mRNA_H-elongata_contig185454.5013.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BDE4E (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BDE4E) HSP 1 Score: 95.5 bits (236), Expect = 2.850e-22 Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
LS + SPQTD EVEEM QIPY+E VGAL++ +T TRPDIS+A Q+AKFN NP HW+A ++ +YL TR+ GI +
Sbjct: 17 LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILF 94
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0) HSP 1 Score: 93.6 bits (231), Expect = 3.250e-22 Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 16 SPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
SPQTD EVEEM QIPY+E VGAL++ +T TRPDIS+A Q+AKFN NP HW+A ++ +YL TR+ GI +
Sbjct: 2 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFF 74
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB) HSP 1 Score: 95.5 bits (236), Expect = 1.850e-21 Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
LS + SPQTD EVEEM QIPY+E VGAL++ +T TRPDIS+A Q+AKFN NP HW+A ++ +YL TR+ GI +
Sbjct: 260 LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILF 337
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE) HSP 1 Score: 90.5 bits (223), Expect = 1.900e-19 Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
LSKS SPQT EVEEM +IPY VG+L++ ATMTRPDI++ A LA+FN NP HW+A + L+YL T D+ + Y
Sbjct: 366 LSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEY 443
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A284S2Y9_ARMOS (Uncharacterized protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S2Y9_ARMOS) HSP 1 Score: 89.4 bits (220), Expect = 4.980e-19 Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
+S+ P T ++V +M +PYRE++G L+W +T TRPD++F L++F DNP HW AA++ LQYL TR LG+TY
Sbjct: 1193 ISREQCPNTPSDVADMRDVPYRELIGGLIWLSTATRPDLAFTVCVLSRFLDNPGRPHWNAAKRVLQYLKGTRTLGLTY 1270
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A8H7F248_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F248_AGABI) HSP 1 Score: 89.0 bits (219), Expect = 6.810e-19 Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
LS DSP+TDAE EM IPYRE++G+LMW TRPD+SFA L++F +NP HW A + L Y+ T GITY
Sbjct: 1213 LSIEDSPKTDAEKAEMANIPYREVLGSLMWLQVATRPDLSFAVNMLSRFANNPGRAHWEAMKHTLAYVKSTTHYGITY 1290
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: M2QFN1_CERS8 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2QFN1_CERS8) HSP 1 Score: 88.2 bits (217), Expect = 7.730e-19 Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGI 228
L+K D P+ E ++M + PYRE++GAL W + ++RPDISFA LA+FN +P P HWRAA++ LQYL TRD +
Sbjct: 150 LTKDDGPKNAQEADDMKRRPYRELLGALTWISVISRPDISFAVNNLAQFNADPGPKHWRAAKRILQYLTGTRDYRL 225
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31) HSP 1 Score: 85.9 bits (211), Expect = 1.270e-18 Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
L+ S SPQ E EEM IPY+E VGAL++ +T TRPDIS+A Q+AKF+ NP HW+A ++ ++Y+ TR GI Y
Sbjct: 17 LTSSMSPQQQKEKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILY 94
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A4S4KZ61_9AGAM (Uncharacterized protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KZ61_9AGAM) HSP 1 Score: 84.0 bits (206), Expect = 1.460e-18 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
LSK+ +P+ E+ M +PYR++VGALM+ A TRPDIS+A LA+F+ NP P HW+AA+ +YL T+D+ +TY
Sbjct: 10 LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTY 87
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM) HSP 1 Score: 84.0 bits (206), Expect = 2.120e-18 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
LSK+ +P+ E+ M +PYR++VGALM+ A TRPDIS+A LA+F+ NP P HW+AA+ +YL T+D+ +TY
Sbjct: 80 LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTY 157 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig185454.5013.1 >prot_H-elongata_contig185454.5013.1 ID=prot_H-elongata_contig185454.5013.1|Name=mRNA_H-elongata_contig185454.5013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNback to top mRNA from alignment at H-elongata_contig185454:900..1133- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig185454.5013.1 ID=mRNA_H-elongata_contig185454.5013.1|Name=mRNA_H-elongata_contig185454.5013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig185454:900..1133- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig185454:900..1133- >mRNA_H-elongata_contig185454.5013.1 ID=mRNA_H-elongata_contig185454.5013.1|Name=mRNA_H-elongata_contig185454.5013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig185454:900..1133- (Himanthalia elongata Himel1 dioecious)back to top |