mRNA_H-elongata_contig18522.5002.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18522.5002.1
Unique NamemRNA_H-elongata_contig18522.5002.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18522.5002.1 vs. uniprot
Match: D8LBT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 8.820e-23
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:   10 SDGKIEDLGRGAVIRLVASLGMGRYAHRFRAFAVTGADLAACTEEDLVQIGVSFR 174
            SD KIEDLGRGAV+RL+ +LGMGRYAHRFRAFAVTG+DLA+CTEEDLVQIGVSFR
Sbjct:   88 SDEKIEDLGRGAVVRLIGNLGMGRYAHRFRAFAVTGSDLASCTEEDLVQIGVSFR 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18522.5002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBT9_ECTSI8.820e-2387.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18522contigH-elongata_contig18522:6659..6832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSterile alpha motif/pointed domain
Ec32 orthologEc-27_002730.1
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.280224-CDS-H-elongata_contig18522:6658..68321622930059.280224-CDS-H-elongata_contig18522:6658..6832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18522 6659..6832 +
1691679264.9655895-CDS-H-elongata_contig18522:6658..68321691679264.9655895-CDS-H-elongata_contig18522:6658..6832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18522 6659..6832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18522.5002.1prot_H-elongata_contig18522.5002.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18522 6659..6832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18522.5002.1

>prot_H-elongata_contig18522.5002.1 ID=prot_H-elongata_contig18522.5002.1|Name=mRNA_H-elongata_contig18522.5002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
LHRSDGKIEDLGRGAVIRLVASLGMGRYAHRFRAFAVTGADLAACTEEDL
VQIGVSFR
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mRNA from alignment at H-elongata_contig18522:6659..6832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18522.5002.1 ID=mRNA_H-elongata_contig18522.5002.1|Name=mRNA_H-elongata_contig18522.5002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig18522:6659..6832+ (Himanthalia elongata Himel1 dioecious)
CTGCATCGTTCAGATGGCAAGATCGAAGACTTGGGACGCGGTGCTGTGAT
CCGACTCGTCGCGAGTCTAGGCATGGGACGCTACGCCCACAGGTTCCGTG
CGTTTGCTGTCACGGGTGCAGACCTCGCTGCATGCACGGAAGAAGACCTC
GTCCAGATCGGTGTCAGCTTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig18522:6659..6832+

>mRNA_H-elongata_contig18522.5002.1 ID=mRNA_H-elongata_contig18522.5002.1|Name=mRNA_H-elongata_contig18522.5002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig18522:6659..6832+ (Himanthalia elongata Himel1 dioecious)
CTGCATCGTTCAGATGGCAAGATCGAAGACTTGGGACGCGGTGCTGTGAT
CCGACTCGTCGCGAGTCTAGGCATGGGACGCTACGCCCACAGGTTCCGTG
CGTTTGCTGTCACGGGTGCAGACCTCGCTGCATGCACGGAAGAAGACCTC
GTCCAGATCGGTGTCAGCTTCAGGCTGCATCGTTCAGATGGCAAGATCGA
AGACTTGGGACGCGGTGCTGTGATCCGACTCGTCGCGAGTCTAGGCATGG
GACGCTACGCCCACAGGTTCCGTGCGTTTGCTGTCACGGGTGCAGACCTC
GCTGCATGCACGGAAGAAGACCTCGTCCAGATCGGTGTCAGCTTCAGG
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