mRNA_H-elongata_contig185141.4999.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185141.4999.1
Unique NamemRNA_H-elongata_contig185141.4999.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A6H5JB66_9PHAE (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB66_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.240e-34
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GVKNLMERLGRMKA KPLFVDFTWGAGGSTA+LT++LT R K EH LVPNMHLTCTNMPV KID ALAQCK
Sbjct:   41 GVKNLMERLGRMKATKPLFVDFTWGAGGSTAELTLDLTTRTKKEHGLVPNMHLTCTNMPVDKIDHALAQCK 111
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A836CIM9_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIM9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.090e-25
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GV NL ER+ R+K + P F+DFTWGAGG+TADLT++L L AK EH L PNMHLTCTNMPV KID+AL  C+
Sbjct:   43 GVVNLRERIQRLKRVAPFFIDFTWGAGGNTADLTLDLVLEAKLEHGLEPNMHLTCTNMPVLKIDNALQACR 113
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A836C869_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C869_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.390e-25
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GV NL ERL R+K + P+F DFTWGAGGSTADLT++LTL AK+ H L PNMHLTCTNMP+++I+ AL +C+
Sbjct:   46 GVDNLRERLQRLKKVGPVFADFTWGAGGSTADLTLDLTLEAKHAHGLRPNMHLTCTNMPLERIESALRRCR 116
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A7S3GGD2_9EUKA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGD2_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 6.440e-25
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GVKNL  R GRMK   P+FVD TWGAGGST+DLTVE+  +AK+E+ L PNMHLTCTNM  QK++DAL +C+
Sbjct:   31 GVKNLYARFGRMKEQHPVFVDVTWGAGGSTSDLTVEICEKAKHEYGLEPNMHLTCTNMVPQKVEDALKKCR 101
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A7S1C6C6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6C6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.580e-24
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GV NL +RLGRM   +PL+VDFTWGAGGSTADLT+ELT+ +K    L PNMHLTCTNMPV+KI  AL   K
Sbjct:   42 GVANLYKRLGRMAQQEPLYVDFTWGAGGSTADLTLELTVESKKRFGLEPNMHLTCTNMPVEKITTALEGAK 112
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A7S1ALW9_NOCSC (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALW9_NOCSC)

HSP 1 Score: 99.0 bits (245), Expect = 4.130e-24
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GVKNL +R+ RMK + PLF+DFTWGAGGST+DLT++L  + KNE   V NMHLTCTNM   K+D ALA CK
Sbjct:   36 GVKNLYKRILRMKTLDPLFLDFTWGAGGSTSDLTMQLCDKVKNEFGAVANMHLTCTNMEKDKVDVALADCK 106
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A7S3RLW6_9SPIT (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RLW6_9SPIT)

HSP 1 Score: 95.1 bits (235), Expect = 2.560e-23
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GV+NL +R+ RMK + P+F DFTWGAGGST++LT+ LT  AKNE+  V NMHLTCTN   + + DAL +CK
Sbjct:   33 GVENLRKRIVRMKNLNPMFTDFTWGAGGSTSELTLTLTSAAKNEYGCVANMHLTCTNQKAEMVGDALTKCK 103
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A7S3RLW0_9SPIT (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RLW0_9SPIT)

HSP 1 Score: 95.1 bits (235), Expect = 2.690e-23
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GV+NL +R+ RMK + P+F DFTWGAGGST++LT+ LT  AKNE+  V NMHLTCTN   + + DAL +CK
Sbjct:   35 GVENLRKRIVRMKNLNPMFTDFTWGAGGSTSELTLTLTSAAKNEYGCVANMHLTCTNQKAEMVGDALTKCK 105
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A7S1FBX8_NOCSC (Multifunctional fusion protein (Fragment) n=2 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FBX8_NOCSC)

