mRNA_H-elongata_contig185790.5035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185790.5035.1
Unique NamemRNA_H-elongata_contig185790.5035.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5JRE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.600e-14
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNT+SP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:   34 ARWFHKLLNTRSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5KAX2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.530e-13
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKS  ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:    5 ARWFHKLLNTKSATIDLHATDRVQQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 69
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5JTI2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.180e-13
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    4 RWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            RWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:    3 RWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 66
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5JP69_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP69_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.450e-13
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKSP ++ +  + + +WP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:   34 ARWFLKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.520e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:   34 ARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.530e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:  332 ARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 396
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5K3M1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.600e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:  440 ARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 504
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.600e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:   34 ARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.640e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:  312 ARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 376
[Close]
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.650e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLANEKAVGPDGVSVELLK 195
            ARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +A+R +AN KAVGPD +  EL+K
Sbjct:   97 ARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185790.5035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE2_9PHAE3.600e-1447.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KAX2_9PHAE1.530e-1347.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTI2_9PHAE3.180e-1348.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JP69_9PHAE5.450e-1346.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KE31_9PHAE6.520e-1349.23Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE6.530e-1349.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M1_9PHAE6.600e-1349.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKB2_9PHAE6.600e-1349.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE6.640e-1349.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE6.650e-1349.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185790contigH-elongata_contig185790:5..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.4207313-CDS-H-elongata_contig185790:4..1991622930062.4207313-CDS-H-elongata_contig185790:4..199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185790 5..199 -
1691679266.2686098-CDS-H-elongata_contig185790:4..1991691679266.2686098-CDS-H-elongata_contig185790:4..199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185790 5..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185790.5035.1prot_H-elongata_contig185790.5035.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185790 5..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185790.5035.1

>prot_H-elongata_contig185790.5035.1 ID=prot_H-elongata_contig185790.5035.1|Name=mRNA_H-elongata_contig185790.5035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
ARWFQTLLNTKSPALEPNITEGLNQWPEKTPLGIQPTMQELTDAIRSLAN
EKAVGPDGVSVELLK
back to top

mRNA from alignment at H-elongata_contig185790:5..199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185790.5035.1 ID=mRNA_H-elongata_contig185790.5035.1|Name=mRNA_H-elongata_contig185790.5035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig185790:5..199- (Himanthalia elongata Himel1 dioecious)
GCCCGTTGGTTCCAAACCCTCTTAAACACCAAATCGCCGGCGCTCGAGCC
GAACATCACTGAAGGCCTCAACCAGTGGCCGGAGAAAACGCCGCTGGGAA
TTCAGCCCACGATGCAGGAGTTGACAGACGCCATCCGCTCGTTAGCAAAC
GAAAAGGCTGTTGGACCAGACGGAGTCTCGGTTGAACTGCTCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig185790:5..199-

>mRNA_H-elongata_contig185790.5035.1 ID=mRNA_H-elongata_contig185790.5035.1|Name=mRNA_H-elongata_contig185790.5035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig185790:5..199- (Himanthalia elongata Himel1 dioecious)
GCCCGTTGGTTCCAAACCCTCTTAAACACCAAATCGCCGGCGCTCGAGCC
GAACATCACTGAAGGCCTCAACCAGTGGCCGGAGAAAACGCCGCTGGGAA
TTCAGCCCACGATGCAGGAGTTGACAGACGCCATCCGCTCGTTAGCAAAC
GAAAAGGCTGTTGGACCAGACGGAGTCTCGGTTGAACTGCTCAAGGCCCG
TTGGTTCCAAACCCTCTTAAACACCAAATCGCCGGCGCTCGAGCCGAACA
TCACTGAAGGCCTCAACCAGTGGCCGGAGAAAACGCCGCTGGGAATTCAG
CCCACGATGCAGGAGTTGACAGACGCCATCCGCTCGTTAGCAAACGAAAA
GGCTGTTGGACCAGACGGAGTCTCGGTTGAACTGCTCAAG
back to top