mRNA_H-elongata_contig18532.5004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18532.5004.1
Unique NamemRNA_H-elongata_contig18532.5004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: D8LQK0_ECTSI (Deoxyribodipyrimidine photo-lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK0_ECTSI)

HSP 1 Score: 650 bits (1678), Expect = 9.930e-225
Identity = 310/420 (73.81%), Postives = 347/420 (82.62%), Query Frame = 1
Query:    1 QTTLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIHARPSFFGEFPELGDNPLETGLPKATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKTAKHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAVEAGGTPAPVKRK 1260
            +TTLRYA F+LKGL ETE  LR K+IPF LL+AAEP DVVP  AKEL A A+VTDM PLR P R  +EVA+ELNK+G  TPLFQVDAHNVVPVW TS+ +E MARTIR KIHARP F G  PEL  NP  T LP ATDW  AQ SLDLDRSVPE++WLKPGAK A  NL++FI+ R+ GFAD SN+PNEDV SHMSPYFN GQMSAQAAV+RVK ++ +PDGVKAFVEQG+VRRELSDNFCFYN           + YD+LSGAA WARE+L  H+ND R+WTYS+Q+LE+A+TH+DLWNAAQLQ+V DGKMHNFLRMYWAKKILEWSP+P DALERC+F NDKYELDGRDPNGFTGCAWSVMG+HDMGWKERE+FGKIRYMNY GC RKFDVQ FVSKY GA  AAV AGGT AP KRK
Sbjct:   76 KTTLRYAGFMLKGLEETEGDLRKKKIPFHLLQAAEPRDVVPAFAKELGALAIVTDMCPLRDPTRRAREVAEELNKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIHARPDFLGAIPELSPNPQGTKLPAATDWKAAQTSLDLDRSVPEISWLKPGAKGASDNLQSFIETRMKGFADLSNNPNEDVCSHMSPYFNLGQMSAQAAVMRVKASRRHPDGVKAFVEQGVVRRELSDNFCFYN-----------DNYDNLSGAAGWARESLEAHANDQREWTYSVQELEEAKTHEDLWNAAQLQLVRDGKMHNFLRMYWAKKILEWSPSPHDALERCLFFNDKYELDGRDPNGFTGCAWSVMGIHDMGWKEREVFGKIRYMNYAGCKRKFDVQEFVSKYAGAGEAAVAAGGTVAPAKRK 484          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A0A835Z6D6_9STRA (Deoxyribodipyrimidine photo-lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D6_9STRA)

HSP 1 Score: 483 bits (1242), Expect = 7.460e-159
Identity = 233/417 (55.88%), Postives = 292/417 (70.02%), Query Frame = 1
Query:    7 TLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIHARPSFFGEFPELGDNPLETGLPKATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKTAKHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAVEAGGTPAPVKR 1257
            T+R+  F+L+GL ETE  LR+KR+PF LL+ AEP D VP  A+   A AVV DMSPLR PR W + VA +L  A Q  P+FQVDAHN+VPVWT S+ +E  ART+R KI    +   + P L  N   T LP   DW  A+++L++DRSV EV    PGA A R+ L+ FID RL  FA   NDPN    S +SPY + GQ+S Q AVL V+ +K   +  K++VE+ +VRRELSDNFCFYN +           YD L+ AA+WAR++LA+H++D R+ TY+  DLE  RTHDDLWNAAQ+QMV +GKMH FLRMYWAKKILEW+P+P +AL   I+LND+YELDGRDPNG+ G AWS+MG+HDMGW ER IFGKIRYMNY GCMRKF+V  FV++YP A +    AGG PA  K+
Sbjct:  107 TIRHFGFMLRGLEETEADLRAKRVPFHLLRGAEPADTVPEFARAQGAVAVVCDMSPLRVPRAWTEGVAAKL--AEQGVPVFQVDAHNIVPVWTVSDKQETGARTLRPKIDRLLTMLTDVPPLAPNAEGTALPPRPDWAAARETLEVDRSVQEVKTFTPGAAAGRAKLQDFIDNRLKLFATGRNDPNVHASSDLSPYLHFGQLSVQRAVLEVRASKKSSESTKSYVEEAVVRRELSDNFCFYNAD-----------YDSLAAAANWARDSLALHASDAREHTYTRDDLEAGRTHDDLWNAAQIQMVQEGKMHGFLRMYWAKKILEWTPSPAEALATAIYLNDRYELDGRDPNGYVGIAWSIMGIHDMGWTERPIFGKIRYMNYAGCMRKFNVASFVARYPAAVANCKAAGGEPAKPKK 510          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A0A7S3XZZ2_HETAK (Deoxyribodipyrimidine photo-lyase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZZ2_HETAK)

HSP 1 Score: 459 bits (1180), Expect = 8.720e-149
Identity = 235/436 (53.90%), Postives = 292/436 (66.97%), Query Frame = 1
Query:   10 LRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQ-NTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIHA-RPSFFGEFPELGDNPLETGLPKAT---DWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDK-RLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKT-AKHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAVEAGGTPAPVKRKANNKGKGDRSIK 1296