HSP 1 Score: 99.0 bits (245), Expect = 1.520e-22
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GVKNL +R+ RMK + PLF+DFTWGAGGST+DLT++L  + KNE   V NMHLTCTNM   K+D ALA CK
Sbjct:   36 GVKNLYKRILRMKTLDPLFLDFTWGAGGSTSDLTMQLCDKVKNEFGAVANMHLTCTNMEKDKVDVALADCK 106
[Close]
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Match: A0A7S3H5C4_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5C4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.640e-22
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 GVKNLMERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTCTNMPVQKIDDALAQCK 213
            GVKNL +R+ RM  + PLF DFTWGAGGST++L+++LT  AKNE   V NMHLTCTN   +   DAL QCK
Sbjct:   35 GVKNLHKRINRMATLGPLFTDFTWGAGGSTSELSLQLTSWAKNEAGTVSNMHLTCTNQKSEMCGDALTQCK 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185141.4999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB66_9PHAE1.240e-3485.92Methylenetetrahydrofolate reductase (NAD(P)H) n=2 ... [more]
A0A836CIM9_9STRA1.090e-2567.61Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A836C869_9STRA1.390e-2566.20Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S3GGD2_9EUKA6.440e-2566.20Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S1C6C6_9STRA3.580e-2467.61Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S1ALW9_NOCSC4.130e-2464.79Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S3RLW6_9SPIT2.560e-2359.15Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S3RLW0_9SPIT2.690e-2359.15Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S1FBX8_NOCSC1.520e-2264.79Multifunctional fusion protein (Fragment) n=2 Tax=... [more]
A0A7S3H5C4_9STRA1.640e-2260.56Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185141contigH-elongata_contig185141:179..391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D8LCN9
KEGG rclassRC00081
KEGG koko:K00297
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523
KEGG ModuleM00377
EggNOG free text desc.methylenetetrahydrofolate reductase (NAD(P)H) activity
EggNOG OGsCOG0685@1,KOG0564@2759
EC1.5.1.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.1479518-CDS-H-elongata_contig185141:178..3761622930059.1479518-CDS-H-elongata_contig185141:178..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185141 179..376 -
1691679264.893795-CDS-H-elongata_contig185141:178..3761691679264.893795-CDS-H-elongata_contig185141:178..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185141 179..376 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.1608548-UTR-H-elongata_contig185141:376..3911622930059.1608548-UTR-H-elongata_contig185141:376..391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185141 377..391 -
1691679264.9127743-UTR-H-elongata_contig185141:376..3911691679264.9127743-UTR-H-elongata_contig185141:376..391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185141 377..391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185141.4999.1prot_H-elongata_contig185141.4999.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185141 179..376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185141.4999.1

>prot_H-elongata_contig185141.4999.1 ID=prot_H-elongata_contig185141.4999.1|Name=mRNA_H-elongata_contig185141.4999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MERLGRMKAMKPLFVDFTWGAGGSTADLTVELTLRAKNEHSLVPNMHLTC
TNMPVQKIDDALAQCK
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mRNA from alignment at H-elongata_contig185141:179..391-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185141.4999.1 ID=mRNA_H-elongata_contig185141.4999.1|Name=mRNA_H-elongata_contig185141.4999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig185141:179..391- (Himanthalia elongata Himel1 dioecious)
GGTGTAAAGAACCTGATGGAAAGGCTCGGACGCATGAAGGCCATGAAGCC
CCTCTTCGTCGACTTTACGTGGGGTGCAGGGGGCAGCACCGCCGACCTGA
CGGTAGAGCTGACCCTAAGGGCCAAAAACGAGCACTCTCTCGTCCCCAAC
ATGCACCTCACATGCACCAACATGCCCGTCCAGAAGATCGACGATGCCCT
CGCGCAGTGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig185141:179..391-

>mRNA_H-elongata_contig185141.4999.1 ID=mRNA_H-elongata_contig185141.4999.1|Name=mRNA_H-elongata_contig185141.4999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig185141:179..391- (Himanthalia elongata Himel1 dioecious)
ATGGAAAGGCTCGGACGCATGAAGGCCATGAAGCCCCTCTTCGTCGACTT
TACGTGGGGTGCAGGGGGCAGCACCGCCGACCTGACGGTAGAGCTGACCC
TAAGGGCCAAAAACGAGCACTCTCTCGTCCCCAACATGCACCTCACATGC
ACCAACATGCCCGTCCAGAAGATCGACGATGCCCTCGCGCAGTGCAAGAT
GGAAAGGCTCGGACGCATGAAGGCCATGAAGCCCCTCTTCGTCGACTTTA
CGTGGGGTGCAGGGGGCAGCACCGCCGACCTGACGGTAGAGCTGACCCTA
AGGGCCAAAAACGAGCACTCTCTCGTCCCCAACATGCACCTCACATGCAC
CAACATGCCCGTCCAGAAGATCGACGATGCCCTCGCGCAGTGCAAG
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