mRNA_H-elongata_contig185601.5022.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A804HMU3_MUSAM (DUF659 domain-containing protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804HMU3_MUSAM) HSP 1 Score: 63.2 bits (152), Expect = 1.190e-9 Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVI 213
W CAAH +D++LK++ LD + R + KF+ NHH A+ +++ N ++ P TRFATN I
Sbjct: 218 WTPCAAHCIDIMLKDIGELDAVKKCVARAQSITKFIYNHHWVHALMQNYVNGEILRPGITRFATNFI 284
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A426WWC4_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426WWC4_ENSVE) HSP 1 Score: 59.3 bits (142), Expect = 2.700e-8 Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVI 213
W AAH +DL+LK++ LD+ + R + KF+ NHH ++ + + N ++ P TRFATN I
Sbjct: 85 WTSRAAHCIDLMLKDIGELDMVKKCVARAQSITKFIYNHHWVHSLMQKYVNDEILRPGVTRFATNFI 151
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI) HSP 1 Score: 58.5 bits (140), Expect = 5.060e-8 Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 4 RMTWMKCA---AHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
R W+ C+ AH +DL L+++ + + TLK +VKF+ NHH A++ H++L L+ P TRFAT+ I + +L+
Sbjct: 283 RFPWITCSGCVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHSDLELLKPGDTRFATSFITLERLLE 362
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: UPI00155AACC1 (uncharacterized protein LOC117930350 n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155AACC1) HSP 1 Score: 57.0 bits (136), Expect = 1.480e-7 Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 4 RMTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHT-NLRLITPCATRFAT 204
++ W CAAH +DL LK++ L++ A TL R +VVKF+ H ++ + T N L+ P TRFAT
Sbjct: 85 KLWWTPCAAHCIDLTLKDIGKLNVHATTLSRARQVVKFIYGHTWVFSLMRTFTKNHDLLHPAITRFAT 152
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: UPI000511298E (uncharacterized protein LOC103958368 isoform X1 n=3 Tax=Maleae TaxID=721813 RepID=UPI000511298E) HSP 1 Score: 56.6 bits (135), Expect = 2.470e-7 Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 1
Query: 4 RMTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTN-LRLITPCATRFATNVIVVMYMLK 234
++ W +CAAH +DL LK++ + F DTLK V K++ H A+ TN ++ P TRFAT+ + + + K
Sbjct: 316 KLWWTQCAAHCIDLTLKDIAKMKWFDDTLKHAKCVTKYLYGHQWVLALMRKFTNNTEILRPAVTRFATSFLTLQILQK 393
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843V1P5_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V1P5_COLES) HSP 1 Score: 56.6 bits (135), Expect = 2.490e-7 Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1
Query: 13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
W CAAH VDL+LK + L ++ K+ +++ NHH A T L+ P TRFATN I + +LK
Sbjct: 366 WTPCAAHCVDLMLKEIGTLRPVKTVVEAGQKITRYIYNHHVVLAWMRESTGGELLRPAITRFATNFIALQSLLK 439
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843VI85_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VI85_COLES) HSP 1 Score: 55.5 bits (132), Expect = 6.390e-7 Identity = 28/74 (37.84%), Postives = 38/74 (51.35%), Query Frame = 1
Query: 13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
W CAAH VDL+LK + L + K+ +F+ NHH A T L+ P TRFATN + + +LK
Sbjct: 442 WTPCAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLK 515
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843TN79_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TN79_COLES) HSP 1 Score: 54.3 bits (129), Expect = 1.630e-6 Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 1
Query: 13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
W CAAH VDL+LK + L + K+ F+ NHH A T L+ P TRFATN + + +LK
Sbjct: 322 WTPCAAHCVDLMLKEIGTLQPVKMVVDAGQKITHFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLK 395
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A388KCU7_CHABU (DUF659 domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KCU7_CHABU) HSP 1 Score: 53.9 bits (128), Expect = 2.180e-6 Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIY----ESHTNLRLITPCATRFA 201
W+ CAAH ++LL+K++ LD ++R +VKF++ HH +++Y E L LI P RFA
Sbjct: 384 WVPCAAHCLNLLMKDVCELDXVKQVVQRTKMMVKFIRKHHNTNSLYTRCSELSRELTLILPTEVRFA 450
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843TB08_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TB08_COLES) HSP 1 Score: 53.9 bits (128), Expect = 2.210e-6 Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 1
Query: 7 MTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
+ W CAAH VDL+LK + L + K+ +F+ NHH A T L+ P T FATN + + +LK
Sbjct: 83 LCWTPCAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPAVTCFATNFVALQSLLK 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig185601.5022.1 >prot_H-elongata_contig185601.5022.1 ID=prot_H-elongata_contig185601.5022.1|Name=mRNA_H-elongata_contig185601.5022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESback to top mRNA from alignment at H-elongata_contig185601:210..476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig185601.5022.1 ID=mRNA_H-elongata_contig185601.5022.1|Name=mRNA_H-elongata_contig185601.5022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig185601:210..476+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig185601:210..476+ >mRNA_H-elongata_contig185601.5022.1 ID=mRNA_H-elongata_contig185601.5022.1|Name=mRNA_H-elongata_contig185601.5022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig185601:210..476+ (Himanthalia elongata Himel1 dioecious)back to top |