            +R+  F+L+G+AE E  LR K +PF LL+   P +V+PG A+E  A+AVVTDMSPLR P  W ++ A  L+  G    PL QVDAHN+VPVW  S  +E  ARTIRSKIH   P F   FPEL  N    G P A    DW     SL +DR+VPEVTWL+PGA AAR+ L  F D  RL  FAD+ NDPN   +S++SPYF+ GQ+SAQAA+L VK  +  +  GV AFVE+ +VRRELSDNFCFY              YD L G +DWARE+L +H+ D R+  Y L +L + RTHDDLWNAAQ+QMV +GKMH FLRMYWAKKILEW+P P  AL+   +LND++ LDGRDPNG+ G AWS+MG+HDMGWKER IFGKIRYMNY GC RKF++  FV++Y  +  A+  A  T    K+    K +G +S K
Sbjct:   90 IRHFGFMLRGMAEVEAELREKNVPFHLLRGWAP-EVLPGFAQEAGAAAVVTDMSPLRVPAGWARDAAAALDGLGAAGPPLHQVDAHNIVPVWVASPKQEYAARTIRSKIHGVLPEFLVPFPELPANTAAAGAPAAPPPEDWDAVIDSLGVDRAVPEVTWLRPGAAAARATLADFCDGGRLKVFADRRNDPNAHALSNLSPYFHYGQLSAQAAILEVKKRSSRHSAGVAAFVEEAVVRRELSDNFCFYQ-----------EHYDSLEGCSDWARESLELHAADPREHLYGLDELAEGRTHDDLWNAAQVQMVTEGKMHGFLRMYWAKKILEWTPDPATALQHANYLNDRFSLDGRDPNGYVGTAWSIMGIHDMGWKERPIFGKIRYMNYAGCKRKFNIPAFVARYSSSMPASTAA--TTMTTKKAVKVKTEGGQSSK 511          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A0A4D9CZD5_9STRA (Deoxyribodipyrimidine photo-lyase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZD5_9STRA)

HSP 1 Score: 447 bits (1149), Expect = 1.360e-144
Identity = 230/441 (52.15%), Postives = 285/441 (64.63%), Query Frame = 1
Query:    7 TLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIH-ARPSFFGEFPELGDNPLETGL----------PKATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKTAKHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAVEAGGT-------PAPVKRKANNKG 1275
            TLR   ++L+GL E E  L+ K IP  LL+   P D+VP L  EL ASAV+TD SPLR P    Q VA  L+ AG+  PLFQVDAHN+VPVW  S   E+ ARTIR KIH   P +F  FP  G  P +             P+   + +    L LDR V E+ WL+PGA+A   NL+TF++K L  FA+K NDP E  IS+MSPYFN GQ+S QA +L+VK  K Y D + AF+E+G+VRRELSDNFCFY  E           YD L+ AA WA+E+L +H+ND RQ+ Y+ + LE   THD LWNA+QLQ+V +GK+H FLRMYWAKKILEW+  P +AL   + LND++ LDGRDPNGF G  WSVMGVHDMGW ER I GKIRYMNY GC+RKFDV +F ++YP A  AA +   T       P P+K  A  +G
Sbjct:  105 TLRAYGWMLRGLQEVEAALKRKHIPLYLLQEGPPEDMVPALVCELQASAVITDFSPLRGPLADAQAVAAALDAAGR--PLFQVDAHNIVPVWQASPKLEVGARTIRKKIHDLLPKYFTPFPAEGLAPNDAAAVRALPGRSAPPEGFGYEKVLGRLYLDRGVKEIDWLQPGARAGWENLDTFLEKGLKIFAEKRNDPTEPAISNMSPYFNFGQVSVQAVMLKVKAVKRYHDSIAAFIEEGVVRRELSDNFCFYQPE-----------YDSLAAAAGWAQESLRVHTNDRRQFCYTAEALEAGLTHDQLWNASQLQLVQEGKLHGFLRMYWAKKILEWTATPAEALALALRLNDRFSLDGRDPNGFVGVGWSVMGVHDMGWTERRITGKIRYMNYAGCLRKFDVAKFCARYPAAIEAAQKVQSTIQPNGEGPVPMKAAAGKEG 532          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A9V1G3_MONBE (Deoxyribodipyrimidine photo-lyase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V1G3_MONBE)

HSP 1 Score: 448 bits (1152), Expect = 9.670e-141
Identity = 222/414 (53.62%), Postives = 282/414 (68.12%), Query Frame = 1
Query:    1 QTTLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIHAR-PSFFGEFPELGDNPLETGLPKATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKTAKH--YPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAA-SAAVEA 1230
            + T+R   F+L GL   E  LR K IPF LL      DV+P  A+E  A AVV DMSPLR P  WV+E   +L     N PL+QVDAHN+VPVW  S  +E  ARTIR+KIH +  +    FPEL  N     LP   DW +A++SL+++  V EV WLKPG +     LE FI++RLH +AD  NDPN D +S++SPY++ GQ+S Q  VL +++ +   Y +GVKA++E+ +VRRELSDNFCFYN           ++YD + GA+ WA+ETL +HS D R+  Y+ + LE A T DDLWNA+QLQ+V +GKMH FLRMYWAKKILEW+ +PE ALE  I+LNDKYELDGRDPNG+ GC WS+ G+HD GW ER +FGKIRYMNY GC RKFD+  FV +YP AA +AA EA
