKDEEREPPKAHKSRSGGSGGGGSRRSNSQTSRGSSSAARPPP
SPAAQEQTSESGSEGPILSKEKGGAGSVAGSGGGRRNGGKSRAGGKSTSS
GSR*
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mRNA from alignment at H-elongata_contig18588:295..3115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18588.5038.1 ID=mRNA_H-elongata_contig18588.5038.1|Name=mRNA_H-elongata_contig18588.5038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2821bp|location=Sequence derived from alignment at H-elongata_contig18588:295..3115+ (Himanthalia elongata Himel1 dioecious)
AAGGTCGTTATACGCCGCTTGCCCCACGAAATGAAAGAGGAGGATTTCTT AACTGCTCTGACGCCGGTCGCCGAGGAGGCGAGGTTAGGGGAGCGGGCGA GCTCGTGGGATCTGGTTTACTTCGCCCCGGGAAAGATGAGCAAGAGACGA GGCAGGGTGAGTTTCTCGAACCAAGGGTTATATGTGGGGGGCGTTTTGTT ATTAGATACCCCTAGTGTCGAACTGGCACATCGTTCTTCAAGGAGGATCT CAAGGGGTCTCTCTTTACATTAGCTATAAATCGTTTCGCCTCCCAGCACT CATCAAAGTTTGTCCGCCCTCTCCGGAAAATTGTATGTCTGCGCAAAGCC CTTCTTCAACGTTAGTTCGCCCAGGAAGTAAAAGCACCGGTCAGTAACAT GTGTACCCCAGCTAGAGCGGCGAGAATGCTGACGGTCTGTCGTTTTAAGG CCCCGCGGAGGCTGCTTGTTGTTCGTCGCCAAGTCGCTTGTAAACTTTCG GCGCTATCTGGTATATCTTGACTTGAAAGTATCACGTGAGAACTACGCGA GAAGGTTCGACAATAGCGAACACCCGCCGTCAAACCCGGCGCTATTGAAG GCGTTCGGACACGCGCCCTGAGCTCTCCGCGTCTCTTATAACCTACCGTG CTTGAAAAAAACATATCGGCCTTTGGTTGTGTTAGGTGACAAGCACCGCT TATCTTCAAATCAATCGCACACGCGGTCTGAGCGCCGATCTGAGCATAAT CAAGCTGAGGGCTGCCGTGTTGACGTGCGAGGCCATGACCGGGCCTGCTC CTAAAGACACCAAAGATGGAAAGGCTGGCGAAAGGAGTGCCGACGCAGGC CCAATGGTCTTGGCTGCCCCGTTTCAAAAGGTGTGGATACAAGAGTGGAA TCGTGGGGAAAGGATGGGAGGGTTCGAAACGACAGGTACAGCTTTGTTAA GAAGATATATTTCTAGGGTAAACGGCGAGCGTGAACTGCCATTGGTTTTG CGATAGTATTTATTTTTTACCCGTCTGTTTCAGTTGGTTTGGGATATCGT GGTCCTTGATGCCACCATCCCCACGACTTCCCCCTCACCCCTCACGACGA GACCTGCAGCTGTTCAAGCAGAAGCCCAAGAAGGACGTGCGGGTTGGCAC GATCGAAAAGGACGCCGACTTCAAGGCCTTCTGCGCCGCGCTCCAGTCGC CGCCACCACCCCCACCCAGCGCGGACGTTCAGGTGGACACTCGGGACCTA GAGGGCAAAGATGATCCTAAGTCTCCAAACGCTATTCTAGACTTCCTCAA GGAACGAGAGGCAAAAAAATCAAGGGAGAGCCAACGCACGGCAACCGTCG GTTCTGCTGCCAGGGGAACAAGGAGGTCGTCGAGTTCATCTGGTGGAAGC TCTGGGTCGACGACGGCGAAAACGACGGCGACCGCTGCCGCCGCGGCGGG