mRNA_H-elongata_contig185664.5028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185664.5028.1
Unique NamemRNA_H-elongata_contig185664.5028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.270e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:   10 AKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 342
            A  +CD I +QETRR  +  I     GYV+  SG   G   + G+ GVG+A++E++  ++G  G   E IS RL+ VR+        TF+VGYAPTETA          K  FW  L
Sbjct:    8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTAL 122
[Close]
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5L4L0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.530e-12
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 342
            CD I +QETRR+ + +I     G V+  SG   G   + G+ GVG+A++E++  ++G +G   E IS RL+ VR+        TF+VGYAPTETA T        K  FW  L
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GDVIIWSGALAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARTTAGGDVNAKDSFWTAL 122
[Close]
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.430e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:   10 AKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 342
            A  +CD I +QETRR  +  I     GYV+  SG   G   + G+ GVG+A++E++  ++G  G   E IS RL+ VR+        TF+VGYAPTETA          K  FW  L
Sbjct:    8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTAL 122
[Close]
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.480e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:   10 AKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 342
            A  +CD I +QETRR  +  I     GYV+  SG   G   + G+ GVG+A++E++  ++G  G   E IS RL+ VR+        TF+VGYAPTETA          K  FW  L
Sbjct:  120 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTAL 234
[Close]
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-9
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:   37 IQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 342
            +QETRR  + +I     GYV+  SG   G   + G+ GVG+A++E++  ++G +G   E IS RL+ VR+        TF+VGYAP ETA T        K  FW  L
Sbjct:   12 LQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPMETARTTAGGDVNAKDSFWTAL 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KP87_9PHAE2.270e-1239.32Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L4L0_9PHAE2.530e-1239.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KC90_9PHAE9.430e-1239.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE9.480e-1239.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6H7_9PHAE1.370e-938.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185664contigH-elongata_contig185664:868..1218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.6700945-CDS-H-elongata_contig185664:867..12181622930061.6700945-CDS-H-elongata_contig185664:867..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185664 868..1218 +
1691679266.0270436-CDS-H-elongata_contig185664:867..12181691679266.0270436-CDS-H-elongata_contig185664:867..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185664 868..1218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185664.5028.1prot_H-elongata_contig185664.5028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185664 868..1218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185664.5028.1

>prot_H-elongata_contig185664.5028.1 ID=prot_H-elongata_contig185664.5028.1|Name=mRNA_H-elongata_contig185664.5028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MFAAKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILG
VGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTE
TAATYHKSKFWKELHNT
back to top

mRNA from alignment at H-elongata_contig185664:868..1218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185664.5028.1 ID=mRNA_H-elongata_contig185664.5028.1|Name=mRNA_H-elongata_contig185664.5028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig185664:868..1218+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCG
CCGCGATGAAAGGACAACCATCCAAGCACCAGCCACTGGTTATGTCATGC
ACTGCAGCGGTCATTGCGATGGTGATGGAGGTGAGCCCGGGATACTCGGA
GTTGGTCTGGCTGTCAGGGAGTCTATTGCTCGCGCACTTGGCCCAGATGG
CATTGTGCCGGAACACATCAGTGCGCGGCTGCTGACGGTGAGGGTGATTT
TCAAACACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCGACTGAA
ACAGCAGCCACCTATCACAAGTCTAAGTTCTGGAAGGAACTTCACAACAC
T
back to top

Coding sequence (CDS) from alignment at H-elongata_contig185664:868..1218+

>mRNA_H-elongata_contig185664.5028.1 ID=mRNA_H-elongata_contig185664.5028.1|Name=mRNA_H-elongata_contig185664.5028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig185664:868..1218+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCG
CCGCGATGAAAGGACAACCATCCAAGCACCAGCCACTGGTTATGTCATGC
ACTGCAGCGGTCATTGCGATGGTGATGGAGGTGAGCCCGGGATACTCGGA
GTTGGTCTGGCTGTCAGGGAGTCTATTGCTCGCGCACTTGGCCCAGATGG
CATTGTGCCGGAACACATCAGTGCGCGGCTGCTGACGGTGAGGGTGATTT
TCAAACACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCGACTGAA
ACAGCAGCCACCTATCACAAGTCTAAGTTCTGGAAGGAACTTCACAACAC
TATGTTCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTC
GCCGCGATGAAAGGACAACCATCCAAGCACCAGCCACTGGTTATGTCATG
CACTGCAGCGGTCATTGCGATGGTGATGGAGGTGAGCCCGGGATACTCGG
AGTTGGTCTGGCTGTCAGGGAGTCTATTGCTCGCGCACTTGGCCCAGATG
GCATTGTGCCGGAACACATCAGTGCGCGGCTGCTGACGGTGAGGGTGATT
TTCAAACACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCGACTGA
AACAGCAGCCACCTATCACAAGTCTAAGTTCTGGAAGGAACTTCACAACA
CT
back to top