Sbjct:  450 EATIRQFGFMLDGLQVVETHLRKKHIPFHLLTGYAK-DVLPKFAEEQEACAVVCDMSPLRVPMAWVKETGSKLKD--MNVPLYQVDAHNIVPVWHASPKQEYAARTIRNKIHQKLDTCLQPFPELESNSNSVQLPDTVDWKKARESLEINWDVKEVDWLKPGYEGGMKMLEEFINERLHRYADDRNDPNLDALSNLSPYYHFGQISVQRVVLELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYN-----------HRYDSVEGASAWAQETLDVHSKDKREHLYTRKQLENAETADDLWNASQLQLVQEGKMHGFLRMYWAKKILEWTESPEKALEDAIYLNDKYELDGRDPNGYVGCMWSICGIHDQGWGERPVFGKIRYMNYKGCKRKFDIAAFVKRYPPAAKNAAREA 849          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: F2U8C8_SALR5 (Deoxyribodipyrimidine photo-lyase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8C8_SALR5)

HSP 1 Score: 435 bits (1118), Expect = 1.900e-140
Identity = 225/452 (49.78%), Postives = 294/452 (65.04%), Query Frame = 1
Query:    7 TLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIHAR-PSFFGEFPELGDNPLET----GLPKATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKT--AKHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAVEAGGTPA--PVKRKANNKGK------GDRSIKKFLKTKA 1317
            T+R+  F+L+GL +T + L  K +PF LL+ +     VP  A +  A+AV+ DMSPLR P RWV++V + L    QN PL QVDAHN+VPVW TS+ +E  ARTIR KIH    ++   FPEL  N  +T     LP   D       L++D SV EV W++PG +   +  E F   R   F +  N+PNEDV S++SPYF+ GQ+SA A VL +K+  +K    GV+ F+E+ +VRRELSDNFCFYN            +YD + GAA WAR+TL  H +D R++ Y+ + LE+ +THDDLWNAAQLQMV  GKMH FLRMYWAKKILEW+  PEDAL+  +FLND+YELDGRDPNG+ GC WS+ G+HD GW ER +FGKIRYMNY GC RKFDV RFVS++P A + A E  G  +  P  ++A+++ K      G  + K+  KT A
Sbjct:   75 TIRHYGFMLRGLHQTAKHLHEKLVPFHLLQGSA-ATTVPAFAAQHEAAAVICDMSPLRVPLRWVKDVGQALE--AQNVPLLQVDAHNIVPVWVTSQKQEYAARTIRPKIHKHLDTYLQPFPELDANDKDTLGDMELPPVFDLEAQFDMLEVDTSVKEVDWIEPGYEQGMAAAEAFGRDRAKKFDELRNNPNEDVCSNLSPYFHFGQISAAAVVLLLKSKYSKKAAKGVQTFIEEAVVRRELSDNFCFYN-----------RRYDSIDGAAVWARDTLDTHRHDKREYVYTREQLEQGKTHDDLWNAAQLQMVERGKMHGFLRMYWAKKILEWTATPEDALQTALFLNDRYELDGRDPNGYVGCMWSIAGIHDQGWAERAVFGKIRYMNYKGCKRKFDVARFVSRFPQAVANAAEVNGQASSQPTLKQASSRSKRGAGGAGANTAKRAKKTSA 512          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A0A7S2FJK3_9STRA (Deoxyribodipyrimidine photo-lyase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FJK3_9STRA)

HSP 1 Score: 434 bits (1116), Expect = 1.810e-138
Identity = 226/445 (50.79%), Postives = 292/445 (65.62%), Query Frame = 1
Query:    7 TLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIHAR-PSFFGEFPE-LGDNPLETGLP-----------------KATDWTRAQKSLD-LDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPN-EDVISHMSPYFNTGQMSAQAAVLRVKT-AKHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAVEAGGTP-APVKRKANNK 1272
            TLR+  F+L+GLAET+  L +K +P  LL+  +P   +   AK+  A+ V TDM+PLR P +W  +VA++L++   + PL QVDAHN+VPVW TSE +E+ ARTIR K+H   P +    P  L  N +E  +P                 ++TDW     S++ LD SV  V W  PGA AA S L  F + RL  FADK NDP   D IS +SP+ + GQ+SAQ AV+ VK   + +   V ++VE+ +VRRELS+NFC+YN +           YD + GAA+WAR +L +H++D R++ Y    LE   THDDLWNAAQLQ+   GKMH FLRMYWAKKILEW+P+P++AL   I+LND+YELDGRDPNG+ GC WS+ GVHDMGWKERE+FGKIR+MNY GC+RKF V  FVS+YP AAS AVEAGG P AP K K   K
Sbjct:  141 TLRHFDFMLQGLAETDRALDAKGVPLYLLRGEDPAASIAAFAKQEGAAVVFTDMAPLRLPMKWAWDVAQQLDQ--DDIPLVQVDAHNIVPVWVTSEKQEVGARTIRKKVHTHLPRYLANIPPPLAPNDMEF-IPTYQSSRMISEVDDGAKRRSTDWGNVLTSMEGLDTSVGPVGWASPGAAAASSQLRLFCESRLSRFADKRNDPCCLDAISDLSPWLHFGQLSAQRAVIEVKKRGRSHSAAVASYVEEAVVRRELSENFCWYNAQ-----------YDSMDGAAEWARASLELHASDPREYIYDEHALESGCTHDDLWNAAQLQLTETGKMHGFLRMYWAKKILEWTPSPQEALRMAIYLNDRYELDGRDPNGYVGCMWSICGVHDMGWKEREVFGKIRFMNYKGCLRKFPVFEFVSRYPKAASNAVEAGGVPTAPKKGKKRKK 571          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A0A812HK27_9DINO (Deoxyribodipyrimidine photo-lyase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812HK27_9DINO)

HSP 1 Score: 427 bits (1099), Expect = 9.610e-138
Identity = 222/418 (53.11%), Postives = 277/418 (66.27%), Query Frame = 1