AATGTCGGCTACTTCATCGACGTCTGCGACAAAATTAAAGCACCCTCCCC CGCCCCCGTCTTCATCGTCAACCGCCATCTCATCGGCGGAAACCCCCAAA ATCGGAAAGTCTAAAGATGAAGAGAGGGAGCCGCCAAAGGCTCACAAAAG TAGAAGTGGCGGTAGCGGTGGGGGCGGTAGTAGGAGATCGAACTCCCAAA CGTCCCGTGGGAGCTCGAGCGCGGCGCGGCCACCCCCCTCTCCTGCTGCC CAGGAACAGACCTCCGAATCAGGAAGCGAAGGACCGATATTGTCCAAGGA AAAAGGTGGTGCTGGAAGCGTCGCAGGAAGCGGTGGCGGCAGAAGAAATG GTGGAAAATCGCGGGCTGGTGGAAAATCGACAAGTAGTGGTAGTAGGTAA AAGGCGGCGTTCTTTTATCGGCAGAAGGTGTGTTTAGCGGTTGACACGTC GATCCTCGTCGAGATGGGAGGCTCGACGCTCCCCGCACCGGAGCCCTCGT TGTATTATTCGTTCATGCGGCGGAGAATTCATGCATTTCGTGTGAAATAA CTACATGTATTTCAGAGTCGTCAATCAGAGATTAGGCGTAAATCGGGAGT GGTACTGGGCAAAAAAAAAGACTGGGAGGGGAAGCGTGCGCTGGCGACGT TAGACGGCTTTCTTTCTACGACCTTCCTTCGCCCCCACTCATGTTCAAGG AGGGTATTACAAAAATCGCTTTTTCGCCCTGGTGGCCAATTTACATTACC CCGCCACGTGTGTGTATGTGCGTGGGATGACTCCTCCGGGCTTCTACACG ACTGCACGCCCTGCCCTGAGGTGGATAGGATGGTAACGCTACGCGAGTAG GTAATAGCGGCGTCGCATGTAATCGTCACTAGATAATGTGTCTTGGTAAT ACCGTCATAAGCGCTGGCCTGGTCACGTACGCGCTGTGTGGGTTGTTCGC TTCTCCCTGAGATCGTAAACCGTGTTTTGCGCCATCAAGTTATCACAGCG CTTGAAATATTGGTTTGAAACCAGCCCACCGATGCTGTTCCTACTGCTGC TGCTTGTACAAGGGCTGGGCTGGTAGCGGCTCGCTTGTGTGGATGACATA TATCGCCGCCACATTGCGCTCCTCCCGTAGGAGCACCTTCTCTGCCTGTC GTATCCTGCCGTAGTGCGCCTTGATAGAATGAAGAGCTAAAAGGCGGGTA AATAGGAATAGTCGGACCGTTATACCCAATGACAGGCTAGGATGGGTTCT CATGTTTAGTCTAGTGGAAATGTGCTTGTGATACCGAGATGCTAGTCTTT CGAGAGACACACCCACCCACCTAGTGTGAGTTCCTTTCCAACCCTCAACA AAGCAACCACCAATTACACGC
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Coding sequence (CDS) from alignment at H-elongata_contig18588:295..3115+

>mRNA_H-elongata_contig18588.5038.1 ID=mRNA_H-elongata_contig18588.5038.1|Name=mRNA_H-elongata_contig18588.5038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2124bp|location=Sequence derived from alignment at H-elongata_contig18588:295..3115+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGAGGAGGATTTCTTAACTGCTCTGACGCCGGTCGCCGAGGAGGC
GAGGTTAGGGGAGCGGGCGAGCTCGTGGGATCTGGTTTACTTCGCCCCGG
GAAAGATGAGCAAGAGACGAGGCAGGATGAAAGAGGAGGATTTCTTAACT
GCTCTGACGCCGGTCGCCGAGGAGGCGAGGTTAGGGGAGCGGGCGAGCTC
