mRNA_H-elongata_contig185058.4996.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185058.4996.1
Unique NamemRNA_H-elongata_contig185058.4996.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: D8LKU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.880e-21
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 KPMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            KP+KTI C+DT WSVIS DFSPDEKWLAYSSW PYVHLCNTRG
Sbjct:  288 KPLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 330
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: A0A6H5K2A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.910e-21
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 KPMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            KP+KTI C+DT WSVIS DFSPDEKWLAYSSW PYVHLCNTRG
Sbjct:  352 KPLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRG 394
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: A0A835ZBR0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.540e-15
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 KPMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            +P KTI C D GW+V+  DFSPD++WLAYSSW  YVHLCN +G
Sbjct:  302 RPYKTIVCRDVGWAVVGTDFSPDDQWLAYSSWSQYVHLCNVQG 344
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: A0A2P6NFA9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NFA9_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-11
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 MKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            +K I   + GWS+I  D+SPD++WL YSSW PY+HLCN +G
Sbjct:  136 VKVIQARNIGWSIIDTDYSPDKRWLIYSSWSPYIHLCNIQG 176
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: A0A2P6NAE7_9EUKA (WD repeat domain 23 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAE7_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-10
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 KPMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            K  K I   + GWS+I  D+SPD++WL YSSW  Y+HLCN  G
Sbjct:  191 KKTKEIQARNIGWSIIDTDYSPDQRWLIYSSWSEYIHLCNITG 233
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: A0A4D9D5A2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5A2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.780e-10
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 PMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            P K IHC   GW+++ + FSPD KW+AYSSW   +HL NT G
Sbjct:  111 PQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFG 152
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: W7TW78_9STRA (Ddb1-and cul4-associated factor 11 isoform 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TW78_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.930e-10
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 PMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            P K IHC   GW+++ + FSPD KW+AYSSW   +HL NT G
Sbjct:  236 PQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFG 277
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: A0A6A7GBQ5_9CRUS (DDB1-and CUL4-associated factor 11-like isoform X2 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GBQ5_9CRUS)

HSP 1 Score: 61.2 bits (147), Expect = 8.930e-10
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 KPMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            K  ++I  +DTGWS+I  D+SPD++W+AYSSW   +HL N  G
Sbjct:  166 KVRRSISGLDTGWSIIDLDYSPDQRWIAYSSWSTIIHLVNVYG 208
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: A0A8J4V637_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V637_9MYCE)

HSP 1 Score: 58.9 bits (141), Expect = 5.820e-9
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   10 KTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            K+I   D  WS+I  D+SPD+ WL YSSW PY+ LC  + 
Sbjct:  299 KSIEARDINWSIIDTDYSPDQNWLVYSSWSPYIQLCKIKS 338
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BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Match: F4Q142_CAVFA (WD40 repeat-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q142_CAVFA)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-8
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    1 KPMKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG 129
            K    +H     WS+I  DFS D+++  YSSW PY+H+CNT G
Sbjct:  171 KERNMVHARYVSWSIIDTDFSQDQQFFIYSSWSPYIHICNTNG 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185058.4996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LKU7_ECTSI6.880e-2186.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A5_9PHAE6.910e-2186.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBR0_9STRA8.540e-1565.12WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A2P6NFA9_9EUKA1.100e-1156.10Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A2P6NAE7_9EUKA1.370e-1053.49WD repeat domain 23 n=1 Tax=Planoprotostelium fung... [more]
A0A4D9D5A2_9STRA8.780e-1054.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TW78_9STRA8.930e-1054.76Ddb1-and cul4-associated factor 11 isoform 1 n=1 T... [more]
A0A6A7GBQ5_9CRUS8.930e-1051.16DDB1-and CUL4-associated factor 11-like isoform X2... [more]
A0A8J4V637_9MYCE5.820e-950.00Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F4Q142_CAVFA1.090e-846.51WD40 repeat-containing protein n=1 Tax=Cavenderia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185058contigH-elongata_contig185058:728..859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1e-15
Seed eggNOG ortholog2880.D8LKU7
Preferred nameDCAF11
KEGG koko:K10770,ko:K11801
GOsGO:0000122,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007568,GO:0008021,GO:0008134,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0019219,GO:0019222,GO:0019538,GO:0019867,GO:0019941,GO:0030133,GO:0030163,GO:0030424,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031461,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044464,GO:0045202,GO:0045892,GO:0045927,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051603,GO:0055120,GO:0060255,GO:0065007,GO:0070013,GO:0070382,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0120025,GO:1901214,GO:1901216,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905802,GO:1905803,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
EC2.1.1.229
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.0016947-UTR-H-elongata_contig185058:727..7331622930059.0016947-UTR-H-elongata_contig185058:727..733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185058 728..733 +
1691679264.84269-UTR-H-elongata_contig185058:727..7331691679264.84269-UTR-H-elongata_contig185058:727..733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185058 728..733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.0132163-CDS-H-elongata_contig185058:733..8591622930059.0132163-CDS-H-elongata_contig185058:733..859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185058 734..859 +
1691679264.8548546-CDS-H-elongata_contig185058:733..8591691679264.8548546-CDS-H-elongata_contig185058:733..859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185058 734..859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185058.4996.1prot_H-elongata_contig185058.4996.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185058 734..859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185058.4996.1

>prot_H-elongata_contig185058.4996.1 ID=prot_H-elongata_contig185058.4996.1|Name=mRNA_H-elongata_contig185058.4996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MKTIHCIDTGWSVISADFSPDEKWLAYSSWCPYVHLCNTRG*
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mRNA from alignment at H-elongata_contig185058:728..859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185058.4996.1 ID=mRNA_H-elongata_contig185058.4996.1|Name=mRNA_H-elongata_contig185058.4996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig185058:728..859+ (Himanthalia elongata Himel1 dioecious)
AAGCCGATGAAGACGATCCATTGTATCGACACCGGGTGGAGCGTGATCTC
GGCGGATTTTTCTCCCGACGAGAAGTGGCTGGCGTATTCGAGCTGGTGTC
CGTATGTGCACCTTTGCAACACTCGAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig185058:728..859+

>mRNA_H-elongata_contig185058.4996.1 ID=mRNA_H-elongata_contig185058.4996.1|Name=mRNA_H-elongata_contig185058.4996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig185058:728..859+ (Himanthalia elongata Himel1 dioecious)
ATGAAGACGATCCATTGTATCGACACCGGGTGGAGCGTGATCTCGGCGGA
TTTTTCTCCCGACGAGAAGTGGCTGGCGTATTCGAGCTGGTGTCCGTATG
TGCACCTTTGCAACACTCGAGGGTGAATGAAGACGATCCATTGTATCGAC
ACCGGGTGGAGCGTGATCTCGGCGGATTTTTCTCCCGACGAGAAGTGGCT
GGCGTATTCGAGCTGGTGTCCGTATGTGCACCTTTGCAACACTCGAGGGT
GA
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