Query:    7 TLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKI-HARPSFFGEFPELGDNP--LETGLPKATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKT---AKHYPDGVK----AFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAVEA 1230
            TLR   F+LKGL E    L SK+IPF L +  +  D VP +  +L A  VV DMSPLR P  W ++VA       +  P+ QVDAHNVVPVW  S+ +E  ARTIR KI     ++  EFP +  +P   +  + +  DW  A+ SL +D SV  V  + PGA A  + LE F  KRL  + +  N+PNE+ +S +SP+ + GQ+SAQ   LRV+    AK    G K    AF+E+ IVRRELSDNFCFYN            +YD L GAA WA++TL  H+ D R+  YS ++LE A+THDDLWNAAQLQMV +GKMH FLRMYWAKKILEWSP+P++AL+RCI+LND+YELDGRDPNG+ GC WSV GVHDMGWKERE+FGKIR+MNY GC RKFDV  FV+K+PGA     EA
Sbjct:   80 TLRQYDFLLKGLREVAADLESKQIPFHL-QLGKAADKVPAVVDQLGAQMVVCDMSPLRVPSEWARDVANLCQ--AKEVPVVQVDAHNVVPVWAASDKQETAARTIRKKIMQPLGTYLTEFPSVDRHPHKFKGEISQPIDWEGAENSLQVDTSVRPVAGIVPGAAAGHAALENFC-KRLSRYDEHRNNPNENALSGLSPWLHFGQISAQRCALRVRRIGEAKSATAGEKKSCEAFIEESIVRRELSDNFCFYNA-----------RYDSLEGAAGWAQQTLKDHAKDKREHLYSREELENAKTHDDLWNAAQLQMVREGKMHGFLRMYWAKKILEWSPSPQEALDRCIWLNDRYELDGRDPNGYVGCMWSVCGVHDMGWKEREVFGKIRFMNYAGCKRKFDVAGFVAKFPGAVPHGAEA 482          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A0A7M4F2Y3_CROPO (Deoxyribodipyrimidine photo-lyase n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4F2Y3_CROPO)

HSP 1 Score: 424 bits (1089), Expect = 3.490e-136
Identity = 204/403 (50.62%), Postives = 269/403 (66.75%), Query Frame = 1
Query:    1 QTTLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKIHAR-PSFFGEFPELGDNPLETGLP-KATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKTAK-HYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKY 1200
            + T+R+  F+LKGL E  E      IPF LL+     DV+PG         VVTD SPLR P +WV++V + L    Q+ PL QVDAHN+VP W  S  +E  ARTIR KIHA+ P F  EFP +  +P     P +  DW     SL++DR+V EV W  PG  A  + L+ F+ +RL G+++  N+PN+  +S++SP+F+ GQ+S Q AVL V+ ++  + + V +FVE+ ++RREL+DNFCFYN             YD L GA DWAR+TL +H+ D R++ Y LQ LE+ +THD LWNAAQ+QMV +GKMH FLRMYWAKKILEW+ +PEDAL   I+LND++ELDGRDPNG+ GC WS+ G+HD GW ER +FGKIRYMNY GC RKF+V +F  KY
Sbjct:  119 EATIRHFGFLLKGLREVAEECGELGIPFHLLQGYAK-DVLPGFVTRHGIGGVVTDFSPLRVPLQWVEDVKERLP---QDVPLVQVDAHNIVPCWVASSKQEYGARTIRPKIHAQLPEFLTEFPPVVQHPFPAAAPAQPIDWDACYASLEVDRTVSEVKWAAPGTAAGLAVLQAFVTRRLPGYSEYRNNPNKAALSNLSPWFHFGQVSVQRAVLEVRKSRDRHRESVDSFVEEAVIRRELADNFCFYN-----------KSYDQLEGAHDWARDTLRLHARDKREYLYDLQQLEEGKTHDQLWNAAQIQMVREGKMHGFLRMYWAKKILEWTRSPEDALRFAIYLNDRFELDGRDPNGYVGCMWSICGIHDQGWAERNVFGKIRYMNYAGCKRKFNVGQFEHKY 506          
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Match: A0A516AGL5_CRYCO (Deoxyribodipyrimidine photo-lyase n=1 Tax=Crypthecodinium cohnii TaxID=2866 RepID=A0A516AGL5_CRYCO)

HSP 1 Score: 422 bits (1086), Expect = 5.810e-136
Identity = 213/415 (51.33%), Postives = 270/415 (65.06%), Query Frame = 1
Query:    7 TLRYAAFVLKGLAETEETLRSKRIPFRLLKAAEPGDVVPGLAKELAASAVVTDMSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMARTIRSKI-HARPSFFGEFPELG---DNPLETGLPKATDWTRAQKSLDLDRSVPEVTWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMSAQAAVLRVKTA-----KHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDYNKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQMVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGFTGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAASAAV 1224
            T+R   F+L+GL E E+ L SK IPF L K     + VP   KE  ASAVV DM+PLR P +W  +V   L  A  N PL QVDAHNVVPVW  S+ +E  ARTIR KI  + P++  +FP L    D P +   PK  DW  A+K+L++DR+V  V    PG    +  LE F   +L  FADK NDPN D+ S++SPY + GQ++ Q A L  + A     K Y  G ++F+E+ +VRREL+DNFCFYN            KYD + GA+ WA+ETL  H +D R+  Y+ Q LE+ ++HDDLWNAAQLQ+V +GKMH FLRMYWAKKILEW P P +AL   I LND+YELDGRDPNG+ GC WS+ G+HDMGW ER IFGKIR+MNY GC RKF++  FV +YPGA  + +