GTGGGATCTGGTTTACTTCGCCCCGGGAAAGATGAGCAAGAGACGAGGCA
GGGTGACAAGCACCGCTTATCTTCAAATCAATCGCACACGCGGTCTGAGC
GCCGATCTGAGCATAATCAAGCTGAGGGCTGCCGTGTTGACGTGCGAGGC
CATGACCGGGCCTGCTCCTAAAGACACCAAAGATGGAAAGGCTGGCGAAA
GGAGTGCCGACGCAGGCCCAATGGTCTTGGCTGCCCCGTTTCAAAAGGTG
ACAAGCACCGCTTATCTTCAAATCAATCGCACACGCGGTCTGAGCGCCGA
TCTGAGCATAATCAAGCTGAGGGCTGCCGTGTTGACGTGCGAGGCCATGA
CCGGGCCTGCTCCTAAAGACACCAAAGATGGAAAGGCTGGCGAAAGGAGT
GCCGACGCAGGCCCAATGGTCTTGGCTGCCCCGTTTCAAAAGCTGTTCAA
GCAGAAGCCCAAGAAGGACGTGCGGGTTGGCACGATCGAAAAGGACGCCG
ACTTCAAGGCCTTCTGCGCCGCGCTCCAGTCGCCGCCACCACCCCCACCC
AGCGCGGACGTTCAGGTGGACACTCGGGACCTAGAGGGCAAAGATGATCC
TAAGTCTCCAAACGCTATTCTAGACTTCCTCAAGGAACGAGAGGCAAAAA
AATCAAGGGAGAGCCAACGCACGGCAACCGTCGGTTCTGCTGCCAGGGGA
ACAAGGAGGTCGTCGAGTTCATCTGGTGGAAGCTCTGGGTCGACGACGGC
GAAAACGACGGCGACCGCTGCCGCCGCGGCGGGAATGTCGGCTACTTCAT
CGACGTCTGCGACAAAATTAAAGCACCCTCCCCCGCCCCCGTCTTCATCG
TCAACCGCCATCTCATCGGCGGAAACCCCCAAAATCGGAAAGTCTAAAGA
TGAAGAGAGGGAGCCGCCAAAGGCTCACAAAAGTAGAAGTGGCGGTAGCG
GTGGGGGCGGTAGTAGGAGATCGAACTCCCAAACGTCCCGTGGGAGCTCG
AGCGCGGCGCGGCCACCCCCCTCTCCTGCTGCCCAGGAACAGACCTCCGA
ATCAGGAAGCGAAGGACCGATATTGTCCAAGGAAAAAGGTGGTGCTGGAA
GCGTCGCAGGAAGCGGTGGCGGCAGAAGAAATGGTGGAAAATCGCGGGCT
GGTGGAAAATCGACAAGTAGTGGTAGTAGGTAACTGTTCAAGCAGAAGCC
CAAGAAGGACGTGCGGGTTGGCACGATCGAAAAGGACGCCGACTTCAAGG
CCTTCTGCGCCGCGCTCCAGTCGCCGCCACCACCCCCACCCAGCGCGGAC
GTTCAGGTGGACACTCGGGACCTAGAGGGCAAAGATGATCCTAAGTCTCC
AAACGCTATTCTAGACTTCCTCAAGGAACGAGAGGCAAAAAAATCAAGGG
AGAGCCAACGCACGGCAACCGTCGGTTCTGCTGCCAGGGGAACAAGGAGG
TCGTCGAGTTCATCTGGTGGAAGCTCTGGGTCGACGACGGCGAAAACGAC
GGCGACCGCTGCCGCCGCGGCGGGAATGTCGGCTACTTCATCGACGTCTG
CGACAAAATTAAAGCACCCTCCCCCGCCCCCGTCTTCATCGTCAACCGCC
ATCTCATCGGCGGAAACCCCCAAAATCGGAAAGTCTAAAGATGAAGAGAG
GGAGCCGCCAAAGGCTCACAAAAGTAGAAGTGGCGGTAGCGGTGGGGGCG
GTAGTAGGAGATCGAACTCCCAAACGTCCCGTGGGAGCTCGAGCGCGGCG
CGGCCACCCCCCTCTCCTGCTGCCCAGGAACAGACCTCCGAATCAGGAAG
CGAAGGACCGATATTGTCCAAGGAAAAAGGTGGTGCTGGAAGCGTCGCAG
GAAGCGGTGGCGGCAGAAGAAATGGTGGAAAATCGCGGGCTGGTGGAAAA
TCGACAAGTAGTGGTAGTAGGTAA
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