Sbjct:   81 TIRQFDFMLRGLREVEQDLISKDIPFHL-KMGLASNEVPAFCKEQEASAVVCDMAPLRVPMQWTNDVGNAL--ADLNIPLVQVDAHNVVPVWAASDKQEYAARTIRRKIMDSLPTYLKDFPPLEKHPDPPAKDKWPKPVDWDLAEKTLEVDRTVLPVKQFLPGMFEGKKVLEAFCGSKLSKFADKRNDPNSDISSNLSPYLHFGQLAPQRAALAARKAAEKDKKAYAKGCESFIEELVVRRELADNFCFYNP-----------KYDKIEGASAWAQETLKAHQSDKREHIYTAQQLEEGKSHDDLWNAAQLQLVREGKMHGFLRMYWAKKILEWMPTPAEALAEAIRLNDRYELDGRDPNGYVGCMWSICGIHDMGWTERPIFGKIRFMNYAGCKRKFNIPNFVKRYPGATKSVL 481          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18532.5004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQK0_ECTSI9.930e-22573.81Deoxyribodipyrimidine photo-lyase n=1 Tax=Ectocarp... [more]
A0A835Z6D6_9STRA7.460e-15955.88Deoxyribodipyrimidine photo-lyase n=1 Tax=Tribonem... [more]
A0A7S3XZZ2_HETAK8.720e-14953.90Deoxyribodipyrimidine photo-lyase n=1 Tax=Heterosi... [more]
A0A4D9CZD5_9STRA1.360e-14452.15Deoxyribodipyrimidine photo-lyase n=1 Tax=Nannochl... [more]
A9V1G3_MONBE9.670e-14153.62Deoxyribodipyrimidine photo-lyase n=1 Tax=Monosiga... [more]
F2U8C8_SALR51.900e-14049.78Deoxyribodipyrimidine photo-lyase n=1 Tax=Salpingo... [more]
A0A7S2FJK3_9STRA1.810e-13850.79Deoxyribodipyrimidine photo-lyase n=1 Tax=Dictyoch... [more]
A0A812HK27_9DINO9.610e-13853.11Deoxyribodipyrimidine photo-lyase n=1 Tax=Symbiodi... [more]
A0A7M4F2Y3_CROPO3.490e-13650.62Deoxyribodipyrimidine photo-lyase n=4 Tax=Crocodyl... [more]
A0A516AGL5_CRYCO5.810e-13651.33Deoxyribodipyrimidine photo-lyase n=1 Tax=Crypthec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18532contigH-elongata_contig18532:663..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score579.3
Seed ortholog evalue1.3e-162
Seed eggNOG ortholog2880.D8LQK0
Preferred namephr
KEGG koko:K01669
GOsGO:0000166,GO:0000719,GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009987,GO:0016829,GO:0016830,GO:0033554,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051716,GO:0071704,GO:0071949,GO:0090304,GO:0097159,GO:0140097,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.DNA photolyase activity
EggNOG OGsCOG0415@1,KOG0133@2759
Ec32 ortholog descriptionDNA photolyase, class 2
Ec32 orthologEc-10_005990.1
EC4.1.99.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons8
Model size2544
Cds size1155
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18532.5004.1prot_H-elongata_contig18532.5004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18532 1030..3932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.4836485-UTR-H-elongata_contig18532:662..7741622930059.4836485-UTR-H-elongata_contig18532:662..774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18532 663..774 +
1691679265.057493-UTR-H-elongata_contig18532:662..7741691679265.057493-UTR-H-elongata_contig18532:662..774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18532 663..774 +
1622930059.4998217-UTR-H-elongata_contig18532:976..10291622930059.4998217-UTR-H-elongata_contig18532:976..1029Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18532 977..1029 +
1691679265.0722547-UTR-H-elongata_contig18532:976..10291691679265.0722547-UTR-H-elongata_contig18532:976..1029Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18532 977..1029 +
1622930059.663984-UTR-H-elongata_contig18532:3932..51561622930059.663984-UTR-H-elongata_contig18532:3932..5156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18532 3933..5156 +
1691679265.181817-UTR-H-elongata_contig18532:3932..51561691679265.181817-UTR-H-elongata_contig18532:3932..5156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18532 3933..5156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.556921-CDS-H-elongata_contig18532:1029..11161622930059.556921-CDS-H-elongata_contig18532:1029..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 1030..1116 +
1691679265.081921-CDS-H-elongata_contig18532:1029..11161691679265.081921-CDS-H-elongata_contig18532:1029..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 1030..1116 +
1622930059.5712867-CDS-H-elongata_contig18532:1488..16961622930059.5712867-CDS-H-elongata_contig18532:1488..1696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 1489..1696 +
1691679265.0909765-CDS-H-elongata_contig18532:1488..16961691679265.0909765-CDS-H-elongata_contig18532:1488..1696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 1489..1696 +
1622930059.588648-CDS-H-elongata_contig18532:1930..22361622930059.588648-CDS-H-elongata_contig18532:1930..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 1931..2236 +
1691679265.1081712-CDS-H-elongata_contig18532:1930..22361691679265.1081712-CDS-H-elongata_contig18532:1930..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 1931..2236 +
1622930059.6054869-CDS-H-elongata_contig18532:2427..25791622930059.6054869-CDS-H-elongata_contig18532:2427..2579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 2428..2579 +
1691679265.121629-CDS-H-elongata_contig18532:2427..25791691679265.121629-CDS-H-elongata_contig18532:2427..2579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 2428..2579 +
1622930059.6204786-CDS-H-elongata_contig18532:2786..28781622930059.6204786-CDS-H-elongata_contig18532:2786..2878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 2787..2878 +
1691679265.134215-CDS-H-elongata_contig18532:2786..28781691679265.134215-CDS-H-elongata_contig18532:2786..2878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 2787..2878 +
1622930059.6353874-CDS-H-elongata_contig18532:3171..33431622930059.6353874-CDS-H-elongata_contig18532:3171..3343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 3172..3343 +
1691679265.1503448-CDS-H-elongata_contig18532:3171..33431691679265.1503448-CDS-H-elongata_contig18532:3171..3343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 3172..3343 +
1622930059.648266-CDS-H-elongata_contig18532:3794..39321622930059.648266-CDS-H-elongata_contig18532:3794..3932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 3795..3932 +
1691679265.171272-CDS-H-elongata_contig18532:3794..39321691679265.171272-CDS-H-elongata_contig18532:3794..3932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18532 3795..3932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18532.5004.1

>prot_H-elongata_contig18532.5004.1 ID=prot_H-elongata_contig18532.5004.1|Name=mRNA_H-elongata_contig18532.5004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=385bp
MSPLRAPRRWVQEVAKELNKAGQNTPLFQVDAHNVVPVWTTSEHREIMAR
TIRSKIHARPSFFGEFPELGDNPLETGLPKATDWTRAQKSLDLDRSVPEV
TWLKPGAKAARSNLETFIDKRLHGFADKSNDPNEDVISHMSPYFNTGQMS
AQAAVLRVKTAKHYPDGVKAFVEQGIVRRELSDNFCFYNGEEMRLRATDY
NKYDDLSGAADWARETLAIHSNDIRQWTYSLQDLEKARTHDDLWNAAQLQ
MVNDGKMHNFLRMYWAKKILEWSPAPEDALERCIFLNDKYELDGRDPNGF
TGCAWSVMGVHDMGWKEREIFGKIRYMNYGGCMRKFDVQRFVSKYPGAAS
AAVEAGGTPAPVKRKANNKGKGDRSIKKFLKTKA*
back to top

mRNA from alignment at H-elongata_contig18532:663..5156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18532.5004.1 ID=mRNA_H-elongata_contig18532.5004.1|Name=mRNA_H-elongata_contig18532.5004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4494bp|location=Sequence derived from alignment at H-elongata_contig18532:663..5156+ (Himanthalia elongata Himel1 dioecious)
CAGACCACGCTGAGATACGCGGCGTTCGTGCTGAAGGGTCTGGCAGAGAC GGAGGAGACCTTGAGGAGCAAGCGTATCCCTTTCCGGCTGCTTAAGGCGG CAGAGCCCGGAGGTATGAAGGACAGAGTGGGAAATAAATGGTGTAGGAGC ATGGGGGGACATCGCGCGCGAGGATAGACATCTCGTAAGGCACTCGGCGC CTCTGGTGTCCCTACACCACTGGTTGTTTCCTCAGGGGCTCTTCCGCTTC TATCTCGATGGTCCGAGGCTCAGTCGTTTTCGACGGACGTGTCGCGTGGG TTTTTTCTGAAAAGATGTGGTGCCAGGGCTGGCGAAGGAGCTGGCGGCGT CTGCCGTGGTGACGGATATGTCCCCCTTACGAGCTCCCCGGCGCTGGGTG CAAGAGGTGGCCAAAGAGCTGAACAAGGCTGGGCAAAACACGCCCCTGTT TCAGGTGAAGGCCGCGCGGTAGCTGTATGGTGTATATACACAGCCCGGTC GGGTTAATTCCCTCCTCGAGTGCGTGCTCTTGTGTGACCGGCTGCTGCCG AGAGACACCGTAATCAATTTTCCAATCCAATCCAATCCCTCATGTCTCGA TGGAACAACGTCATGTCTTGATGGAACACCCTCATGTCTTGATTCAACAC CGCCGTCGTTAACTCTCGCAGGGTACACCATTTTGTTGGTTGTAGTCCTT GTCAAGAGGCATGCAAAAAGACTAGTCCTGCAATAGGCAAAATAGGTATA ATATATTACTCGTCACCCTCTCTGTCCTCTCTGTCTATGATAGAAACTTG TCACACAATCCTTCACTAAACCACAGGTGGACGCCCACAACGTCGTTCCC GTCTGGACGACGTCGGAACACCGAGAGATTATGGCTCGAACAATCCGCTC TAAGATCCACGCTCGGCCGAGCTTTTTCGGAGAATTTCCGGAGCTCGGTG ACAATCCTCTCGAGACAGGACTGCCCAAGGCCACGGACTGGACGAGGGCT CAGAAGTCGCTCGATCTCGACCGTTCTGTCCCGGGTATGCGGAGACTGAC TTATATCACCGCTTTGGATGTTACCTTTTCGGCATGACCGCCCGGCGCCC ACCTGTGACAGGCATATGTCGAGAAGGACAAAGATAATCTTCCTCTTCTT CCTCTTCTTCCTCTTAAGGTTGTTCAGAGATGACAATCGATCCTCGCACT CTTGGCCGCGATGAAAAATACCCACACGCGCGTATGGCATGTTCGACTCT CTTGACTCTTTTTGTCAGAGGTGACTTGGCTCAAGCCGGGTGCAAAGGCG GCGAGAAGCAACCTCGAGACATTCATCGACAAGCGGCTTCACGGATTTGC GGACAAGTCCAACGATCCCAACGAGGACGTTATCTCTCACATGTCCCCTT ACTTCAACACCGGCCAGATGAGCGCACAAGCCGCGGTGTTGCGGGTAAAG ACGGCGAAACATTACCCGGACGGGGTGAAGGCGTTCGTGGAGCAGGGCAT CGTGAGGCGCGAGCTGTCGGACAATTTCTGCTTCTACAACGGCGAGGAGA TGCGATTGCGCGCGACCGACTATAGTCGCTCGGTAGGGTGAAATCAATCG CCGCACCGGGAAGGGCTTTTCCCCGCAGAAATATATATTTTTTAGAGAGG TGGAGGCGATTTTTCAAAACCGCGATGAGTTTACTTATGCGAAGAAGCCT TCTGACACACGGCCTGGGTCGTTTGAATGGTTCCCCATTTGTTTGGCTTC TTCCGGTCTCCACAGATAAGTACGACGACCTTTCGGGGGCGGCGGATTGG GCTCGCGAAACGCTCGCCATTCACAGCAACGACATTCGTCAGTGGACGTA TTCCTTGCAGGACCTCGAGAAGGCCAGGACGCACGACGACCTGTGGAACG CCGCGCAGCTCCAAATGGTGAGGTTATCGCCCAGCGACCCGGTTTTCGTA CTTTGGCAGAGTGTATATTGTTCGCCGTCTTTACTTGTTTTTTCACAGTC CCGTGGTTGATCTATCTTCACGGGAAGGCTTGGCACCCATCGTTCTCAGG GTATCGTTAATCGAGGTTTCCCTCGTCACGGGTTGCCTGGCCCGCGGCAC TCGGACACCGTTTGTCACTCTCAGGTGAATGATGGCAAGATGCACAACTT CCTAAGGATGTACTGGGCGAAGAAGATCCTGGAGTGGTCGCCGGCACCTG AAGACGCGCTTGAGAGGTTACTTCCGTAGAAACGCAGTGTGTCGTAAGTG TATGCCACTGCTCATTCAAGAGCCCCGTCCAAGGATTCTATTTTTACACA CACTTGAGTTTCCCGTGGTCCAGTGTCCCCTTCCTCCCCCCCTTACGGTG TTTTTTCGAGGGTGTCACGGCGTTTAGGTCCGCGTTCGCTCTCACCCCTT GCCATCGTGTGCCGGACAAGGATCGACGGAAAGCATCGTGAAAATATCGC GTTCGTCTTTCCGCATTGTTTTCTACAGCCTCCTTCGTGCGTTGAATTCT GCCGAACAGGTGCATCTTCCTCAACGACAAGTACGAGCTCGACGGGCGGG ATCCTAACGGCTTCACTGGATGCGCCTGGTCGGTCATGGGTGTCCACGAC ATGGGGTGGAAGGAGCGCGAGATTTTTGGGAAGATACGGTACATGAACTA CGGTGGTTGCATGCGAAAGTTCGACGTCCAGGTAAAATCTCAGCGGCGGT GACGACGGTCGGAACCCACCCCGATCACTAGTATGAGGGTGACGACGGTC ACGGCCGAAACCCACCCCGATCACTAGTATAAGTTTTTATCCATTTTTTG CGATGTGTTGTTGCCTGGTTGAGTCTCATAGTCCCGTCGTGCGATAACCA GCCCGGTGCGTCCAAAACTGTGATTTGAGGGTGCGCCAGAACCACATCGC GTCTGTGTTACATGGTGCATTGGTGGCCGGCCCCCTCTGAGGACTCGAAT TTGTGGCCATTATGTCCGCTGGCATCCGCACTGCGGAGTCGATCGCACGA GAGATACTCTCAAGGGGATTGATTGTGCCACCCCCAGCCCCAACCGTATT TATTCCCTGAGCAACCCGCCGAAATGTGTCGAAATCTTCGGTTCTCATCG GGTTTGGCTACACCCCTGTCCGGCCGTTACAGAGATTCGTTTCCAAGTAT CCTGGGGCGGCGTCGGCCGCTGTAGAGGCGGGTGGTACCCCTGCCCCGGT CAAGAGGAAAGCCAACAACAAGGGCAAGGGAGATAGAAGCATCAAAAAGT TTTTGAAGACGAAGGCGTGAAGTATAAAGGGCGGCACAGACGACTTAGAA GACGGCTTGGGACGTTTCCTACCCGGGAAACCTGATTTCTTGATATCTTG ATGGGAAATGCGCCGCCGCCTTAAAAAGCCACAGCGTAGTGAGCCGTTAT TATTTATTTGGAATATTCCGGATCGCGAGATGTTTTTGTGCAGTAGCGAG GCGACCTTTTTACTCAATTTTAGTACAGAAACCGATTTGTACCTCTTTTT TTTTCTTTTTTTTTTACAAATCTTGGAATGGTTAGGCACCCCCGTCGCTG GCGTTATATACCGTTCGTCCGTCGCCTTTTAGCTTCTTTTTTTTTAAGCA GGAAAGCGGACATTCTGTACTCATCTATTATAATAGTAGTCTAAACTAGA GAGCAGATAGGGCAGCTGGAGAAATAAGAGATATGCCCTAGCCTCTTCAA TTTTTCTCTATGACCATGGTATGCTTTATTATTATGTCATCGCCATCTGA TTGGCCGATTGGAGAGGAGGAGGAGGAAATCTGGAAGTTTGGGGACTGGG ACTAGCGAAGTTTGTTTCGGAGTGACAGGCGGGCGAAATGCGATATGTTT CGTAATGCGACAGCTTGGTCCACGGGGGAGGGGGCGTGCTAGCGGTGTAA GCCCCACCCGACGCACCCCGTGCATTAAATGTTTCCCGCAGCTGTGCGCA ACTGACTGTCTTTTGTCGGCCCTCCCCGGCCTTGTCGGTCTTTTCAATTA AAAAAAAATCGTGGAGATCGTCAAAGATCGTGTGCACATTAGGACGATGC AATTGGAGTACAGTAGACGTAACCGCCTACGTGTACCGCCTCCACTGAAC TAATGTGTGCAAGCGAGGGACGAGTCATGTTTTGCTCTTCTTCTTTTTTC CGTTTCCAGTCGAGTGGCGGTTCAAAAGAGGTTCAAAAGAGGAGAGGAGA GGAGACTATTAGTGGAGTGGCGGTTCAAAAGAGGAGGCTATTTTTGGAGT TGTGCTGGCTTTAAGAGATGTTTAGAGAGTAAAGGCGTGGATTTTTGTTT TGATTTTATACTGAGTACGATTATGTACCTCAGAGCTACTGTCAGCCTCT TGCACCCCTATTCAATAGAATTTCGCCAAGTCTAGTCAAAGGGTAAGCAG CCTGCTTGTAAACCTACCGAAGCAACCCCAATCCTTCTAGACGGCGATAA ACACTCAGAAAAGGAACGTTCCTGTCCTACACCTCCTTCCAGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18532:663..5156+

>mRNA_H-elongata_contig18532.5004.1 ID=mRNA_H-elongata_contig18532.5004.1|Name=mRNA_H-elongata_contig18532.5004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2310bp|location=Sequence derived from alignment at H-elongata_contig18532:663..5156+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCCCTTACGAGCTCCCCGGCGCTGGGTGCAAGAGGTGGCCAAAGA
GCTGAACAAGGCTGGGCAAAACACGCCCCTGTTTCAGATGTCCCCCTTAC
GAGCTCCCCGGCGCTGGGTGCAAGAGGTGGCCAAAGAGCTGAACAAGGCT
GGGCAAAACACGCCCCTGTTTCAGGTGGACGCCCACAACGTCGTTCCCGT
CTGGACGACGTCGGAACACCGAGAGATTATGGCTCGAACAATCCGCTCTA
AGATCCACGCTCGGCCGAGCTTTTTCGGAGAATTTCCGGAGCTCGGTGAC
AATCCTCTCGAGACAGGACTGCCCAAGGCCACGGACTGGACGAGGGCTCA
GAAGTCGCTCGATCTCGACCGTTCTGTCCCGGGTGGACGCCCACAACGTC
GTTCCCGTCTGGACGACGTCGGAACACCGAGAGATTATGGCTCGAACAAT
CCGCTCTAAGATCCACGCTCGGCCGAGCTTTTTCGGAGAATTTCCGGAGC
TCGGTGACAATCCTCTCGAGACAGGACTGCCCAAGGCCACGGACTGGACG
AGGGCTCAGAAGTCGCTCGATCTCGACCGTTCTGTCCCGGAGGTGACTTG
GCTCAAGCCGGGTGCAAAGGCGGCGAGAAGCAACCTCGAGACATTCATCG
ACAAGCGGCTTCACGGATTTGCGGACAAGTCCAACGATCCCAACGAGGAC
GTTATCTCTCACATGTCCCCTTACTTCAACACCGGCCAGATGAGCGCACA
AGCCGCGGTGTTGCGGGTAAAGACGGCGAAACATTACCCGGACGGGGTGA
AGGCGTTCGTGGAGCAGGGCATCGTGAGGCGCGAGCTGTCGGACAATTTC
TGCTTCTACAACGGCGAGGAGATGCGATTGCGCGCGACCGACTATAAGGT
GACTTGGCTCAAGCCGGGTGCAAAGGCGGCGAGAAGCAACCTCGAGACAT
TCATCGACAAGCGGCTTCACGGATTTGCGGACAAGTCCAACGATCCCAAC
GAGGACGTTATCTCTCACATGTCCCCTTACTTCAACACCGGCCAGATGAG
CGCACAAGCCGCGGTGTTGCGGGTAAAGACGGCGAAACATTACCCGGACG
GGGTGAAGGCGTTCGTGGAGCAGGGCATCGTGAGGCGCGAGCTGTCGGAC
AATTTCTGCTTCTACAACGGCGAGGAGATGCGATTGCGCGCGACCGACTA
TAATAAGTACGACGACCTTTCGGGGGCGGCGGATTGGGCTCGCGAAACGC
TCGCCATTCACAGCAACGACATTCGTCAGTGGACGTATTCCTTGCAGGAC
CTCGAGAAGGCCAGGACGCACGACGACCTGTGGAACGCCGCGCAGCTCCA
AATGATAAGTACGACGACCTTTCGGGGGCGGCGGATTGGGCTCGCGAAAC
GCTCGCCATTCACAGCAACGACATTCGTCAGTGGACGTATTCCTTGCAGG
ACCTCGAGAAGGCCAGGACGCACGACGACCTGTGGAACGCCGCGCAGCTC
CAAATGGTGAATGATGGCAAGATGCACAACTTCCTAAGGATGTACTGGGC
GAAGAAGATCCTGGAGTGGTCGCCGGCACCTGAAGACGCGCTTGAGAGGT
GAATGATGGCAAGATGCACAACTTCCTAAGGATGTACTGGGCGAAGAAGA
TCCTGGAGTGGTCGCCGGCACCTGAAGACGCGCTTGAGAGGTGCATCTTC
CTCAACGACAAGTACGAGCTCGACGGGCGGGATCCTAACGGCTTCACTGG
ATGCGCCTGGTCGGTCATGGGTGTCCACGACATGGGGTGGAAGGAGCGCG
AGATTTTTGGGAAGATACGGTACATGAACTACGGTGGTTGCATGCGAAAG
TTCGACGTCCAGGTGCATCTTCCTCAACGACAAGTACGAGCTCGACGGGC
GGGATCCTAACGGCTTCACTGGATGCGCCTGGTCGGTCATGGGTGTCCAC
GACATGGGGTGGAAGGAGCGCGAGATTTTTGGGAAGATACGGTACATGAA
CTACGGTGGTTGCATGCGAAAGTTCGACGTCCAGAGATTCGTTTCCAAGT
ATCCTGGGGCGGCGTCGGCCGCTGTAGAGGCGGGTGGTACCCCTGCCCCG
GTCAAGAGGAAAGCCAACAACAAGGGCAAGGGAGATAGAAGCATCAAAAA
GTTTTTGAAGACGAAGGCGTGAAGATTCGTTTCCAAGTATCCTGGGGCGG
CGTCGGCCGCTGTAGAGGCGGGTGGTACCCCTGCCCCGGTCAAGAGGAAA
GCCAACAACAAGGGCAAGGGAGATAGAAGCATCAAAAAGTTTTTGAAGAC
GAAGGCGTGA
back to top